Wall clock time and date at job start Tue Mar 31 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99309 * 293.79645 * 10 9 7 12 12 C 1.53054 * 109.36022 * 176.81270 * 11 10 9 13 13 N 1.46951 * 109.36727 * 58.40197 * 12 11 10 14 14 C 1.46903 * 111.00354 * 176.81450 * 13 12 11 15 15 C 1.50698 * 109.46672 * 293.79821 * 14 13 12 16 16 C 1.38298 * 120.14417 * 104.72412 * 15 14 13 17 17 C 1.37749 * 120.04888 * 179.72375 * 16 15 14 18 18 C 1.38976 * 120.87127 * 0.81355 * 17 16 15 19 19 C 1.39155 * 118.93830 * 359.38788 * 18 17 16 20 20 C 1.38460 * 120.19415 * 0.15700 * 19 18 17 21 21 O 1.35898 * 119.88538 * 180.11536 * 20 19 18 22 22 O 1.36142 * 111.22388 * 179.03268 * 18 17 16 23 23 C 1.43767 * 109.26021 * 18.87945 * 22 18 17 24 24 C 1.51661 * 132.11260 * 180.72905 * 17 16 15 25 25 H 1.09003 * 110.93548 * 46.40508 * 24 17 16 26 26 O 1.42896 * 110.97126 * 282.73591 * 24 17 16 27 27 C 1.46965 * 110.87797 * 300.68074 * 13 12 11 28 28 C 1.46956 * 111.00010 * 169.99973 * 10 9 7 29 29 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 31 31 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 32 32 H 1.08992 * 109.48999 * 296.77608 * 11 10 9 33 33 H 1.09000 * 109.48679 * 56.84883 * 11 10 9 34 34 H 1.09001 * 109.48827 * 298.43413 * 12 11 10 35 35 H 1.08995 * 109.49136 * 178.37301 * 12 11 10 36 36 H 1.09001 * 109.46960 * 53.79748 * 14 13 12 37 37 H 1.08995 * 109.47158 * 173.80027 * 14 13 12 38 38 H 1.08003 * 119.97415 * 359.97438 * 16 15 14 39 39 H 1.07993 * 119.90071 * 180.13371 * 19 18 17 40 40 H 0.96703 * 113.99821 * 269.98291 * 21 20 19 41 41 H 1.09004 * 110.74382 * 90.62573 * 23 22 18 42 42 H 1.08997 * 110.74575 * 213.96821 * 23 22 18 43 43 H 0.96699 * 114.00158 * 185.99522 * 26 24 17 44 44 H 1.08998 * 109.49097 * 299.34702 * 27 13 12 45 45 H 1.09000 * 109.48428 * 179.28355 * 27 13 12 46 46 H 1.09003 * 109.49025 * 303.15368 * 28 10 9 47 47 H 1.09001 * 109.49009 * 63.19555 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.9683 -3.6563 -1.2559 12 6 4.0038 -4.7811 -1.1844 13 7 3.3191 -6.0594 -0.9461 14 6 4.2737 -7.1760 -0.9461 15 6 4.8576 -7.3376 -2.3260 16 6 6.1483 -6.9157 -2.5876 17 6 6.6821 -7.0695 -3.8482 18 6 5.9338 -7.6313 -4.8757 19 6 4.6339 -8.0511 -4.6103 20 6 4.1005 -7.9050 -3.3409 21 8 2.8312 -8.3193 -3.0881 22 8 6.6426 -7.6695 -6.0375 23 6 8.0435 -7.5378 -5.7429 24 6 8.0420 -6.7268 -4.4255 25 1 8.8413 -7.0587 -3.7629 26 8 8.1481 -5.3262 -4.6879 27 6 2.5561 -6.0188 0.3093 28 6 1.5206 -4.8941 0.2377 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5570 0.8898 31 1 0.6239 -2.5567 -0.8903 32 1 2.2892 -3.8397 -2.0884 33 1 3.4763 -2.7033 -1.4036 34 1 4.6994 -4.5837 -0.3688 35 1 4.5514 -4.8318 -2.1254 36 1 5.0736 -6.9702 -0.2349 37 1 3.7596 -8.0934 -0.6594 38 1 6.7397 -6.4690 -1.8020 39 1 4.0393 -8.4917 -5.3968 40 1 2.1591 -7.6397 -3.2347 41 1 8.5003 -8.5162 -5.5936 42 1 8.5544 -6.9886 -6.5337 43 1 8.9631 -5.0716 -5.1416 44 1 3.2352 -5.8355 1.1419 45 1 2.0481 -6.9718 0.4570 46 1 0.9731 -4.8434 1.1789 47 1 0.8247 -5.0913 -0.5777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872733786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:18 Heat of formation + Delta-G solvation = -101.266283 kcal Electronic energy + Delta-G solvation = -29244.178489 eV Core-core repulsion = 25198.759430 eV Total energy + Delta-G solvation = -4045.419059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 38.61 seconds Orbital eigenvalues (eV) -42.31625 -40.51626 -39.53575 -37.39978 -37.11758 -36.38468 -34.59072 -32.34213 -32.01291 -31.71570 -29.74816 -29.20508 -27.41997 -25.35466 -24.44499 -24.22616 -23.25450 -22.99569 -21.79555 -20.61259 -19.66648 -18.48898 -18.39490 -18.01063 -17.47346 -17.10102 -16.88521 -16.58546 -16.37879 -16.00650 -15.82099 -15.47731 -15.39390 -15.12719 -14.91900 -14.89191 -14.70291 -14.15036 -14.07444 -13.69008 -13.43546 -13.34909 -13.04240 -12.92255 -12.81253 -12.70095 -12.50727 -12.29547 -12.24305 -12.10592 -11.87969 -11.67877 -11.48670 -11.42377 -11.18013 -11.12506 -10.61684 -9.85575 -9.36966 -9.14357 -9.00839 -8.21055 -6.31466 0.05956 0.23114 1.40318 1.43715 1.51631 2.14402 2.31280 2.39880 3.03440 3.11072 3.22651 3.30979 3.33742 3.51540 3.60932 3.75989 3.89668 4.00924 4.09992 4.22487 4.27338 4.32654 4.38175 4.41794 4.50114 4.56214 4.60535 4.63820 4.69045 4.79468 4.89039 4.91401 4.98464 5.02998 5.05329 5.06991 5.22064 5.27819 5.28620 5.35690 5.47794 5.63256 6.00308 6.01416 6.08042 6.10291 6.34656 6.63732 6.78696 6.82083 6.84179 7.38250 8.89979 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.002925 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.380598 B = 9569.405756 C =10940.336981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.544 5.544 11 C 0.073 3.927 12 C 0.075 3.925 13 N -0.536 5.536 14 C 0.111 3.889 15 C -0.141 4.141 16 C -0.032 4.032 17 C -0.202 4.202 18 C 0.122 3.878 19 C -0.189 4.189 20 C 0.173 3.827 21 O -0.495 6.495 22 O -0.320 6.320 23 C 0.017 3.983 24 C 0.121 3.879 25 H 0.112 0.888 26 O -0.574 6.574 27 C 0.073 3.927 28 C 0.055 3.945 29 H 0.265 0.735 30 H 0.005 0.995 31 H -0.041 1.041 32 H 0.014 0.986 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.410 0.590 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.402 0.598 44 H 0.040 0.960 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.225 -19.795 -8.956 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.084 3.916 10 N -0.270 5.270 11 C -0.056 4.056 12 C -0.053 4.053 13 N -0.261 5.261 14 C -0.016 4.016 15 C -0.142 4.142 16 C -0.051 4.051 17 C -0.203 4.203 18 C 0.076 3.924 19 C -0.208 4.208 20 C 0.128 3.872 21 O -0.308 6.308 22 O -0.234 6.234 23 C -0.057 4.057 24 C 0.062 3.938 25 H 0.130 0.870 26 O -0.384 6.384 27 C -0.055 4.055 28 C -0.074 4.074 29 H 0.074 0.926 30 H 0.023 0.977 31 H -0.023 1.023 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.152 0.848 43 H 0.254 0.746 44 H 0.058 0.942 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 17.690 -20.231 -8.747 28.262 hybrid contribution 0.075 1.613 -0.445 1.675 sum 17.765 -18.618 -9.192 27.326 Atomic orbital electron populations 1.70083 1.07744 1.27994 1.51674 1.25923 0.95756 1.03218 0.94737 0.85438 0.78186 0.77889 0.79139 1.20724 1.19193 1.19310 1.21425 0.93540 0.91144 1.50234 0.92043 1.19329 0.90046 0.88972 0.93285 1.62221 1.27314 1.03243 1.34177 1.21909 0.95614 0.98191 0.89852 1.21995 0.94591 0.88114 1.00587 1.62122 1.26186 1.02822 1.34997 1.20797 0.94289 0.94660 0.91850 1.20006 0.94634 1.02634 0.96912 1.20287 0.93939 0.95360 0.95528 1.20714 0.98309 1.06343 0.94945 1.19436 0.92948 0.94735 0.85267 1.20536 0.94774 1.07789 0.97730 1.17787 0.86120 0.93121 0.90216 1.84635 1.13835 1.42095 1.90206 1.86805 1.20235 1.88977 1.27402 1.24930 0.79386 1.02741 0.98666 1.21886 0.94461 0.82303 0.95149 0.87046 1.86631 1.47515 1.22356 1.81885 1.22080 0.95260 0.98291 0.89888 1.22171 0.95754 0.89361 1.00107 0.92645 0.97722 1.02342 0.96822 0.91931 0.94474 0.90436 0.93102 0.88546 0.84249 0.84329 0.73070 0.87204 0.84758 0.74625 0.94206 0.87982 0.91032 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.53 -30.52 8.47 25.60 0.22 -30.30 16 8 H 0.06 3.50 7.13 -2.91 -0.02 3.48 16 9 C 0.21 11.57 4.72 85.55 0.40 11.97 16 10 N -0.54 -24.34 4.70 -900.28 -4.23 -28.57 16 11 C 0.07 2.99 5.43 86.31 0.47 3.45 16 12 C 0.08 2.39 5.42 86.31 0.47 2.86 16 13 N -0.54 -14.48 4.70 -900.29 -4.23 -18.72 16 14 C 0.11 2.43 4.71 85.56 0.40 2.83 16 15 C -0.14 -3.19 4.45 -19.73 -0.09 -3.28 16 16 C -0.03 -0.70 9.00 22.17 0.20 -0.50 16 17 C -0.20 -4.33 5.98 -19.50 -0.12 -4.45 16 18 C 0.12 2.88 7.03 22.67 0.16 3.04 16 19 C -0.19 -4.48 10.00 22.54 0.23 -4.25 16 20 C 0.17 4.07 6.66 22.45 0.15 4.22 16 21 O -0.49 -10.87 12.82 -92.40 -1.18 -12.06 16 22 O -0.32 -6.93 11.10 -95.17 -1.06 -7.99 16 23 C 0.02 0.20 7.75 72.56 0.56 0.76 16 24 C 0.12 1.74 4.50 30.73 0.14 1.88 16 25 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 26 O -0.57 -9.65 13.43 -148.98 -2.00 -11.65 16 27 C 0.07 2.00 5.61 86.31 0.48 2.49 16 28 C 0.05 1.98 5.61 86.31 0.48 2.46 16 29 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 30 H 0.00 0.28 8.03 -2.38 -0.02 0.26 16 31 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 2.80 6.79 -2.39 -0.02 2.79 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 2.37 6.70 -2.39 -0.02 2.36 16 36 H 0.05 1.04 7.94 -2.39 -0.02 1.02 16 37 H 0.10 1.96 7.89 -2.39 -0.02 1.94 16 38 H 0.14 2.60 8.01 -2.91 -0.02 2.58 16 39 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.41 7.31 9.06 -74.06 -0.67 6.64 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.13 0.84 8.11 -2.39 -0.02 0.82 16 43 H 0.40 2.27 9.11 -74.06 -0.67 1.59 16 44 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16 46 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 47 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.03 379.96 -6.12 -81.15 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.35 Total: 14.08 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 4.62 Total: -6.26 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -8.18 Total: -104.29 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -4.24 Total: -31.69 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.03 -6.12 -81.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.113 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.61 seconds