Wall clock time and date at job start Tue Mar 31 2020 20:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35895 * 117.00089 * 2 1 4 4 C 1.38762 * 120.17555 * 359.97438 * 3 2 1 5 5 C 1.37830 * 119.71237 * 180.11509 * 4 3 2 6 6 C 1.38959 * 120.62602 * 0.03026 * 5 4 3 7 7 C 1.37716 * 119.77128 * 359.78432 * 6 5 4 8 8 C 1.38428 * 120.17309 * 180.02562 * 3 2 1 9 9 C 1.50641 * 122.56995 * 180.35434 * 7 6 5 10 10 C 1.52728 * 110.60046 * 342.43425 * 9 7 6 11 11 C 1.53339 * 108.37876 * 51.03730 * 10 9 7 12 12 H 1.09001 * 109.68544 * 49.82620 * 11 10 9 13 13 C 1.50703 * 109.68188 * 170.34986 * 11 10 9 14 14 O 1.20821 * 120.00140 * 359.97438 * 13 11 10 15 15 O 1.34227 * 119.99644 * 180.02562 * 13 11 10 16 16 C 1.45194 * 117.00087 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47550 * 179.97438 * 16 15 13 18 18 O 1.42903 * 109.46726 * 64.99819 * 17 16 15 19 19 C 1.42899 * 113.99629 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47140 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99703 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00389 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99589 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47527 * 89.99628 * 24 22 20 26 26 H 1.48497 * 109.47130 * 209.99469 * 24 22 20 27 27 H 1.48501 * 109.47103 * 329.99319 * 24 22 20 28 28 C 1.50648 * 117.68940 * 179.65812 * 6 5 4 29 29 H 1.08996 * 109.46745 * 300.00579 * 1 2 3 30 30 H 1.09001 * 109.46760 * 59.99798 * 1 2 3 31 31 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.14666 * 0.13572 * 4 3 2 33 33 H 1.07997 * 119.69015 * 180.02562 * 5 4 3 34 34 H 1.07995 * 119.74536 * 359.93622 * 8 3 2 35 35 H 1.09002 * 109.24651 * 222.15139 * 9 7 6 36 36 H 1.08997 * 109.25342 * 102.72413 * 9 7 6 37 37 H 1.09000 * 109.68708 * 291.31537 * 10 9 7 38 38 H 1.09000 * 109.68244 * 170.75836 * 10 9 7 39 39 H 1.09002 * 109.47291 * 59.99728 * 16 15 13 40 40 H 1.09002 * 109.47176 * 299.99736 * 16 15 13 41 41 H 1.09002 * 109.47398 * 185.00064 * 17 16 15 42 42 H 1.09001 * 109.47194 * 305.00244 * 17 16 15 43 43 H 1.09007 * 109.47484 * 299.99646 * 19 18 17 44 44 H 1.09004 * 109.47459 * 59.99983 * 19 18 17 45 45 H 0.97000 * 119.99632 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.24865 * 42.16566 * 28 6 5 47 47 H 1.08995 * 109.26831 * 282.73712 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2939 2.3769 -0.0005 5 6 1.9295 3.5999 -0.0029 6 6 3.3170 3.6765 -0.0055 7 6 4.0657 2.5207 -0.0011 8 6 3.4282 1.2874 -0.0005 9 6 5.5721 2.5302 0.0044 10 6 6.1024 3.8960 -0.4271 11 6 5.4060 4.9727 0.4138 12 1 5.4663 4.7098 1.4699 13 6 6.0711 6.3053 0.1837 14 8 7.0077 6.3901 -0.5748 15 8 5.6234 7.3979 0.8221 16 6 6.3121 8.6473 0.5528 17 6 5.6651 9.7717 1.3641 18 8 5.8595 9.5256 2.7583 19 6 5.2898 10.5222 3.6093 20 6 5.5538 10.1641 5.0491 21 1 6.1016 9.2650 5.2901 22 6 5.0952 10.9835 6.0587 23 7 4.4277 12.0780 5.7651 24 14 5.4232 10.5399 7.8433 25 1 6.7093 11.1438 8.2753 26 1 4.3221 11.0600 8.6931 27 1 5.4990 9.0631 7.9804 28 6 3.9424 5.0470 -0.0160 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2151 2.3265 0.0013 33 1 1.3438 4.5072 -0.0029 34 1 4.0151 0.3809 0.0001 35 1 5.9388 1.7686 -0.6838 36 1 5.9293 2.3073 1.0098 37 1 5.8852 4.0573 -1.4830 38 1 7.1789 3.9406 -0.2622 39 1 6.2414 8.8795 -0.5099 40 1 7.3607 8.5524 0.8349 41 1 6.1233 10.7236 1.0957 42 1 4.5975 9.8083 1.1471 43 1 5.7399 11.4900 3.3876 44 1 4.2144 10.5741 3.4387 45 1 4.1054 12.6547 6.4754 46 1 3.3986 5.6954 0.6711 47 1 3.8839 5.4614 -1.0224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884670877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:03 Heat of formation + Delta-G solvation = -165.074229 kcal Electronic energy + Delta-G solvation = -27790.694119 eV Core-core repulsion = 23710.215389 eV Total energy + Delta-G solvation = -4080.478730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97306 -40.25445 -38.72520 -37.12440 -36.11280 -35.36281 -32.95752 -32.75797 -30.49013 -29.96321 -29.48881 -27.40088 -26.90138 -24.61169 -23.59722 -22.53531 -22.44122 -22.04936 -20.92694 -19.60963 -18.01877 -17.66228 -16.82051 -16.74321 -16.39148 -16.12872 -16.02688 -15.56152 -15.18168 -15.06465 -14.64918 -14.45609 -14.18910 -14.04965 -13.97447 -13.62604 -13.43201 -13.16673 -12.76421 -12.62801 -12.46265 -12.32705 -12.13686 -11.95127 -11.53904 -11.42378 -11.34718 -11.17703 -10.97862 -10.92971 -10.84943 -10.76896 -10.66067 -10.37480 -10.23760 -10.03830 -9.13809 -9.02256 -8.88385 -8.29441 -8.22178 -6.12815 -4.14384 1.05565 1.16339 2.27370 2.77004 2.94436 3.29703 3.34700 3.40289 3.44288 4.26590 4.31950 4.37382 4.53829 4.60087 4.67781 4.73174 4.76900 4.78348 4.82288 4.88433 5.02345 5.09610 5.19423 5.22566 5.23443 5.23828 5.26590 5.37380 5.46117 5.60178 5.62169 5.67485 5.76101 5.86048 5.86655 5.93418 5.99849 6.04974 6.09600 6.13792 6.37564 6.53429 6.61969 7.04378 7.09963 7.38789 7.77246 7.86303 8.11705 8.51604 8.98203 9.50361 10.98725 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.002262 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.418357 B =12376.795936 C =13870.261284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.207 4.207 5 C -0.075 4.075 6 C -0.108 4.108 7 C -0.037 4.037 8 C -0.154 4.154 9 C -0.081 4.081 10 C -0.102 4.102 11 C -0.081 4.081 12 H 0.115 0.885 13 C 0.466 3.534 14 O -0.515 6.515 15 O -0.339 6.339 16 C 0.073 3.927 17 C 0.062 3.938 18 O -0.390 6.390 19 C 0.194 3.806 20 C -0.514 4.514 21 H 0.067 0.933 22 C 0.056 3.944 23 N -0.899 5.899 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.271 1.271 28 C -0.067 4.067 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.006 0.994 44 H 0.007 0.993 45 H 0.264 0.736 46 H 0.092 0.908 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 -21.691 -15.904 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.226 4.226 5 C -0.093 4.093 6 C -0.108 4.108 7 C -0.037 4.037 8 C -0.172 4.172 9 C -0.118 4.118 10 C -0.140 4.140 11 C -0.100 4.100 12 H 0.133 0.867 13 C 0.309 3.691 14 O -0.404 6.404 15 O -0.254 6.254 16 C 0.000 4.000 17 C -0.016 4.016 18 O -0.310 6.310 19 C 0.120 3.880 20 C -0.552 4.552 21 H 0.085 0.915 22 C -0.145 4.145 23 N -0.538 5.538 24 Si 0.736 3.264 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.196 1.196 28 C -0.104 4.104 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.399 -21.815 -15.958 27.563 hybrid contribution -0.354 0.449 0.818 0.998 sum -5.754 -21.366 -15.140 26.811 Atomic orbital electron populations 1.23049 0.78388 1.03876 1.01427 1.86055 1.21379 1.27025 1.88878 1.18904 0.92333 0.84113 0.96851 1.21156 1.00004 0.92315 1.09107 1.20964 0.93769 0.97364 0.97171 1.19411 0.93224 0.94179 1.03971 1.19419 0.95547 0.91431 0.97292 1.20353 0.91334 0.98073 1.07481 1.20527 0.90466 0.97877 1.02903 1.21468 1.00644 0.92024 0.99853 1.21062 0.95880 0.89224 1.03799 0.86714 1.23572 0.81740 0.86701 0.77075 1.90634 1.27889 1.86504 1.35380 1.86605 1.57637 1.17287 1.63891 1.23214 0.97236 0.80547 0.99025 1.22320 0.99381 0.94503 0.85396 1.87919 1.79213 1.50993 1.12917 1.20238 0.92665 0.86170 0.88920 1.21045 1.35728 1.09013 0.89460 0.91518 1.24954 0.94996 0.94822 0.99772 1.69962 1.37409 1.13246 1.33178 0.86324 0.77859 0.78876 0.83376 1.20459 1.21064 1.19586 1.20349 0.92856 0.94316 1.02883 0.92573 0.92675 0.88303 0.85465 0.85470 0.85297 0.89812 0.89764 0.90683 0.89901 0.90492 0.90512 0.92002 0.93218 0.97625 0.97492 0.92638 0.88924 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.32 -3.01 10.50 -19.41 -0.20 -3.22 16 3 C 0.12 1.23 6.68 -39.32 -0.26 0.97 16 4 C -0.21 -1.90 9.04 -39.54 -0.36 -2.25 16 5 C -0.07 -0.71 9.60 -39.46 -0.38 -1.09 16 6 C -0.11 -1.08 5.74 -104.57 -0.60 -1.68 16 7 C -0.04 -0.35 5.74 -104.62 -0.60 -0.96 16 8 C -0.15 -1.50 9.55 -39.29 -0.38 -1.87 16 9 C -0.08 -0.65 5.67 -28.05 -0.16 -0.81 16 10 C -0.10 -0.97 4.71 -26.70 -0.13 -1.10 16 11 C -0.08 -0.89 2.65 -91.74 -0.24 -1.14 16 12 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16 13 C 0.47 6.72 7.23 36.01 0.26 6.98 16 14 O -0.52 -8.33 15.60 -18.75 -0.29 -8.62 16 15 O -0.34 -5.54 10.14 -42.02 -0.43 -5.97 16 16 C 0.07 1.16 5.84 37.16 0.22 1.38 16 17 C 0.06 1.12 6.33 37.16 0.24 1.36 16 18 O -0.39 -9.44 10.30 -38.80 -0.40 -9.84 16 19 C 0.19 5.30 5.69 36.01 0.20 5.51 16 20 C -0.51 -15.16 9.43 -34.44 -0.32 -15.48 16 21 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 24 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 C -0.07 -0.68 4.93 -28.05 -0.14 -0.82 16 29 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 30 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.13 0.90 6.33 -52.49 -0.33 0.56 16 33 H 0.13 1.01 8.05 -52.49 -0.42 0.58 16 34 H 0.13 1.08 8.05 -52.49 -0.42 0.66 16 35 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 38 H 0.08 0.81 7.82 -51.93 -0.41 0.41 16 39 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 40 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 47 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -34.15 392.18 -8.86 -43.01 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.41 Total: -3.68 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.75 Total: -8.36 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.32 Total: -27.65 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.15 -8.86 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884670877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.067 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds