Wall clock time and date at job start Tue Mar 31 2020 23:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 120.00391 * 2 1 4 4 H 1.48494 * 109.47468 * 274.73117 * 3 2 1 5 5 H 1.48499 * 109.46665 * 34.73219 * 3 2 1 6 6 H 1.48499 * 109.47210 * 154.72655 * 3 2 1 7 7 C 1.39900 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99770 * 160.63631 * 7 2 1 9 9 C 1.41152 * 119.99861 * 340.64129 * 7 2 1 10 10 C 1.40871 * 120.16539 * 156.05392 * 9 7 2 11 11 C 1.36376 * 119.82980 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16822 * 0.02562 * 11 10 9 13 13 N 1.39243 * 119.83324 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99641 * 146.97742 * 13 12 11 15 15 O 1.21573 * 120.00291 * 354.59109 * 14 13 12 16 16 N 1.34778 * 119.99738 * 174.58628 * 14 13 12 17 17 C 1.46502 * 120.00061 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.46946 * 35.00241 * 17 16 14 19 19 C 1.53003 * 109.47249 * 275.00379 * 17 16 14 20 20 O 1.42899 * 109.46778 * 294.99734 * 19 17 16 21 21 C 1.53002 * 109.46990 * 155.00395 * 17 16 14 22 22 C 1.53007 * 109.47011 * 295.00061 * 21 17 16 23 23 H 1.09001 * 110.35101 * 304.31233 * 22 21 17 24 24 C 1.55495 * 110.28117 * 182.20660 * 22 21 17 25 25 C 1.55310 * 100.69448 * 204.65116 * 24 22 21 26 26 C 1.54384 * 102.43235 * 34.13086 * 25 24 22 27 27 O 1.43236 * 107.59298 * 338.53914 * 26 25 24 28 28 C 1.39481 * 120.33260 * 0.27365 * 12 11 10 29 29 C 1.36376 * 120.16764 * 359.44476 * 28 12 11 30 30 H 0.97004 * 119.99931 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.08317 * 0.04446 * 10 9 7 32 32 H 1.07999 * 119.91271 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99684 * 326.98376 * 13 12 11 34 34 H 0.97005 * 120.00158 * 0.02562 * 16 14 13 35 35 H 1.09003 * 109.46787 * 54.99861 * 19 17 16 36 36 H 1.08992 * 109.46845 * 175.00024 * 19 17 16 37 37 H 0.96707 * 113.99612 * 179.97438 * 20 19 17 38 38 H 1.09000 * 109.46930 * 175.00379 * 21 17 16 39 39 H 1.08990 * 109.47198 * 54.99835 * 21 17 16 40 40 H 1.08999 * 111.33388 * 86.78356 * 24 22 21 41 41 H 1.08998 * 111.14755 * 322.44837 * 24 22 21 42 42 H 1.08992 * 110.84691 * 275.83863 * 25 24 22 43 43 H 1.08995 * 110.84699 * 152.41652 * 25 24 22 44 44 H 1.08996 * 109.83044 * 98.05490 * 26 25 24 45 45 H 1.09005 * 109.82919 * 219.02924 * 26 25 24 46 46 H 1.08003 * 119.91394 * 179.72320 * 28 12 11 47 47 H 1.08006 * 120.08323 * 180.27601 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3905 2.1041 -1.3952 5 1 1.4939 2.6216 0.7977 6 1 3.5868 1.4132 0.5977 7 6 2.0082 -1.2116 -0.0005 8 1 3.0424 -1.2379 -0.3107 9 6 1.3622 -2.3996 0.4041 10 6 1.8331 -3.6493 -0.0441 11 6 1.2034 -4.7928 0.3508 12 6 0.0957 -4.7270 1.1957 13 7 -0.5422 -5.8989 1.5941 14 6 -1.1061 -5.9773 2.8157 15 8 -0.9736 -5.0632 3.6062 16 7 -1.8169 -7.0691 3.1609 17 6 -2.4294 -7.1547 4.4890 18 1 -2.7615 -6.1643 4.8004 19 6 -1.4026 -7.6867 5.4909 20 8 -1.0542 -9.0295 5.1481 21 6 -3.6296 -8.1022 4.4371 22 6 -4.7097 -7.5079 3.5307 23 1 -4.9819 -6.5086 3.8704 24 6 -5.9617 -8.4297 3.5083 25 6 -6.5827 -8.0391 2.1394 26 6 -5.3343 -7.7494 1.2786 27 8 -4.2503 -7.4641 2.1704 28 6 -0.3801 -3.4930 1.6386 29 6 0.2426 -2.3413 1.2569 30 1 -0.4850 0.8401 -0.0004 31 1 2.6907 -3.7018 -0.6985 32 1 1.5635 -5.7517 0.0083 33 1 -0.5807 -6.6587 0.9924 34 1 -1.9224 -7.7986 2.5303 35 1 -0.5103 -7.0613 5.4632 36 1 -1.8294 -7.6668 6.4936 37 1 -0.4054 -9.4313 5.7420 38 1 -4.0312 -8.2353 5.4416 39 1 -3.3138 -9.0672 4.0411 40 1 -6.6406 -8.1964 4.3285 41 1 -5.6760 -9.4815 3.5244 42 1 -7.2033 -7.1483 2.2351 43 1 -7.1569 -8.8670 1.7236 44 1 -5.0935 -8.6216 0.6710 45 1 -5.5202 -6.8891 0.6355 46 1 -1.2412 -3.4497 2.2892 47 1 -0.1243 -1.3867 1.6043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887214010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:43 Heat of formation + Delta-G solvation = -106.595418 kcal Electronic energy + Delta-G solvation = -28973.535823 eV Core-core repulsion = 24927.885675 eV Total energy + Delta-G solvation = -4045.650147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.07852 -39.36057 -37.72781 -36.84710 -34.81059 -34.14297 -32.88265 -32.39917 -31.49175 -29.37636 -29.18817 -28.30896 -25.72042 -24.78309 -22.39923 -21.70187 -21.37475 -21.06109 -20.44866 -19.75160 -17.91408 -17.28894 -17.19894 -17.09452 -16.41491 -16.06568 -15.44857 -15.04380 -14.94732 -14.74560 -14.23800 -13.84605 -13.80823 -13.61493 -13.38108 -13.23771 -12.84191 -12.63663 -12.42344 -12.14253 -11.93909 -11.91693 -11.73935 -11.58039 -11.31800 -11.21167 -11.05217 -11.03853 -10.98454 -10.77950 -10.57270 -10.07956 -9.86337 -9.60150 -9.56127 -9.34793 -8.98341 -8.77858 -8.57034 -7.38510 -6.85169 -6.62029 -4.16584 2.79900 3.13297 3.14737 3.20340 3.22663 3.33226 3.65573 3.91923 4.01309 4.23680 4.26188 4.33334 4.64241 4.74989 4.78355 4.90665 4.96200 4.98597 5.17555 5.27360 5.31843 5.39911 5.44650 5.52964 5.59663 5.67625 5.72051 5.81752 5.83522 5.85436 6.10594 6.28309 6.51609 6.90642 6.93203 6.99575 7.04999 7.17442 7.24158 7.44333 7.50954 7.56126 7.74868 8.04572 8.15766 8.18460 8.39227 8.74393 8.75149 9.00132 9.07166 9.35500 10.27824 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.002629 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.644153 B =10649.594182 C =11433.809680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.216 4.216 11 C -0.110 4.110 12 C 0.022 3.978 13 N -0.667 5.667 14 C 0.699 3.301 15 O -0.589 6.589 16 N -0.726 5.726 17 C 0.174 3.826 18 H 0.097 0.903 19 C 0.060 3.940 20 O -0.569 6.569 21 C -0.120 4.120 22 C 0.081 3.919 23 H 0.070 0.930 24 C -0.151 4.151 25 C -0.157 4.157 26 C 0.050 3.950 27 O -0.367 6.367 28 C -0.086 4.086 29 C -0.155 4.155 30 H 0.279 0.721 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.390 0.610 34 H 0.398 0.602 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.375 0.625 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.102 0.898 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 -17.657 7.871 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.236 4.236 11 C -0.131 4.131 12 C -0.071 4.071 13 N -0.313 5.313 14 C 0.400 3.600 15 O -0.467 6.467 16 N -0.382 5.382 17 C 0.068 3.932 18 H 0.115 0.885 19 C -0.019 4.019 20 O -0.374 6.374 21 C -0.158 4.158 22 C 0.023 3.977 23 H 0.088 0.912 24 C -0.189 4.189 25 C -0.194 4.194 26 C -0.027 4.027 27 O -0.286 6.286 28 C -0.107 4.107 29 C -0.175 4.175 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.222 0.778 34 H 0.232 0.768 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.221 0.779 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.120 0.880 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.164 -16.490 8.042 22.013 hybrid contribution 0.356 -0.069 -0.144 0.390 sum -11.808 -16.559 7.898 21.818 Atomic orbital electron populations 1.69872 1.07576 1.29064 1.35184 1.25902 0.94668 1.01240 0.92371 0.86363 0.80859 0.80954 0.78898 1.19695 1.20102 1.18469 1.19495 0.98641 0.91547 1.39400 0.90541 1.17628 0.91443 0.91998 0.88959 1.20492 1.03816 0.92505 1.06758 1.19990 0.94972 0.97090 1.01022 1.16982 0.98056 0.84195 1.07888 1.42071 1.58392 1.16112 1.14678 1.15974 0.79161 0.82602 0.82303 1.90884 1.65715 1.38946 1.51172 1.44881 1.56402 1.20584 1.16299 1.20709 0.90789 0.99198 0.82536 0.88544 1.22752 0.98914 0.83287 0.96954 1.86455 1.65052 1.28094 1.57814 1.21956 0.94203 0.99977 0.99668 1.23115 0.92778 0.98173 0.83611 0.91182 1.23398 0.97182 1.00638 0.97675 1.23107 0.98318 1.02295 0.95720 1.23100 0.86120 1.00522 0.92984 1.88499 1.33036 1.92061 1.15035 1.20448 0.99370 0.91217 0.99636 1.20954 0.99366 0.96772 1.00404 0.90995 0.88793 0.89368 0.77769 0.76777 0.92626 0.93310 0.77920 0.89511 0.89764 0.90065 0.90298 0.90655 0.90291 0.91529 0.91500 0.87953 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.24 11.00 55.55 0.61 -20.63 16 2 C 0.08 1.97 5.11 -17.34 -0.09 1.88 16 3 Si 0.90 19.28 29.60 -169.99 -5.03 14.25 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.66 9.03 -37.85 -0.34 -13.01 16 8 H 0.08 2.01 7.92 -52.49 -0.42 1.59 16 9 C 0.10 2.85 5.58 -106.80 -0.60 2.26 16 10 C -0.22 -5.47 9.74 -39.26 -0.38 -5.85 16 11 C -0.11 -2.56 9.89 -39.79 -0.39 -2.96 16 12 C 0.02 0.52 6.29 -83.57 -0.53 -0.01 16 13 N -0.67 -13.03 5.32 -14.10 -0.07 -13.10 16 14 C 0.70 13.56 8.25 -86.92 -0.72 12.84 16 15 O -0.59 -13.75 13.66 5.30 0.07 -13.68 16 16 N -0.73 -10.59 3.89 -58.68 -0.23 -10.82 16 17 C 0.17 2.15 2.37 -67.93 -0.16 1.99 16 18 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 19 C 0.06 0.67 6.85 37.16 0.25 0.93 16 20 O -0.57 -5.80 12.83 -35.23 -0.45 -6.25 16 21 C -0.12 -1.11 4.30 -26.73 -0.12 -1.22 16 22 C 0.08 0.78 3.44 -25.40 -0.09 0.70 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -1.08 6.61 -24.18 -0.16 -1.24 16 25 C -0.16 -1.14 7.00 -24.78 -0.17 -1.31 16 26 C 0.05 0.47 7.80 37.88 0.30 0.76 16 27 O -0.37 -4.37 8.99 -35.23 -0.32 -4.69 16 28 C -0.09 -2.28 8.57 -39.79 -0.34 -2.62 16 29 C -0.16 -4.33 8.65 -39.26 -0.34 -4.67 16 30 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 31 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.39 6.27 8.83 -40.82 -0.36 5.91 16 34 H 0.40 5.28 7.76 -40.82 -0.32 4.96 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.37 2.33 9.12 45.56 0.42 2.75 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.82 7.73 -51.93 -0.40 0.42 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.52 8.06 -51.93 -0.42 0.11 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 2.74 6.39 -52.48 -0.34 2.40 16 47 H 0.12 3.40 6.16 -52.48 -0.32 3.07 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -33.33 383.31 -9.85 -43.18 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -6.33 Total: 17.48 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.87 Total: -11.52 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.31 Total: -44.55 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.70 Total: -24.61 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.33 -9.85 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887214010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.418 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds