Wall clock time and date at job start Tue Mar 31 2020 20:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35895 * 117.00089 * 2 1 4 4 C 1.38762 * 120.17555 * 359.97438 * 3 2 1 5 5 C 1.37830 * 119.71237 * 180.11509 * 4 3 2 6 6 C 1.38959 * 120.62602 * 0.03026 * 5 4 3 7 7 C 1.37716 * 119.77128 * 359.78432 * 6 5 4 8 8 C 1.38428 * 120.17309 * 180.02562 * 3 2 1 9 9 C 1.50641 * 122.56995 * 180.35434 * 7 6 5 10 10 C 1.52728 * 110.60046 * 342.43425 * 9 7 6 11 11 C 1.53339 * 108.37876 * 51.03730 * 10 9 7 12 12 H 1.09001 * 109.68544 * 49.82620 * 11 10 9 13 13 C 1.50703 * 109.68188 * 170.34986 * 11 10 9 14 14 O 1.20821 * 120.00140 * 359.97438 * 13 11 10 15 15 O 1.34227 * 119.99644 * 180.02562 * 13 11 10 16 16 C 1.45194 * 117.00087 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47550 * 179.97438 * 16 15 13 18 18 O 1.42903 * 109.46726 * 64.99819 * 17 16 15 19 19 C 1.42899 * 113.99629 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47140 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99703 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00389 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99589 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47527 * 89.99628 * 24 22 20 26 26 H 1.48497 * 109.47130 * 209.99469 * 24 22 20 27 27 H 1.48501 * 109.47103 * 329.99319 * 24 22 20 28 28 C 1.50648 * 117.68940 * 179.65812 * 6 5 4 29 29 H 1.08996 * 109.46745 * 300.00579 * 1 2 3 30 30 H 1.09001 * 109.46760 * 59.99798 * 1 2 3 31 31 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.14666 * 0.13572 * 4 3 2 33 33 H 1.07997 * 119.69015 * 180.02562 * 5 4 3 34 34 H 1.07995 * 119.74536 * 359.93622 * 8 3 2 35 35 H 1.09002 * 109.24651 * 222.15139 * 9 7 6 36 36 H 1.08997 * 109.25342 * 102.72413 * 9 7 6 37 37 H 1.09000 * 109.68708 * 291.31537 * 10 9 7 38 38 H 1.09000 * 109.68244 * 170.75836 * 10 9 7 39 39 H 1.09002 * 109.47291 * 59.99728 * 16 15 13 40 40 H 1.09002 * 109.47176 * 299.99736 * 16 15 13 41 41 H 1.09002 * 109.47398 * 185.00064 * 17 16 15 42 42 H 1.09001 * 109.47194 * 305.00244 * 17 16 15 43 43 H 1.09007 * 109.47484 * 299.99646 * 19 18 17 44 44 H 1.09004 * 109.47459 * 59.99983 * 19 18 17 45 45 H 0.97000 * 119.99632 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.24865 * 42.16566 * 28 6 5 47 47 H 1.08995 * 109.26831 * 282.73712 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2939 2.3769 -0.0005 5 6 1.9295 3.5999 -0.0029 6 6 3.3170 3.6765 -0.0055 7 6 4.0657 2.5207 -0.0011 8 6 3.4282 1.2874 -0.0005 9 6 5.5721 2.5302 0.0044 10 6 6.1024 3.8960 -0.4271 11 6 5.4060 4.9727 0.4138 12 1 5.4663 4.7098 1.4699 13 6 6.0711 6.3053 0.1837 14 8 7.0077 6.3901 -0.5748 15 8 5.6234 7.3979 0.8221 16 6 6.3121 8.6473 0.5528 17 6 5.6651 9.7717 1.3641 18 8 5.8595 9.5256 2.7583 19 6 5.2898 10.5222 3.6093 20 6 5.5538 10.1641 5.0491 21 1 6.1016 9.2650 5.2901 22 6 5.0952 10.9835 6.0587 23 7 4.4277 12.0780 5.7651 24 14 5.4232 10.5399 7.8433 25 1 6.7093 11.1438 8.2753 26 1 4.3221 11.0600 8.6931 27 1 5.4990 9.0631 7.9804 28 6 3.9424 5.0470 -0.0160 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2151 2.3265 0.0013 33 1 1.3438 4.5072 -0.0029 34 1 4.0151 0.3809 0.0001 35 1 5.9388 1.7686 -0.6838 36 1 5.9293 2.3073 1.0098 37 1 5.8852 4.0573 -1.4830 38 1 7.1789 3.9406 -0.2622 39 1 6.2414 8.8795 -0.5099 40 1 7.3607 8.5524 0.8349 41 1 6.1233 10.7236 1.0957 42 1 4.5975 9.8083 1.1471 43 1 5.7399 11.4900 3.3876 44 1 4.2144 10.5741 3.4387 45 1 4.1054 12.6547 6.4754 46 1 3.3986 5.6954 0.6711 47 1 3.8839 5.4614 -1.0224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884670877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:56 Heat of formation + Delta-G solvation = -183.938508 kcal Electronic energy + Delta-G solvation = -27791.512136 eV Core-core repulsion = 23710.215389 eV Total energy + Delta-G solvation = -4081.296746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 6.38 seconds Orbital eigenvalues (eV) -41.91945 -41.14774 -39.49107 -38.72532 -37.50581 -36.19959 -34.94780 -33.66983 -31.78757 -30.86113 -30.27933 -29.02224 -27.90926 -25.51856 -24.61411 -24.37681 -23.36962 -23.21567 -21.94487 -20.42560 -18.89444 -18.69176 -18.56987 -17.97822 -17.69217 -17.28926 -16.83773 -16.63180 -16.45103 -16.35065 -16.00846 -15.78063 -15.30526 -14.96688 -14.78065 -14.64449 -14.43168 -14.15958 -14.06689 -13.75996 -13.55600 -13.26846 -13.13812 -12.94158 -12.91553 -12.78637 -12.70132 -12.47047 -12.31254 -12.08219 -11.97155 -11.94744 -11.71059 -11.62659 -11.40978 -11.34170 -11.27386 -10.89312 -10.27161 -9.71419 -9.00453 -8.32621 -6.44552 0.35837 0.43634 1.12547 1.40394 1.42861 1.55015 1.64893 2.34354 2.37854 2.73148 3.01317 3.06392 3.39955 3.58136 3.75411 3.88931 3.93000 3.97804 4.05624 4.10395 4.11440 4.19671 4.34384 4.39686 4.41281 4.42404 4.50936 4.54244 4.57535 4.63286 4.68692 4.74028 4.85427 4.86462 4.89220 5.00844 5.06880 5.12230 5.17497 5.24587 5.34204 5.41766 5.45374 5.54162 5.66441 5.84690 5.94939 6.46381 6.49589 6.68811 6.79587 7.26909 8.79509 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.002262 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.418357 B =12376.795936 C =13870.261284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.122 4.122 7 C -0.042 4.042 8 C -0.165 4.165 9 C -0.076 4.076 10 C -0.096 4.096 11 C -0.078 4.078 12 H 0.118 0.882 13 C 0.467 3.533 14 O -0.534 6.534 15 O -0.356 6.356 16 C 0.077 3.923 17 C 0.053 3.947 18 O -0.409 6.409 19 C 0.208 3.792 20 C -0.549 4.549 21 H 0.060 0.940 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.982 3.018 25 H -0.268 1.268 26 H -0.273 1.273 27 H -0.265 1.265 28 C -0.061 4.061 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.057 0.943 43 H -0.008 1.008 44 H -0.010 1.010 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.051 -22.924 -15.639 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.067 3.933 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.042 4.042 8 C -0.184 4.184 9 C -0.112 4.112 10 C -0.134 4.134 11 C -0.097 4.097 12 H 0.136 0.864 13 C 0.311 3.689 14 O -0.424 6.424 15 O -0.272 6.272 16 C 0.003 3.997 17 C -0.023 4.023 18 O -0.329 6.329 19 C 0.133 3.867 20 C -0.587 4.587 21 H 0.078 0.922 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.805 3.195 25 H -0.193 1.193 26 H -0.198 1.198 27 H -0.190 1.190 28 C -0.098 4.098 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.010 0.990 44 H 0.008 0.992 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.696 -23.056 -15.718 28.480 hybrid contribution -0.315 0.813 0.635 1.078 sum -6.011 -22.243 -15.083 27.539 Atomic orbital electron populations 1.23314 0.76611 1.05469 1.02131 1.86033 1.23312 1.26883 1.88806 1.19121 0.92721 0.84641 0.96823 1.21380 1.01040 0.91920 1.08653 1.21175 0.93798 0.98108 0.97025 1.19478 0.93687 0.94076 1.04939 1.19588 0.96298 0.91304 0.97027 1.20549 0.91678 0.98490 1.07664 1.20537 0.89523 0.97314 1.03859 1.21440 1.00306 0.92229 0.99420 1.21177 0.96430 0.87674 1.04377 0.86402 1.24183 0.81424 0.86997 0.76247 1.90618 1.28797 1.86739 1.36210 1.86606 1.58086 1.17940 1.64604 1.23184 0.96395 0.79967 1.00118 1.22647 1.00504 0.96653 0.82520 1.87863 1.79052 1.50264 1.15718 1.19872 0.91503 0.86203 0.89130 1.21375 1.36829 1.09408 0.91061 0.92223 1.25941 0.94151 0.94400 1.04689 1.70059 1.37639 1.14031 1.35059 0.85199 0.78324 0.78879 0.77123 1.19305 1.19822 1.18973 1.20274 0.92029 0.94594 1.02862 0.92014 0.91770 0.86391 0.83642 0.84339 0.84336 0.88027 0.88912 0.90870 0.90164 0.87385 0.91123 0.90134 0.92478 0.99032 0.99213 0.92001 0.89524 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 113.37 1.11 1.30 16 2 O -0.34 -5.96 10.50 -92.37 -0.97 -6.93 16 3 C 0.11 2.13 6.68 22.44 0.15 2.28 16 4 C -0.21 -3.63 9.04 22.30 0.20 -3.43 16 5 C -0.08 -1.51 9.60 22.35 0.21 -1.29 16 6 C -0.12 -2.36 5.74 -19.83 -0.11 -2.47 16 7 C -0.04 -0.77 5.74 -19.87 -0.11 -0.88 16 8 C -0.17 -3.06 9.55 22.46 0.21 -2.84 16 9 C -0.08 -1.11 5.67 29.74 0.17 -0.94 16 10 C -0.10 -1.74 4.71 30.62 0.14 -1.59 16 11 C -0.08 -1.68 2.65 -11.52 -0.03 -1.71 16 12 H 0.12 2.49 8.10 -2.39 -0.02 2.47 16 13 C 0.47 13.28 7.23 71.24 0.52 13.79 16 14 O -0.53 -16.96 15.60 21.98 0.34 -16.62 16 15 O -0.36 -11.58 10.14 -48.74 -0.49 -12.08 16 16 C 0.08 2.37 5.84 71.98 0.42 2.79 16 17 C 0.05 1.93 6.33 71.98 0.46 2.39 16 18 O -0.41 -20.07 10.30 -145.57 -1.50 -21.57 16 19 C 0.21 11.62 5.69 71.24 0.41 12.03 16 20 C -0.55 -32.83 9.43 25.60 0.24 -32.59 16 21 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 22 C 0.01 0.39 5.46 84.66 0.46 0.86 16 23 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 24 Si 0.98 44.34 29.54 68.60 2.03 46.37 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 C -0.06 -1.20 4.93 29.74 0.15 -1.05 16 29 H 0.06 0.52 7.67 -2.39 -0.02 0.51 16 30 H 0.06 0.50 7.67 -2.39 -0.02 0.48 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.15 1.82 6.33 -2.91 -0.02 1.81 16 33 H 0.14 2.07 8.05 -2.91 -0.02 2.05 16 34 H 0.14 2.17 8.05 -2.91 -0.02 2.15 16 35 H 0.10 1.15 8.12 -2.39 -0.02 1.13 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.34 8.10 -2.39 -0.02 1.33 16 38 H 0.08 1.50 7.82 -2.39 -0.02 1.48 16 39 H 0.11 2.67 8.13 -2.39 -0.02 2.65 16 40 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 44 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 45 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.09 1.80 8.12 -2.39 -0.02 1.78 16 47 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 Total: -1.00 -72.86 392.18 5.24 -67.62 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.95 Total: 11.76 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.59 Total: -13.38 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.28 Total: -55.17 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -2.62 Total: -57.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -72.86 5.24 -67.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884670877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.317 kcal (2) G-P(sol) polarization free energy of solvation -72.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.38 seconds