Wall clock time and date at job start Tue Mar 31 2020 23:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86802 * 120.00270 * 2 1 4 4 H 1.48505 * 109.47217 * 270.00415 * 3 2 1 5 5 H 1.48508 * 109.46885 * 30.00201 * 3 2 1 6 6 H 1.48501 * 109.47131 * 150.00051 * 3 2 1 7 7 C 1.39895 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99999 * 196.81688 * 7 2 1 9 9 C 1.41161 * 120.00003 * 16.81743 * 7 2 1 10 10 C 1.40861 * 120.16217 * 205.34478 * 9 7 2 11 11 C 1.36374 * 119.83037 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16462 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.83396 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00267 * 145.59861 * 13 12 11 15 15 O 1.21583 * 119.99676 * 354.85897 * 14 13 12 16 16 N 1.34771 * 119.99943 * 174.85356 * 14 13 12 17 17 C 1.46506 * 119.99944 * 180.02562 * 16 14 13 18 18 H 1.09008 * 109.47032 * 35.00116 * 17 16 14 19 19 C 1.52999 * 109.47044 * 275.00593 * 17 16 14 20 20 O 1.42903 * 109.46967 * 294.99493 * 19 17 16 21 21 C 1.52991 * 109.47162 * 155.00290 * 17 16 14 22 22 C 1.53001 * 109.47351 * 294.99969 * 21 17 16 23 23 H 1.09005 * 110.32937 * 52.75252 * 22 21 17 24 24 C 1.54476 * 110.37574 * 175.00123 * 22 21 17 25 25 C 1.54500 * 104.06450 * 142.81213 * 24 22 21 26 26 C 1.54479 * 104.06622 * 0.02562 * 25 24 22 27 27 O 1.44424 * 104.89524 * 335.96630 * 26 25 24 28 28 C 1.39482 * 120.33475 * 0.27434 * 12 11 10 29 29 C 1.36373 * 120.16609 * 359.44115 * 28 12 11 30 30 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.08749 * 0.05024 * 10 9 7 32 32 H 1.07996 * 119.92146 * 179.97438 * 11 10 9 33 33 H 0.96992 * 119.99866 * 325.60025 * 13 12 11 34 34 H 0.96999 * 120.00534 * 0.02562 * 16 14 13 35 35 H 1.08992 * 109.47450 * 55.00115 * 19 17 16 36 36 H 1.09003 * 109.46779 * 174.99767 * 19 17 16 37 37 H 0.96704 * 113.99661 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.47209 * 175.00490 * 21 17 16 39 39 H 1.08999 * 109.47478 * 55.00221 * 21 17 16 40 40 H 1.09001 * 110.51112 * 24.16353 * 24 22 21 41 41 H 1.09006 * 110.51026 * 261.45707 * 24 22 21 42 42 H 1.09001 * 110.51195 * 241.35160 * 25 24 22 43 43 H 1.09008 * 110.63034 * 118.70380 * 25 24 22 44 44 H 1.09000 * 110.37469 * 94.85210 * 26 25 24 45 45 H 1.09001 * 110.37309 * 217.08339 * 26 25 24 46 46 H 1.08003 * 119.91711 * 179.72771 * 28 12 11 47 47 H 1.08001 * 120.08693 * 180.27549 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0536 -1.2317 0.2700 9 6 1.3477 -2.4077 -0.3548 10 6 1.8187 -3.6453 0.1256 11 6 1.1757 -4.7968 -0.2213 12 6 0.0546 -4.7512 -1.0500 13 7 -0.5970 -5.9311 -1.3994 14 6 -1.9351 -5.9399 -1.5602 15 8 -2.5839 -4.9426 -1.3097 16 7 -2.5538 -7.0540 -1.9987 17 6 -4.0083 -7.0633 -2.1740 18 1 -4.3394 -6.0826 -2.5159 19 6 -4.6807 -7.3917 -0.8394 20 8 -4.3386 -8.7230 -0.4486 21 6 -4.3902 -8.1209 -3.2114 22 6 -3.8207 -7.7263 -4.5755 23 1 -2.7516 -7.5284 -4.4967 24 6 -4.0864 -8.8404 -5.6120 25 6 -4.3892 -8.0734 -6.9185 26 6 -4.2701 -6.5864 -6.5171 27 8 -4.5118 -6.5657 -5.0934 28 6 -0.4139 -3.5301 -1.5346 29 6 0.2152 -2.3698 -1.1917 30 1 -0.4850 0.8401 0.0004 31 1 2.6866 -3.6822 0.7674 32 1 1.5358 -5.7465 0.1458 33 1 -0.0878 -6.7467 -1.5271 34 1 -2.0362 -7.8497 -2.1983 35 1 -4.3393 -6.6904 -0.0782 36 1 -5.7623 -7.3116 -0.9482 37 1 -4.7307 -8.9994 0.3910 38 1 -5.4760 -8.1899 -3.2773 39 1 -3.9823 -9.0866 -2.9130 40 1 -4.9453 -9.4420 -5.3144 41 1 -3.2032 -9.4677 -5.7334 42 1 -5.3979 -8.2957 -7.2669 43 1 -3.6574 -8.3208 -7.6876 44 1 -3.2702 -6.2127 -6.7377 45 1 -5.0202 -5.9914 -7.0380 46 1 -1.2799 -3.5030 -2.1794 47 1 -0.1514 -1.4246 -1.5641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887214012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:22 Heat of formation + Delta-G solvation = -133.224047 kcal Electronic energy + Delta-G solvation = -28726.548854 eV Core-core repulsion = 24679.744003 eV Total energy + Delta-G solvation = -4046.804851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.51686 -40.40707 -39.34394 -38.15585 -36.24044 -35.78261 -34.73024 -33.14918 -32.59938 -31.38503 -30.76168 -29.63580 -26.72832 -26.50841 -23.72484 -23.19536 -22.94882 -21.88592 -21.73482 -21.44852 -19.52991 -19.19657 -18.32060 -18.17657 -17.27138 -17.16496 -16.85528 -16.59874 -16.40655 -15.87976 -15.75176 -15.63071 -15.05006 -14.86857 -14.66504 -14.53127 -14.39771 -13.94456 -13.81525 -13.62708 -13.35204 -13.10978 -12.91005 -12.79988 -12.65764 -12.59466 -12.50163 -12.30875 -12.00848 -11.72482 -11.70383 -11.66442 -11.47437 -11.26220 -11.06796 -10.90110 -10.74385 -10.50180 -10.02939 -9.43490 -8.81207 -8.57811 -6.24336 0.88417 1.15767 1.38309 1.49049 1.52986 1.79908 2.21122 2.24924 2.79963 2.98861 3.36851 3.40839 3.53873 3.71926 3.76493 4.01050 4.05455 4.10260 4.23707 4.39894 4.43433 4.44819 4.47195 4.49746 4.60111 4.71053 4.80286 4.89633 4.96622 4.97275 5.00587 5.05766 5.11825 5.16273 5.20391 5.25027 5.31928 5.46268 5.56975 5.68440 5.81234 5.94170 6.10960 6.14746 6.24545 6.38389 6.70633 6.85560 6.95098 7.04218 7.20856 7.72208 8.36709 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.002547 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.307832 B =10988.975041 C =11814.221182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.495 4.495 8 H 0.082 0.918 9 C 0.071 3.929 10 C -0.221 4.221 11 C -0.102 4.102 12 C 0.031 3.969 13 N -0.659 5.659 14 C 0.692 3.308 15 O -0.627 6.627 16 N -0.716 5.716 17 C 0.167 3.833 18 H 0.071 0.929 19 C 0.070 3.930 20 O -0.572 6.572 21 C -0.099 4.099 22 C 0.065 3.935 23 H 0.059 0.941 24 C -0.144 4.144 25 C -0.150 4.150 26 C 0.033 3.967 27 O -0.401 6.401 28 C -0.100 4.100 29 C -0.177 4.177 30 H 0.286 0.714 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.413 0.587 34 H 0.409 0.591 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.395 0.605 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -20.750 -9.726 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.069 3.931 10 C -0.241 4.241 11 C -0.122 4.122 12 C -0.063 4.063 13 N -0.307 5.307 14 C 0.393 3.607 15 O -0.507 6.507 16 N -0.372 5.372 17 C 0.061 3.939 18 H 0.089 0.911 19 C -0.009 4.009 20 O -0.380 6.380 21 C -0.136 4.136 22 C 0.007 3.993 23 H 0.077 0.923 24 C -0.182 4.182 25 C -0.187 4.187 26 C -0.044 4.044 27 O -0.321 6.321 28 C -0.121 4.121 29 C -0.197 4.197 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.244 0.756 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.447 -19.574 -9.952 23.904 hybrid contribution 0.315 0.543 0.415 0.753 sum -9.132 -19.030 -9.536 23.162 Atomic orbital electron populations 1.69960 1.09287 1.30378 1.36208 1.26875 0.95430 1.04919 0.91350 0.85149 0.79092 0.75650 0.79444 1.18796 1.19594 1.17612 1.19810 0.98121 0.92199 1.42320 0.89962 1.17993 0.91803 0.93673 0.89668 1.20824 1.04355 0.92382 1.06529 1.20370 0.96191 0.98390 0.97247 1.17016 0.98462 0.85002 1.05797 1.41866 1.05003 1.11315 1.72519 1.16231 0.82033 0.83886 0.78583 1.90923 1.65688 1.35428 1.58697 1.44861 1.08009 1.13177 1.71164 1.20895 0.78564 1.00109 0.94292 0.91127 1.22482 0.98823 0.83910 0.95687 1.86359 1.76901 1.29572 1.45132 1.21780 1.02926 0.98507 0.90419 1.23233 0.95956 0.85426 0.94648 0.92261 1.22978 1.03803 0.97666 0.93736 1.22929 1.03727 0.93721 0.98351 1.23553 1.01214 0.98163 0.81457 1.89205 1.73968 1.47433 1.21522 1.20436 0.98613 0.92758 1.00261 1.20860 1.00219 0.96331 1.02325 0.90406 0.87034 0.84845 0.74982 0.75411 0.95928 0.90941 0.75592 0.88753 0.87315 0.89363 0.88970 0.89801 0.89255 0.93030 0.88646 0.89531 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.18 10.95 21.82 0.24 -46.94 16 2 C 0.03 1.50 5.15 85.24 0.44 1.94 16 3 Si 0.99 40.04 29.59 68.60 2.03 42.07 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.49 -27.64 9.04 23.39 0.21 -27.43 16 8 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 9 C 0.07 4.04 5.57 -21.28 -0.12 3.92 16 10 C -0.22 -10.93 9.74 22.48 0.22 -10.71 16 11 C -0.10 -4.43 9.90 22.13 0.22 -4.21 16 12 C 0.03 1.44 6.27 38.56 0.24 1.68 16 13 N -0.66 -23.60 5.31 -316.78 -1.68 -25.29 16 14 C 0.69 26.12 8.25 179.06 1.48 27.59 16 15 O -0.63 -30.80 13.74 -3.98 -0.05 -30.86 16 16 N -0.72 -18.89 4.40 -457.82 -2.01 -20.91 16 17 C 0.17 4.15 2.34 44.99 0.11 4.26 16 18 H 0.07 2.32 7.33 -2.38 -0.02 2.30 16 19 C 0.07 1.57 6.85 71.98 0.49 2.07 16 20 O -0.57 -10.03 12.83 -148.98 -1.91 -11.94 16 21 C -0.10 -1.70 4.10 30.59 0.13 -1.57 16 22 C 0.06 1.22 3.19 31.10 0.10 1.32 16 23 H 0.06 1.23 7.62 -2.38 -0.02 1.22 16 24 C -0.14 -1.78 6.63 31.61 0.21 -1.57 16 25 C -0.15 -1.88 7.09 31.61 0.22 -1.65 16 26 C 0.03 0.61 7.62 72.49 0.55 1.17 16 27 O -0.40 -10.15 11.07 -148.98 -1.65 -11.80 16 28 C -0.10 -5.41 8.57 22.13 0.19 -5.22 16 29 C -0.18 -10.32 8.63 22.48 0.19 -10.13 16 30 H 0.29 14.75 8.30 -92.71 -0.77 13.98 16 31 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 32 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.41 10.80 8.83 -92.71 -0.82 9.98 16 34 H 0.41 7.95 8.62 -92.71 -0.80 7.15 16 35 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.39 3.85 9.12 -74.05 -0.68 3.18 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 1.48 7.73 -2.39 -0.02 1.47 16 40 H 0.09 0.90 7.87 -2.39 -0.02 0.88 16 41 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.09 4.85 6.48 -2.91 -0.02 4.83 16 47 H 0.09 5.85 6.18 -2.91 -0.02 5.83 16 Total: -1.00 -78.11 385.37 -1.44 -79.55 By element: Atomic # 1 Polarization: 45.96 SS G_CDS: -1.28 Total: 44.68 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.88 Total: -18.56 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.46 Total: -93.14 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -3.61 Total: -54.60 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -78.11 -1.44 -79.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887214012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.679 kcal (2) G-P(sol) polarization free energy of solvation -78.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds