Wall clock time and date at job start Tue Mar 31 2020 23:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 120.00391 * 2 1 4 4 H 1.48494 * 109.47468 * 274.73117 * 3 2 1 5 5 H 1.48499 * 109.46665 * 34.73219 * 3 2 1 6 6 H 1.48499 * 109.47210 * 154.72655 * 3 2 1 7 7 C 1.39900 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99770 * 160.63631 * 7 2 1 9 9 C 1.41152 * 119.99861 * 340.64129 * 7 2 1 10 10 C 1.40871 * 120.16539 * 156.05392 * 9 7 2 11 11 C 1.36376 * 119.82980 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16822 * 0.02562 * 11 10 9 13 13 N 1.39243 * 119.83324 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99641 * 146.97742 * 13 12 11 15 15 O 1.21573 * 120.00291 * 354.59109 * 14 13 12 16 16 N 1.34778 * 119.99738 * 174.58628 * 14 13 12 17 17 C 1.46502 * 120.00061 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.46946 * 35.00241 * 17 16 14 19 19 C 1.53003 * 109.47249 * 275.00379 * 17 16 14 20 20 O 1.42899 * 109.46778 * 294.99734 * 19 17 16 21 21 C 1.53002 * 109.46990 * 155.00395 * 17 16 14 22 22 C 1.53007 * 109.47011 * 295.00061 * 21 17 16 23 23 H 1.09001 * 110.35101 * 304.31233 * 22 21 17 24 24 C 1.55495 * 110.28117 * 182.20660 * 22 21 17 25 25 C 1.55310 * 100.69448 * 204.65116 * 24 22 21 26 26 C 1.54384 * 102.43235 * 34.13086 * 25 24 22 27 27 O 1.43236 * 107.59298 * 338.53914 * 26 25 24 28 28 C 1.39481 * 120.33260 * 0.27365 * 12 11 10 29 29 C 1.36376 * 120.16764 * 359.44476 * 28 12 11 30 30 H 0.97004 * 119.99931 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.08317 * 0.04446 * 10 9 7 32 32 H 1.07999 * 119.91271 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99684 * 326.98376 * 13 12 11 34 34 H 0.97005 * 120.00158 * 0.02562 * 16 14 13 35 35 H 1.09003 * 109.46787 * 54.99861 * 19 17 16 36 36 H 1.08992 * 109.46845 * 175.00024 * 19 17 16 37 37 H 0.96707 * 113.99612 * 179.97438 * 20 19 17 38 38 H 1.09000 * 109.46930 * 175.00379 * 21 17 16 39 39 H 1.08990 * 109.47198 * 54.99835 * 21 17 16 40 40 H 1.08999 * 111.33388 * 86.78356 * 24 22 21 41 41 H 1.08998 * 111.14755 * 322.44837 * 24 22 21 42 42 H 1.08992 * 110.84691 * 275.83863 * 25 24 22 43 43 H 1.08995 * 110.84699 * 152.41652 * 25 24 22 44 44 H 1.08996 * 109.83044 * 98.05490 * 26 25 24 45 45 H 1.09005 * 109.82919 * 219.02924 * 26 25 24 46 46 H 1.08003 * 119.91394 * 179.72320 * 28 12 11 47 47 H 1.08006 * 120.08323 * 180.27601 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3905 2.1041 -1.3952 5 1 1.4939 2.6216 0.7977 6 1 3.5868 1.4132 0.5977 7 6 2.0082 -1.2116 -0.0005 8 1 3.0424 -1.2379 -0.3107 9 6 1.3622 -2.3996 0.4041 10 6 1.8331 -3.6493 -0.0441 11 6 1.2034 -4.7928 0.3508 12 6 0.0957 -4.7270 1.1957 13 7 -0.5422 -5.8989 1.5941 14 6 -1.1061 -5.9773 2.8157 15 8 -0.9736 -5.0632 3.6062 16 7 -1.8169 -7.0691 3.1609 17 6 -2.4294 -7.1547 4.4890 18 1 -2.7615 -6.1643 4.8004 19 6 -1.4026 -7.6867 5.4909 20 8 -1.0542 -9.0295 5.1481 21 6 -3.6296 -8.1022 4.4371 22 6 -4.7097 -7.5079 3.5307 23 1 -4.9819 -6.5086 3.8704 24 6 -5.9617 -8.4297 3.5083 25 6 -6.5827 -8.0391 2.1394 26 6 -5.3343 -7.7494 1.2786 27 8 -4.2503 -7.4641 2.1704 28 6 -0.3801 -3.4930 1.6386 29 6 0.2426 -2.3413 1.2569 30 1 -0.4850 0.8401 -0.0004 31 1 2.6907 -3.7018 -0.6985 32 1 1.5635 -5.7517 0.0083 33 1 -0.5807 -6.6587 0.9924 34 1 -1.9224 -7.7986 2.5303 35 1 -0.5103 -7.0613 5.4632 36 1 -1.8294 -7.6668 6.4936 37 1 -0.4054 -9.4313 5.7420 38 1 -4.0312 -8.2353 5.4416 39 1 -3.3138 -9.0672 4.0411 40 1 -6.6406 -8.1964 4.3285 41 1 -5.6760 -9.4815 3.5244 42 1 -7.2033 -7.1483 2.2351 43 1 -7.1569 -8.8670 1.7236 44 1 -5.0935 -8.6216 0.6710 45 1 -5.5202 -6.8891 0.6355 46 1 -1.2412 -3.4497 2.2892 47 1 -0.1243 -1.3867 1.6043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887214010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:42 Heat of formation + Delta-G solvation = -130.672493 kcal Electronic energy + Delta-G solvation = -28974.579883 eV Core-core repulsion = 24927.885675 eV Total energy + Delta-G solvation = -4046.694208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.00 seconds Orbital eigenvalues (eV) -41.44009 -40.37236 -39.29295 -38.10989 -36.20578 -35.66721 -34.70140 -33.20392 -32.52547 -31.36446 -30.74893 -29.59715 -26.69087 -26.47538 -23.68226 -23.11265 -22.61769 -22.22729 -21.59432 -21.38356 -19.37826 -19.16489 -18.31784 -18.14210 -17.70416 -17.08091 -16.84063 -16.51726 -16.08101 -15.81043 -15.73729 -15.53455 -14.96830 -14.81957 -14.60017 -14.46301 -14.11830 -13.95606 -13.89046 -13.66018 -13.31050 -13.18095 -12.94280 -12.85281 -12.75292 -12.58498 -12.39852 -12.33304 -12.03838 -11.75124 -11.65851 -11.58521 -11.49421 -11.18189 -10.96850 -10.85080 -10.63328 -10.40040 -9.88429 -9.42077 -8.80091 -8.55907 -6.21894 0.90717 1.17073 1.38429 1.47908 1.55196 1.90927 2.21875 2.32187 2.79815 2.92660 3.42130 3.49887 3.57558 3.63812 3.78576 4.03521 4.07550 4.15952 4.25126 4.43148 4.45383 4.46881 4.49678 4.55949 4.60435 4.81359 4.86729 4.89341 4.92034 4.96335 5.00108 5.05562 5.11820 5.19502 5.23584 5.32600 5.33606 5.49381 5.68662 5.71490 5.83847 6.12039 6.17399 6.18998 6.32009 6.40691 6.71300 6.89355 6.95746 7.05453 7.27697 7.79001 8.35343 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.002629 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.644153 B =10649.594182 C =11433.809680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.080 0.920 9 C 0.071 3.929 10 C -0.223 4.223 11 C -0.104 4.104 12 C 0.032 3.968 13 N -0.661 5.661 14 C 0.695 3.305 15 O -0.632 6.632 16 N -0.704 5.704 17 C 0.164 3.836 18 H 0.074 0.926 19 C 0.069 3.931 20 O -0.575 6.575 21 C -0.105 4.105 22 C 0.071 3.929 23 H 0.054 0.946 24 C -0.140 4.140 25 C -0.152 4.152 26 C 0.041 3.959 27 O -0.395 6.395 28 C -0.100 4.100 29 C -0.179 4.179 30 H 0.287 0.713 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.409 0.591 34 H 0.407 0.593 35 H 0.022 0.978 36 H 0.079 0.921 37 H 0.393 0.607 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 -19.965 8.166 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.068 3.932 10 C -0.243 4.243 11 C -0.124 4.124 12 C -0.062 4.062 13 N -0.308 5.308 14 C 0.395 3.605 15 O -0.513 6.513 16 N -0.359 5.359 17 C 0.058 3.942 18 H 0.092 0.908 19 C -0.010 4.010 20 O -0.383 6.383 21 C -0.142 4.142 22 C 0.014 3.986 23 H 0.072 0.928 24 C -0.178 4.178 25 C -0.190 4.190 26 C -0.036 4.036 27 O -0.316 6.316 28 C -0.120 4.120 29 C -0.199 4.199 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.245 0.755 34 H 0.244 0.756 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.243 0.757 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.511 -18.892 8.338 24.144 hybrid contribution 0.385 0.489 -0.199 0.653 sum -12.126 -18.403 8.139 23.494 Atomic orbital electron populations 1.69938 1.09212 1.30460 1.35587 1.26830 0.95437 1.04765 0.91270 0.85194 0.79167 0.75874 0.79464 1.18327 1.19378 1.18176 1.19775 0.99046 0.92634 1.41081 0.90176 1.17967 0.91936 0.93578 0.89684 1.20780 1.04389 0.92345 1.06782 1.20330 0.93946 0.98330 0.99838 1.17038 0.97852 0.84663 1.06689 1.41888 1.58161 1.15482 1.15315 1.16183 0.79287 0.83179 0.81805 1.90861 1.67207 1.40856 1.52407 1.44786 1.54604 1.19109 1.17417 1.20974 0.92498 0.99297 0.81419 0.90778 1.22537 0.97208 0.83310 0.97941 1.86401 1.65859 1.27154 1.58857 1.21900 0.92455 0.98695 1.01184 1.23234 0.94298 0.98229 0.82835 0.92846 1.23364 0.95885 1.00491 0.98033 1.23101 0.97384 1.02988 0.95499 1.23229 0.86842 1.00364 0.93129 1.88453 1.34526 1.92301 1.16275 1.20435 0.99268 0.92270 1.00050 1.20834 1.00701 0.96417 1.01946 0.90281 0.87141 0.85127 0.75462 0.75625 0.95957 0.90289 0.75725 0.86661 0.89444 0.88376 0.89134 0.90858 0.88342 0.90464 0.92926 0.89334 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.96 11.00 21.82 0.24 -45.72 16 2 C 0.03 1.68 5.11 85.24 0.44 2.11 16 3 Si 0.98 40.07 29.60 68.60 2.03 42.10 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.50 -28.00 9.03 23.39 0.21 -27.79 16 8 H 0.08 4.29 7.92 -2.91 -0.02 4.27 16 9 C 0.07 4.08 5.58 -21.28 -0.12 3.97 16 10 C -0.22 -11.31 9.74 22.48 0.22 -11.09 16 11 C -0.10 -4.72 9.89 22.13 0.22 -4.50 16 12 C 0.03 1.52 6.29 38.56 0.24 1.76 16 13 N -0.66 -25.48 5.32 -316.79 -1.68 -27.17 16 14 C 0.69 27.22 8.25 179.05 1.48 28.70 16 15 O -0.63 -30.59 13.66 -3.95 -0.05 -30.65 16 16 N -0.70 -20.18 3.89 -457.82 -1.78 -21.96 16 17 C 0.16 3.92 2.37 44.99 0.11 4.03 16 18 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 19 C 0.07 1.46 6.85 71.98 0.49 1.95 16 20 O -0.58 -10.27 12.83 -148.98 -1.91 -12.18 16 21 C -0.10 -1.70 4.30 30.60 0.13 -1.57 16 22 C 0.07 1.29 3.44 31.46 0.11 1.40 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 C -0.14 -1.61 6.61 32.25 0.21 -1.40 16 25 C -0.15 -1.91 7.00 31.86 0.22 -1.68 16 26 C 0.04 0.74 7.80 72.45 0.56 1.30 16 27 O -0.40 -9.16 8.99 -148.98 -1.34 -10.50 16 28 C -0.10 -5.49 8.57 22.13 0.19 -5.30 16 29 C -0.18 -10.54 8.65 22.48 0.19 -10.34 16 30 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 31 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 32 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 33 H 0.41 12.47 8.83 -92.71 -0.82 11.65 16 34 H 0.41 10.25 7.76 -92.70 -0.72 9.53 16 35 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.39 3.85 9.12 -74.05 -0.68 3.17 16 38 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.43 7.73 -2.39 -0.02 1.41 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.87 8.06 -2.39 -0.02 0.85 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.09 5.03 6.39 -2.91 -0.02 5.01 16 47 H 0.10 5.90 6.16 -2.91 -0.02 5.88 16 Total: -1.00 -76.13 383.31 -0.79 -76.92 By element: Atomic # 1 Polarization: 48.80 SS G_CDS: -1.20 Total: 47.60 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 4.91 Total: -18.45 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.23 Total: -94.85 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -3.30 Total: -53.33 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -76.13 -0.79 -76.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887214010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.752 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.01 seconds