Wall clock time and date at job start Tue Mar 31 2020 23:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86802 * 119.99687 * 2 1 4 4 H 1.48502 * 109.46615 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47068 * 299.99492 * 3 2 1 6 6 H 1.48501 * 109.47305 * 60.00145 * 3 2 1 7 7 C 1.39888 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99460 * 175.55741 * 7 2 1 9 9 C 1.41151 * 120.00648 * 355.56010 * 7 2 1 10 10 C 1.40865 * 120.16622 * 214.78300 * 9 7 2 11 11 C 1.36378 * 119.83089 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16544 * 359.97438 * 11 10 9 13 13 N 1.39244 * 119.83199 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00176 * 35.29386 * 13 12 11 15 15 O 1.21578 * 119.99735 * 355.70845 * 14 13 12 16 16 N 1.34778 * 119.99872 * 175.71175 * 14 13 12 17 17 C 1.46496 * 119.99606 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47536 * 325.00302 * 17 16 14 19 19 C 1.53008 * 109.47006 * 85.00294 * 17 16 14 20 20 O 1.42896 * 109.46847 * 64.99888 * 19 17 16 21 21 C 1.53002 * 109.47298 * 204.99785 * 17 16 14 22 22 C 1.53003 * 109.46932 * 65.00235 * 21 17 16 23 23 H 1.08998 * 110.27306 * 55.63496 * 22 21 17 24 24 C 1.54937 * 110.31258 * 177.83489 * 22 21 17 25 25 C 1.55309 * 100.94426 * 155.36045 * 24 22 21 26 26 C 1.54383 * 102.24958 * 325.86503 * 25 24 22 27 27 O 1.43236 * 107.58781 * 21.36007 * 26 25 24 28 28 C 1.39484 * 120.33624 * 0.29434 * 12 11 10 29 29 C 1.36379 * 120.16476 * 359.44985 * 28 12 11 30 30 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.08618 * 0.04101 * 10 9 7 32 32 H 1.07997 * 119.91904 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99620 * 215.29443 * 13 12 11 34 34 H 0.96994 * 119.99778 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.46687 * 184.99946 * 19 17 16 36 36 H 1.09002 * 109.47056 * 304.99555 * 19 17 16 37 37 H 0.96709 * 113.99484 * 180.02562 * 20 19 17 38 38 H 1.08993 * 109.47324 * 185.00022 * 21 17 16 39 39 H 1.09000 * 109.47181 * 305.00460 * 21 17 16 40 40 H 1.08997 * 111.12850 * 273.28114 * 24 22 21 41 41 H 1.09009 * 111.12212 * 37.44275 * 24 22 21 42 42 H 1.09008 * 110.84866 * 207.68085 * 25 24 22 43 43 H 1.08993 * 111.02345 * 84.13416 * 25 24 22 44 44 H 1.09001 * 109.83505 * 261.84079 * 26 25 24 45 45 H 1.09007 * 109.82786 * 140.86722 * 26 25 24 46 46 H 1.07991 * 119.91740 * 179.70277 * 28 12 11 47 47 H 1.07992 * 120.08621 * 180.25354 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0719 9 6 1.3057 -2.4321 0.0957 10 6 1.8650 -3.5178 0.7976 11 6 1.1805 -4.6942 0.8848 12 6 -0.0705 -4.8236 0.2817 13 7 -0.7635 -6.0276 0.3755 14 6 -0.6814 -6.7666 1.4996 15 8 0.0582 -6.4220 2.4009 16 7 -1.4192 -7.8875 1.6245 17 6 -1.3296 -8.6910 2.8462 18 1 -0.3080 -8.6630 3.2255 19 6 -2.2810 -8.1229 3.9012 20 8 -3.6301 -8.2664 3.4525 21 6 -1.7185 -10.1377 2.5349 22 6 -0.6944 -10.7457 1.5745 23 1 0.3095 -10.6629 1.9909 24 6 -1.0396 -12.2288 1.2886 25 6 -0.3593 -12.4288 -0.0932 26 6 -0.5405 -11.0439 -0.7510 27 8 -0.7596 -10.0923 0.2970 28 6 -0.6283 -3.7548 -0.4198 29 6 0.0420 -2.5706 -0.5112 30 1 -0.4850 0.8401 -0.0004 31 1 2.8333 -3.4189 1.2657 32 1 1.6078 -5.5274 1.4229 33 1 -1.3053 -6.3345 -0.3682 34 1 -2.0095 -8.1622 0.9056 35 1 -2.1501 -8.6647 4.8380 36 1 -2.0606 -7.0670 4.0584 37 1 -4.2892 -7.9262 4.0731 38 1 -1.7379 -10.7155 3.4589 39 1 -2.7057 -10.1572 2.0733 40 1 -0.6025 -12.8860 2.0403 41 1 -2.1176 -12.3752 1.2205 42 1 -0.8695 -13.2013 -0.6687 43 1 0.6978 -12.6680 0.0223 44 1 -1.4008 -11.0619 -1.4200 45 1 0.3578 -10.7791 -1.3089 46 1 -1.5952 -3.8639 -0.8882 47 1 -0.3929 -1.7426 -1.0511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887214011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:55 Heat of formation + Delta-G solvation = -129.104995 kcal Electronic energy + Delta-G solvation = -28877.410821 eV Core-core repulsion = 24830.784585 eV Total energy + Delta-G solvation = -4046.626236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 18.12 seconds Orbital eigenvalues (eV) -41.46071 -40.38811 -39.30711 -38.11548 -36.17627 -35.66182 -34.67764 -33.20271 -32.50643 -31.44164 -30.65769 -29.59097 -26.68974 -26.47153 -23.75637 -23.02751 -22.54685 -22.20891 -21.62226 -21.44461 -19.42289 -19.10877 -18.33109 -18.13077 -17.69161 -17.03695 -16.83131 -16.50887 -16.17404 -15.84818 -15.68952 -15.46810 -15.01349 -14.80882 -14.58525 -14.47768 -14.11012 -13.97054 -13.91853 -13.57224 -13.28634 -13.16174 -12.99246 -12.81382 -12.73195 -12.56667 -12.46153 -12.34631 -12.02692 -11.76940 -11.64397 -11.58929 -11.36649 -11.20226 -11.01254 -10.85993 -10.58894 -10.38587 -9.89004 -9.43468 -8.64253 -8.47016 -6.29344 0.87810 1.17101 1.40102 1.48147 1.55802 1.88796 2.25559 2.31670 2.84241 2.93688 3.41342 3.48324 3.57783 3.65795 3.71805 4.04944 4.08347 4.17174 4.26013 4.41360 4.44395 4.46767 4.55259 4.56374 4.62346 4.82227 4.87890 4.90166 4.92201 4.95548 4.98018 5.06739 5.16880 5.18462 5.22367 5.34104 5.37825 5.48537 5.69549 5.73845 5.87716 6.07902 6.16307 6.21191 6.34721 6.43249 6.71381 6.87772 6.99883 7.04602 7.25517 7.76611 8.45939 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.002430 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.418864 B =11520.692660 C =12231.780135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.064 3.936 10 C -0.218 4.218 11 C -0.098 4.098 12 C 0.046 3.954 13 N -0.663 5.663 14 C 0.696 3.304 15 O -0.630 6.630 16 N -0.704 5.704 17 C 0.165 3.835 18 H 0.078 0.922 19 C 0.067 3.933 20 O -0.576 6.576 21 C -0.106 4.106 22 C 0.073 3.927 23 H 0.057 0.943 24 C -0.142 4.142 25 C -0.152 4.152 26 C 0.041 3.959 27 O -0.396 6.396 28 C -0.124 4.124 29 C -0.156 4.156 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.407 0.593 35 H 0.080 0.920 36 H 0.020 0.980 37 H 0.393 0.607 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.121 0.879 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -24.505 2.729 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.238 4.238 11 C -0.118 4.118 12 C -0.048 4.048 13 N -0.310 5.310 14 C 0.396 3.604 15 O -0.511 6.511 16 N -0.359 5.359 17 C 0.059 3.941 18 H 0.096 0.904 19 C -0.012 4.012 20 O -0.384 6.384 21 C -0.143 4.143 22 C 0.016 3.984 23 H 0.075 0.925 24 C -0.180 4.180 25 C -0.189 4.189 26 C -0.036 4.036 27 O -0.316 6.316 28 C -0.144 4.144 29 C -0.176 4.176 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.246 0.754 34 H 0.244 0.756 35 H 0.098 0.902 36 H 0.038 0.962 37 H 0.242 0.758 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.139 0.861 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.573 -24.159 3.010 25.497 hybrid contribution -0.137 0.882 -0.070 0.895 sum -7.711 -23.278 2.940 24.697 Atomic orbital electron populations 1.69848 1.08569 1.29772 1.39055 1.26746 0.95829 1.04309 0.91660 0.85048 0.79021 0.76117 0.78764 1.18438 1.18707 1.19450 1.19712 0.94740 0.91308 1.47123 0.91043 1.18017 0.93399 0.92726 0.89667 1.20922 1.01517 0.95451 1.05883 1.20507 0.93694 0.97446 1.00183 1.17130 0.92927 0.86374 1.08378 1.41915 1.51545 1.20879 1.16648 1.16179 0.81014 0.80984 0.82173 1.90844 1.44728 1.73080 1.42480 1.44798 1.46189 1.23970 1.20928 1.20978 0.98388 0.90853 0.83847 0.90362 1.22570 0.82753 0.98814 0.97045 1.86398 1.15815 1.85656 1.50489 1.21908 0.99428 0.92523 1.00490 1.23117 0.98224 0.92243 0.84825 0.92480 1.23275 1.02339 0.94889 0.97452 1.23102 1.02054 0.97145 0.96622 1.23232 1.00957 0.88647 0.90721 1.88448 1.93336 1.34757 1.15023 1.20523 0.99310 0.92129 1.02451 1.21152 0.97490 0.96250 1.02736 0.90582 0.88660 0.87627 0.75397 0.75633 0.90221 0.96166 0.75775 0.86697 0.89668 0.88407 0.89359 0.88504 0.90634 0.90660 0.92568 0.86083 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.09 10.60 21.82 0.23 -45.86 16 2 C 0.03 1.37 5.42 85.23 0.46 1.83 16 3 Si 0.99 40.51 29.56 68.60 2.03 42.54 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.50 -28.40 9.02 23.39 0.21 -28.19 16 8 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 9 C 0.06 3.71 5.55 -21.28 -0.12 3.59 16 10 C -0.22 -11.97 9.74 22.48 0.22 -11.75 16 11 C -0.10 -5.08 8.61 22.14 0.19 -4.89 16 12 C 0.05 2.18 6.31 38.57 0.24 2.43 16 13 N -0.66 -25.17 5.31 -316.78 -1.68 -26.85 16 14 C 0.70 26.56 8.36 179.05 1.50 28.05 16 15 O -0.63 -29.44 13.42 -3.96 -0.05 -29.49 16 16 N -0.70 -19.66 3.89 -457.81 -1.78 -21.44 16 17 C 0.16 3.81 2.37 45.00 0.11 3.92 16 18 H 0.08 2.12 7.58 -2.39 -0.02 2.10 16 19 C 0.07 1.43 6.85 71.98 0.49 1.92 16 20 O -0.58 -10.75 12.83 -148.98 -1.91 -12.66 16 21 C -0.11 -1.63 4.30 30.60 0.13 -1.50 16 22 C 0.07 1.21 3.43 31.26 0.11 1.32 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 C -0.14 -1.47 6.57 32.05 0.21 -1.26 16 25 C -0.15 -1.66 7.02 31.86 0.22 -1.44 16 26 C 0.04 0.66 7.79 72.45 0.56 1.23 16 27 O -0.40 -8.40 8.99 -148.98 -1.34 -9.73 16 28 C -0.12 -5.92 9.90 22.14 0.22 -5.70 16 29 C -0.16 -8.55 8.62 22.48 0.19 -8.36 16 30 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 31 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.11 5.51 6.22 -2.91 -0.02 5.49 16 33 H 0.41 12.47 8.83 -92.71 -0.82 11.65 16 34 H 0.41 10.05 7.76 -92.71 -0.72 9.33 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.39 4.28 9.12 -74.05 -0.68 3.61 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.37 7.73 -2.39 -0.02 1.35 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.79 8.06 -2.38 -0.02 0.77 16 42 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.12 4.94 8.06 -2.92 -0.02 4.92 16 47 H 0.12 6.74 6.13 -2.91 -0.02 6.72 16 Total: -1.00 -74.41 382.72 -0.75 -75.16 By element: Atomic # 1 Polarization: 48.33 SS G_CDS: -1.20 Total: 47.13 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.95 Total: -18.80 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -3.23 Total: -94.15 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -3.30 Total: -51.88 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -74.41 -0.75 -75.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887214011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.947 kcal (2) G-P(sol) polarization free energy of solvation -74.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.12 seconds