Wall clock time and date at job start Tue Mar 31 2020 23:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86802 * 119.99687 * 2 1 4 4 H 1.48502 * 109.46615 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47068 * 299.99492 * 3 2 1 6 6 H 1.48501 * 109.47305 * 60.00145 * 3 2 1 7 7 C 1.39888 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99460 * 175.55741 * 7 2 1 9 9 C 1.41151 * 120.00648 * 355.56010 * 7 2 1 10 10 C 1.40865 * 120.16622 * 214.78300 * 9 7 2 11 11 C 1.36378 * 119.83089 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16544 * 359.97438 * 11 10 9 13 13 N 1.39244 * 119.83199 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00176 * 35.29386 * 13 12 11 15 15 O 1.21578 * 119.99735 * 355.70845 * 14 13 12 16 16 N 1.34778 * 119.99872 * 175.71175 * 14 13 12 17 17 C 1.46496 * 119.99606 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47536 * 325.00302 * 17 16 14 19 19 C 1.53008 * 109.47006 * 85.00294 * 17 16 14 20 20 O 1.42896 * 109.46847 * 64.99888 * 19 17 16 21 21 C 1.53002 * 109.47298 * 204.99785 * 17 16 14 22 22 C 1.53003 * 109.46932 * 65.00235 * 21 17 16 23 23 H 1.08998 * 110.27306 * 55.63496 * 22 21 17 24 24 C 1.54937 * 110.31258 * 177.83489 * 22 21 17 25 25 C 1.55309 * 100.94426 * 155.36045 * 24 22 21 26 26 C 1.54383 * 102.24958 * 325.86503 * 25 24 22 27 27 O 1.43236 * 107.58781 * 21.36007 * 26 25 24 28 28 C 1.39484 * 120.33624 * 0.29434 * 12 11 10 29 29 C 1.36379 * 120.16476 * 359.44985 * 28 12 11 30 30 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.08618 * 0.04101 * 10 9 7 32 32 H 1.07997 * 119.91904 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99620 * 215.29443 * 13 12 11 34 34 H 0.96994 * 119.99778 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.46687 * 184.99946 * 19 17 16 36 36 H 1.09002 * 109.47056 * 304.99555 * 19 17 16 37 37 H 0.96709 * 113.99484 * 180.02562 * 20 19 17 38 38 H 1.08993 * 109.47324 * 185.00022 * 21 17 16 39 39 H 1.09000 * 109.47181 * 305.00460 * 21 17 16 40 40 H 1.08997 * 111.12850 * 273.28114 * 24 22 21 41 41 H 1.09009 * 111.12212 * 37.44275 * 24 22 21 42 42 H 1.09008 * 110.84866 * 207.68085 * 25 24 22 43 43 H 1.08993 * 111.02345 * 84.13416 * 25 24 22 44 44 H 1.09001 * 109.83505 * 261.84079 * 26 25 24 45 45 H 1.09007 * 109.82786 * 140.86722 * 26 25 24 46 46 H 1.07991 * 119.91740 * 179.70277 * 28 12 11 47 47 H 1.07992 * 120.08621 * 180.25354 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0719 9 6 1.3057 -2.4321 0.0957 10 6 1.8650 -3.5178 0.7976 11 6 1.1805 -4.6942 0.8848 12 6 -0.0705 -4.8236 0.2817 13 7 -0.7635 -6.0276 0.3755 14 6 -0.6814 -6.7666 1.4996 15 8 0.0582 -6.4220 2.4009 16 7 -1.4192 -7.8875 1.6245 17 6 -1.3296 -8.6910 2.8462 18 1 -0.3080 -8.6630 3.2255 19 6 -2.2810 -8.1229 3.9012 20 8 -3.6301 -8.2664 3.4525 21 6 -1.7185 -10.1377 2.5349 22 6 -0.6944 -10.7457 1.5745 23 1 0.3095 -10.6629 1.9909 24 6 -1.0396 -12.2288 1.2886 25 6 -0.3593 -12.4288 -0.0932 26 6 -0.5405 -11.0439 -0.7510 27 8 -0.7596 -10.0923 0.2970 28 6 -0.6283 -3.7548 -0.4198 29 6 0.0420 -2.5706 -0.5112 30 1 -0.4850 0.8401 -0.0004 31 1 2.8333 -3.4189 1.2657 32 1 1.6078 -5.5274 1.4229 33 1 -1.3053 -6.3345 -0.3682 34 1 -2.0095 -8.1622 0.9056 35 1 -2.1501 -8.6647 4.8380 36 1 -2.0606 -7.0670 4.0584 37 1 -4.2892 -7.9262 4.0731 38 1 -1.7379 -10.7155 3.4589 39 1 -2.7057 -10.1572 2.0733 40 1 -0.6025 -12.8860 2.0403 41 1 -2.1176 -12.3752 1.2205 42 1 -0.8695 -13.2013 -0.6687 43 1 0.6978 -12.6680 0.0223 44 1 -1.4008 -11.0619 -1.4200 45 1 0.3578 -10.7791 -1.3089 46 1 -1.5952 -3.8639 -0.8882 47 1 -0.3929 -1.7426 -1.0511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887214011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:14 Heat of formation + Delta-G solvation = -105.417044 kcal Electronic energy + Delta-G solvation = -28876.383634 eV Core-core repulsion = 24830.784585 eV Total energy + Delta-G solvation = -4045.599049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.85 seconds Orbital eigenvalues (eV) -40.12615 -39.41896 -37.74398 -36.85113 -34.81877 -34.12042 -32.86335 -32.44171 -31.51017 -29.48780 -29.13270 -28.25078 -25.74332 -24.77523 -22.44145 -21.76316 -21.45143 -20.93145 -20.42077 -19.86473 -17.93851 -17.35788 -17.14724 -17.08529 -16.43087 -16.11593 -15.34129 -15.08733 -14.99316 -14.81430 -14.21849 -13.89940 -13.78076 -13.69984 -13.40542 -13.25815 -12.79332 -12.65222 -12.45013 -12.16111 -11.99752 -11.95613 -11.62721 -11.56096 -11.36205 -11.23817 -11.10144 -11.07103 -10.90231 -10.77486 -10.62825 -10.07223 -9.92140 -9.65304 -9.39276 -9.32054 -9.11289 -8.73940 -8.59962 -7.41131 -6.68784 -6.50636 -4.22331 2.78333 3.15165 3.16674 3.20703 3.22163 3.31832 3.60925 3.88549 4.06517 4.19233 4.26991 4.30973 4.59914 4.74844 4.82025 4.87053 4.92569 4.95606 5.15215 5.24066 5.31564 5.36511 5.41767 5.48730 5.57427 5.62343 5.68497 5.77122 5.80921 5.82075 6.08006 6.32478 6.58681 6.87853 6.89015 6.91975 7.04888 7.18220 7.30592 7.41927 7.52738 7.60637 7.78060 8.02469 8.12450 8.23173 8.43585 8.70669 8.76061 9.04720 9.07401 9.31732 10.40664 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.002430 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.418864 B =11520.692660 C =12231.780135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.069 3.931 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.462 4.462 8 H 0.074 0.926 9 C 0.095 3.905 10 C -0.203 4.203 11 C -0.088 4.088 12 C 0.032 3.968 13 N -0.668 5.668 14 C 0.699 3.301 15 O -0.590 6.590 16 N -0.725 5.725 17 C 0.175 3.825 18 H 0.096 0.904 19 C 0.060 3.940 20 O -0.569 6.569 21 C -0.121 4.121 22 C 0.081 3.919 23 H 0.070 0.930 24 C -0.152 4.152 25 C -0.156 4.156 26 C 0.049 3.951 27 O -0.368 6.368 28 C -0.126 4.126 29 C -0.140 4.140 30 H 0.275 0.725 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.391 0.609 34 H 0.398 0.602 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.375 0.625 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 -22.820 2.543 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.093 3.907 10 C -0.223 4.223 11 C -0.108 4.108 12 C -0.061 4.061 13 N -0.314 5.314 14 C 0.400 3.600 15 O -0.468 6.468 16 N -0.381 5.381 17 C 0.068 3.932 18 H 0.114 0.886 19 C -0.019 4.019 20 O -0.374 6.374 21 C -0.159 4.159 22 C 0.024 3.976 23 H 0.088 0.912 24 C -0.189 4.189 25 C -0.194 4.194 26 C -0.027 4.027 27 O -0.287 6.287 28 C -0.147 4.147 29 C -0.160 4.160 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.224 0.776 34 H 0.233 0.767 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.222 0.778 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.087 -22.401 2.834 23.386 hybrid contribution -0.493 0.516 -0.040 0.715 sum -6.580 -21.886 2.794 23.023 Atomic orbital electron populations 1.69787 1.07208 1.28331 1.39032 1.25851 0.94917 1.01020 0.92750 0.86180 0.80585 0.81088 0.78267 1.18675 1.20112 1.20107 1.19489 0.94634 0.90232 1.45010 0.90742 1.17703 0.92372 0.92034 0.88616 1.20805 1.01106 0.94999 1.05428 1.20432 0.92800 0.97899 0.99697 1.17103 0.93568 0.85076 1.10362 1.42089 1.51651 1.22034 1.15580 1.15997 0.80969 0.80158 0.82865 1.90869 1.42898 1.71874 1.41184 1.44885 1.47679 1.25668 1.19883 1.20706 0.98743 0.89057 0.84688 0.88579 1.22747 0.82369 1.00676 0.96139 1.86448 1.15975 1.85587 1.49410 1.21967 0.99807 0.94837 0.99259 1.23011 0.98721 0.90426 0.85460 0.91209 1.23308 1.01693 0.96742 0.97183 1.23108 1.01685 0.98070 0.96544 1.23101 1.01010 0.87717 0.90920 1.88492 1.93276 1.33080 1.13882 1.20305 0.98405 0.93113 1.02862 1.21165 0.97290 0.95435 1.02081 0.91397 0.88773 0.87334 0.77570 0.76737 0.93320 0.92579 0.77846 0.89486 0.89724 0.90074 0.90243 0.90260 0.90655 0.91489 0.91562 0.89238 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.95 10.60 55.54 0.59 -21.36 16 2 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 3 Si 0.91 19.65 29.56 -169.99 -5.03 14.63 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.46 -12.77 9.02 -37.86 -0.34 -13.11 16 8 H 0.07 1.98 7.85 -52.48 -0.41 1.57 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 10 C -0.20 -5.38 9.74 -39.26 -0.38 -5.76 16 11 C -0.09 -2.23 8.61 -39.79 -0.34 -2.57 16 12 C 0.03 0.75 6.31 -83.56 -0.53 0.22 16 13 N -0.67 -12.90 5.31 -14.10 -0.07 -12.97 16 14 C 0.70 13.38 8.36 -86.92 -0.73 12.65 16 15 O -0.59 -13.52 13.42 5.30 0.07 -13.45 16 16 N -0.73 -10.43 3.89 -58.67 -0.23 -10.65 16 17 C 0.17 2.12 2.37 -67.93 -0.16 1.95 16 18 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 19 C 0.06 0.68 6.85 37.16 0.25 0.93 16 20 O -0.57 -5.98 12.83 -35.23 -0.45 -6.43 16 21 C -0.12 -1.08 4.30 -26.73 -0.11 -1.19 16 22 C 0.08 0.74 3.43 -25.71 -0.09 0.65 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 24 C -0.15 -1.01 6.57 -24.48 -0.16 -1.17 16 25 C -0.16 -1.03 7.02 -24.78 -0.17 -1.21 16 26 C 0.05 0.43 7.79 37.88 0.30 0.72 16 27 O -0.37 -4.11 8.99 -35.23 -0.32 -4.43 16 28 C -0.13 -3.03 9.90 -39.79 -0.39 -3.42 16 29 C -0.14 -3.74 8.62 -39.25 -0.34 -4.07 16 30 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 31 H 0.09 2.37 8.06 -52.49 -0.42 1.94 16 32 H 0.11 2.74 6.22 -52.49 -0.33 2.41 16 33 H 0.39 6.25 8.83 -40.82 -0.36 5.89 16 34 H 0.40 5.21 7.76 -40.82 -0.32 4.89 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.38 2.50 9.12 45.56 0.42 2.91 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.81 7.73 -51.93 -0.40 0.41 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.50 8.06 -51.92 -0.42 0.08 16 42 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 47 H 0.13 3.60 6.13 -52.49 -0.32 3.27 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -33.29 382.72 -9.88 -43.17 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -6.32 Total: 17.33 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -3.89 Total: -11.60 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.29 Total: -44.99 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.70 Total: -24.30 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.29 -9.88 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887214011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.248 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.85 seconds