Wall clock time and date at job start Tue Mar 31 2020 23:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86802 * 120.00270 * 2 1 4 4 H 1.48505 * 109.47217 * 270.00415 * 3 2 1 5 5 H 1.48508 * 109.46885 * 30.00201 * 3 2 1 6 6 H 1.48501 * 109.47131 * 150.00051 * 3 2 1 7 7 C 1.39895 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99999 * 196.81688 * 7 2 1 9 9 C 1.41161 * 120.00003 * 16.81743 * 7 2 1 10 10 C 1.40861 * 120.16217 * 205.34478 * 9 7 2 11 11 C 1.36374 * 119.83037 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16462 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.83396 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00267 * 145.59861 * 13 12 11 15 15 O 1.21583 * 119.99676 * 354.85897 * 14 13 12 16 16 N 1.34771 * 119.99943 * 174.85356 * 14 13 12 17 17 C 1.46506 * 119.99944 * 180.02562 * 16 14 13 18 18 H 1.09008 * 109.47032 * 35.00116 * 17 16 14 19 19 C 1.52999 * 109.47044 * 275.00593 * 17 16 14 20 20 O 1.42903 * 109.46967 * 294.99493 * 19 17 16 21 21 C 1.52991 * 109.47162 * 155.00290 * 17 16 14 22 22 C 1.53001 * 109.47351 * 294.99969 * 21 17 16 23 23 H 1.09005 * 110.32937 * 52.75252 * 22 21 17 24 24 C 1.54476 * 110.37574 * 175.00123 * 22 21 17 25 25 C 1.54500 * 104.06450 * 142.81213 * 24 22 21 26 26 C 1.54479 * 104.06622 * 0.02562 * 25 24 22 27 27 O 1.44424 * 104.89524 * 335.96630 * 26 25 24 28 28 C 1.39482 * 120.33475 * 0.27434 * 12 11 10 29 29 C 1.36373 * 120.16609 * 359.44115 * 28 12 11 30 30 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.08749 * 0.05024 * 10 9 7 32 32 H 1.07996 * 119.92146 * 179.97438 * 11 10 9 33 33 H 0.96992 * 119.99866 * 325.60025 * 13 12 11 34 34 H 0.96999 * 120.00534 * 0.02562 * 16 14 13 35 35 H 1.08992 * 109.47450 * 55.00115 * 19 17 16 36 36 H 1.09003 * 109.46779 * 174.99767 * 19 17 16 37 37 H 0.96704 * 113.99661 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.47209 * 175.00490 * 21 17 16 39 39 H 1.08999 * 109.47478 * 55.00221 * 21 17 16 40 40 H 1.09001 * 110.51112 * 24.16353 * 24 22 21 41 41 H 1.09006 * 110.51026 * 261.45707 * 24 22 21 42 42 H 1.09001 * 110.51195 * 241.35160 * 25 24 22 43 43 H 1.09008 * 110.63034 * 118.70380 * 25 24 22 44 44 H 1.09000 * 110.37469 * 94.85210 * 26 25 24 45 45 H 1.09001 * 110.37309 * 217.08339 * 26 25 24 46 46 H 1.08003 * 119.91711 * 179.72771 * 28 12 11 47 47 H 1.08001 * 120.08693 * 180.27549 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0536 -1.2317 0.2700 9 6 1.3477 -2.4077 -0.3548 10 6 1.8187 -3.6453 0.1256 11 6 1.1757 -4.7968 -0.2213 12 6 0.0546 -4.7512 -1.0500 13 7 -0.5970 -5.9311 -1.3994 14 6 -1.9351 -5.9399 -1.5602 15 8 -2.5839 -4.9426 -1.3097 16 7 -2.5538 -7.0540 -1.9987 17 6 -4.0083 -7.0633 -2.1740 18 1 -4.3394 -6.0826 -2.5159 19 6 -4.6807 -7.3917 -0.8394 20 8 -4.3386 -8.7230 -0.4486 21 6 -4.3902 -8.1209 -3.2114 22 6 -3.8207 -7.7263 -4.5755 23 1 -2.7516 -7.5284 -4.4967 24 6 -4.0864 -8.8404 -5.6120 25 6 -4.3892 -8.0734 -6.9185 26 6 -4.2701 -6.5864 -6.5171 27 8 -4.5118 -6.5657 -5.0934 28 6 -0.4139 -3.5301 -1.5346 29 6 0.2152 -2.3698 -1.1917 30 1 -0.4850 0.8401 0.0004 31 1 2.6866 -3.6822 0.7674 32 1 1.5358 -5.7465 0.1458 33 1 -0.0878 -6.7467 -1.5271 34 1 -2.0362 -7.8497 -2.1983 35 1 -4.3393 -6.6904 -0.0782 36 1 -5.7623 -7.3116 -0.9482 37 1 -4.7307 -8.9994 0.3910 38 1 -5.4760 -8.1899 -3.2773 39 1 -3.9823 -9.0866 -2.9130 40 1 -4.9453 -9.4420 -5.3144 41 1 -3.2032 -9.4677 -5.7334 42 1 -5.3979 -8.2957 -7.2669 43 1 -3.6574 -8.3208 -7.6876 44 1 -3.2702 -6.2127 -6.7377 45 1 -5.0202 -5.9914 -7.0380 46 1 -1.2799 -3.5030 -2.1794 47 1 -0.1514 -1.4246 -1.5641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887214012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:24 Heat of formation + Delta-G solvation = -107.974635 kcal Electronic energy + Delta-G solvation = -28725.453957 eV Core-core repulsion = 24679.744003 eV Total energy + Delta-G solvation = -4045.709955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.14066 -39.42018 -37.78237 -36.88512 -34.89183 -34.22415 -32.92324 -32.34931 -31.54948 -29.42383 -29.21713 -28.35185 -25.73700 -24.82966 -22.58700 -21.83747 -21.19356 -21.12725 -20.43968 -19.90722 -18.07854 -17.34153 -17.23057 -16.70867 -16.49633 -15.87844 -15.75025 -15.34747 -15.04378 -14.71059 -14.27901 -13.95969 -13.87683 -13.75547 -13.61219 -12.99942 -12.86387 -12.63446 -12.34671 -12.10672 -11.97838 -11.92703 -11.77340 -11.64135 -11.42384 -11.24694 -11.07965 -10.90075 -10.87208 -10.80210 -10.44878 -10.08330 -9.91789 -9.87535 -9.78593 -9.44116 -9.17981 -8.75525 -8.61643 -7.43508 -6.89637 -6.64674 -4.20886 2.75735 3.10255 3.12667 3.15658 3.16358 3.24860 3.71153 3.82506 3.99619 4.25096 4.27708 4.37507 4.65074 4.73431 4.73623 4.78009 4.97873 4.99901 5.16038 5.23897 5.34072 5.41020 5.45917 5.52512 5.57377 5.64173 5.74391 5.78275 5.82602 5.89716 6.07111 6.22921 6.46329 6.65355 6.77741 6.91967 6.94487 7.13348 7.19852 7.38347 7.45957 7.50705 7.70208 7.95892 8.10220 8.14046 8.35228 8.61564 8.71747 8.96996 9.02253 9.24947 10.28047 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.002547 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.307832 B =10988.975041 C =11814.221182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.215 4.215 11 C -0.109 4.109 12 C 0.018 3.982 13 N -0.669 5.669 14 C 0.694 3.306 15 O -0.576 6.576 16 N -0.741 5.741 17 C 0.172 3.828 18 H 0.107 0.893 19 C 0.060 3.940 20 O -0.571 6.571 21 C -0.113 4.113 22 C 0.072 3.928 23 H 0.072 0.928 24 C -0.151 4.151 25 C -0.156 4.156 26 C 0.044 3.956 27 O -0.367 6.367 28 C -0.086 4.086 29 C -0.153 4.153 30 H 0.280 0.720 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.389 0.611 34 H 0.391 0.609 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.376 0.624 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 -17.859 -9.486 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.235 4.235 11 C -0.129 4.129 12 C -0.075 4.075 13 N -0.315 5.315 14 C 0.395 3.605 15 O -0.452 6.452 16 N -0.397 5.397 17 C 0.066 3.934 18 H 0.125 0.875 19 C -0.019 4.019 20 O -0.376 6.376 21 C -0.151 4.151 22 C 0.015 3.985 23 H 0.090 0.910 24 C -0.188 4.188 25 C -0.193 4.193 26 C -0.034 4.034 27 O -0.286 6.286 28 C -0.106 4.106 29 C -0.173 4.173 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.222 0.778 34 H 0.224 0.776 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.222 0.778 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.120 0.880 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.931 -16.573 -9.699 21.619 hybrid contribution 0.562 -0.187 0.361 0.694 sum -9.369 -16.760 -9.338 21.351 Atomic orbital electron populations 1.69869 1.07482 1.29129 1.35143 1.25920 0.94723 1.01251 0.92496 0.86325 0.80412 0.80775 0.79231 1.19343 1.20391 1.18704 1.19519 0.97695 0.91199 1.40731 0.90496 1.17650 0.91324 0.92050 0.88885 1.20529 1.03798 0.92527 1.06637 1.20019 0.97220 0.97144 0.98523 1.16975 0.98747 0.84477 1.07292 1.42111 1.04881 1.11747 1.72742 1.16030 0.82171 0.83416 0.78869 1.90943 1.64596 1.33080 1.56599 1.45079 1.07350 1.14141 1.73123 1.20806 0.79586 1.00522 0.92482 0.87547 1.22741 0.97875 0.83746 0.97505 1.86420 1.76484 1.31060 1.43676 1.21836 1.02245 0.99160 0.91841 1.23108 0.96806 0.84999 0.93619 0.91015 1.22986 1.02560 0.98469 0.94829 1.22937 1.02609 0.95782 0.98007 1.23376 1.01399 0.96069 0.82510 1.89231 1.73519 1.45978 1.19862 1.20445 0.98862 0.91634 0.99700 1.20981 0.98906 0.96652 1.00753 0.90891 0.88732 0.89352 0.77825 0.77570 0.92572 0.93098 0.77808 0.89797 0.89280 0.90559 0.90568 0.90808 0.90673 0.92276 0.89203 0.88046 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.44 10.95 55.55 0.61 -20.83 16 2 C 0.07 1.91 5.15 -17.34 -0.09 1.83 16 3 Si 0.91 19.19 29.59 -169.99 -5.03 14.16 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.54 9.04 -37.85 -0.34 -12.88 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.10 2.85 5.57 -106.80 -0.59 2.25 16 10 C -0.21 -5.35 9.74 -39.26 -0.38 -5.74 16 11 C -0.11 -2.46 9.90 -39.79 -0.39 -2.85 16 12 C 0.02 0.41 6.27 -83.57 -0.52 -0.11 16 13 N -0.67 -12.39 5.31 -14.10 -0.07 -12.46 16 14 C 0.69 13.08 8.25 -86.92 -0.72 12.37 16 15 O -0.58 -13.58 13.74 5.29 0.07 -13.51 16 16 N -0.74 -10.13 4.40 -58.68 -0.26 -10.39 16 17 C 0.17 2.18 2.34 -67.93 -0.16 2.02 16 18 H 0.11 1.66 7.33 -51.92 -0.38 1.28 16 19 C 0.06 0.71 6.85 37.16 0.25 0.96 16 20 O -0.57 -5.78 12.83 -35.23 -0.45 -6.24 16 21 C -0.11 -1.09 4.10 -26.73 -0.11 -1.20 16 22 C 0.07 0.73 3.19 -25.96 -0.08 0.65 16 23 H 0.07 0.78 7.62 -51.93 -0.40 0.39 16 24 C -0.15 -1.14 6.63 -25.17 -0.17 -1.31 16 25 C -0.16 -1.14 7.09 -25.17 -0.18 -1.32 16 26 C 0.04 0.41 7.62 37.93 0.29 0.70 16 27 O -0.37 -4.61 11.07 -35.23 -0.39 -5.00 16 28 C -0.09 -2.23 8.57 -39.79 -0.34 -2.57 16 29 C -0.15 -4.22 8.63 -39.26 -0.34 -4.56 16 30 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 31 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.39 5.64 8.83 -40.82 -0.36 5.28 16 34 H 0.39 4.28 8.62 -40.82 -0.35 3.93 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.38 2.37 9.12 45.56 0.42 2.78 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.77 7.73 -51.93 -0.40 0.37 16 40 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 2.66 6.48 -52.48 -0.34 2.32 16 47 H 0.12 3.40 6.18 -52.49 -0.32 3.08 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -33.71 385.37 -9.92 -43.63 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -6.32 Total: 16.59 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.88 Total: -11.76 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.28 Total: -43.68 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.77 Total: -24.75 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.71 -9.92 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887214012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.345 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds