Wall clock time and date at job start Wed Apr 1 2020 00:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 120.00233 * 2 1 4 4 H 1.48501 * 109.47209 * 270.00370 * 3 2 1 5 5 H 1.48501 * 109.47001 * 29.99744 * 3 2 1 6 6 H 1.48495 * 109.47360 * 149.99739 * 3 2 1 7 7 C 1.38656 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99994 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00006 * 179.97438 * 7 2 1 10 10 C 1.35756 * 117.00018 * 185.05859 * 9 7 2 11 11 C 1.38875 * 120.06813 * 354.47018 * 10 9 7 12 12 C 1.38102 * 119.92994 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07196 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93528 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47088 * 89.99847 * 14 13 12 16 16 C 1.34783 * 119.99632 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00068 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99729 * 180.02562 * 16 15 14 19 19 C 1.46495 * 119.99977 * 179.97438 * 18 16 15 20 20 C 1.53782 * 113.61634 * 254.13482 * 19 18 16 21 21 C 1.53954 * 87.01929 * 220.04605 * 20 19 18 22 22 C 1.53008 * 113.74030 * 139.94179 * 21 20 19 23 23 C 1.53001 * 109.46667 * 87.40587 * 22 21 20 24 24 O 1.42903 * 109.46623 * 179.97438 * 23 22 21 25 25 C 1.53783 * 113.61462 * 156.52562 * 19 18 16 26 26 C 1.38308 * 120.13572 * 0.25017 * 13 12 11 27 27 C 1.38103 * 120.06460 * 359.45453 * 26 13 12 28 28 H 0.96998 * 120.00240 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.03856 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96438 * 179.97438 * 12 11 10 31 31 H 1.09002 * 109.46986 * 329.99861 * 14 13 12 32 32 H 1.08998 * 109.47500 * 209.99965 * 14 13 12 33 33 H 0.96997 * 120.00196 * 0.02562 * 15 14 13 34 34 H 0.97002 * 119.99591 * 359.97438 * 18 16 15 35 35 H 1.09003 * 112.84863 * 25.33535 * 19 18 16 36 36 H 1.08992 * 113.61162 * 334.56704 * 20 19 18 37 37 H 1.09007 * 113.61161 * 105.47250 * 20 19 18 38 38 H 1.09000 * 113.54146 * 270.81168 * 21 20 19 39 39 H 1.09003 * 109.47040 * 207.40618 * 22 21 20 40 40 H 1.09001 * 109.46799 * 327.40511 * 22 21 20 41 41 H 1.08997 * 109.46756 * 299.99687 * 23 22 21 42 42 H 1.08993 * 109.47314 * 60.00223 * 23 22 21 43 43 H 0.96699 * 114.00076 * 179.97438 * 24 23 22 44 44 H 1.08998 * 113.61556 * 254.53236 * 25 19 18 45 45 H 1.09000 * 113.61013 * 25.43565 * 25 19 18 46 46 H 1.07994 * 119.96673 * 179.70552 * 26 13 12 47 47 H 1.08005 * 120.03025 * 180.27119 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4058 -0.1061 11 6 3.2234 -3.5745 -0.0922 12 6 3.8534 -4.7988 -0.1998 13 6 5.2296 -4.8617 -0.3207 14 6 5.9138 -6.1993 -0.4373 15 7 6.0174 -6.5733 -1.8500 16 6 6.5976 -7.7392 -2.1975 17 8 7.0353 -8.4802 -1.3387 18 7 6.6934 -8.0831 -3.4972 19 6 7.3244 -9.3500 -3.8751 20 6 8.7277 -9.1825 -4.4813 21 6 8.3400 -10.2874 -5.4809 22 6 8.8312 -10.0282 -6.9066 23 6 10.2480 -10.5833 -7.0666 24 8 10.7065 -10.3418 -8.3984 25 6 6.8766 -9.8755 -5.2492 26 6 5.9798 -3.6998 -0.3291 27 6 5.3552 -2.4723 -0.2280 28 1 -0.4850 0.8400 0.0004 29 1 2.1487 -3.5261 0.0035 30 1 3.2707 -5.7080 -0.1886 31 1 5.3334 -6.9520 0.0963 32 1 6.9120 -6.1359 -0.0041 33 1 5.6685 -5.9820 -2.5351 34 1 6.3444 -7.4916 -4.1823 35 1 7.2768 -10.0989 -3.0845 36 1 8.8892 -8.2100 -4.9463 37 1 9.5328 -9.4680 -3.8042 38 1 8.5715 -11.2929 -5.1297 39 1 8.1656 -10.5209 -7.6154 40 1 8.8373 -8.9554 -7.0994 41 1 10.9134 -10.0905 -6.3579 42 1 10.2418 -11.6561 -6.8739 43 1 11.6002 -10.6677 -8.5718 44 1 6.1894 -10.7196 -5.1911 45 1 6.5311 -9.0928 -5.9245 46 1 7.0547 -3.7524 -0.4189 47 1 5.9412 -1.5651 -0.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892714462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:49 Heat of formation + Delta-G solvation = -71.895098 kcal Electronic energy + Delta-G solvation = -26887.305040 eV Core-core repulsion = 22843.159611 eV Total energy + Delta-G solvation = -4044.145428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48471 -39.43245 -38.92909 -37.25840 -36.97881 -34.38694 -33.88765 -32.48034 -31.18158 -30.38523 -29.79414 -26.20395 -26.10980 -25.03332 -24.19347 -22.20099 -21.98948 -20.80865 -20.60227 -20.14154 -18.41232 -17.97647 -17.77389 -17.35945 -16.54724 -16.06006 -15.71900 -15.35585 -14.92612 -14.84898 -14.77379 -14.36543 -14.15917 -13.97936 -13.88737 -13.41703 -13.34755 -12.89654 -12.87255 -12.73259 -12.72096 -12.28630 -12.20977 -12.00542 -11.73078 -11.48308 -11.32490 -10.98117 -10.87490 -10.84975 -10.77608 -10.72489 -10.37683 -10.23552 -10.18393 -9.49359 -9.28837 -8.96226 -8.79498 -8.38531 -7.49265 -6.50828 -4.17819 1.91408 2.02074 2.81845 3.16229 3.18892 3.19919 3.34072 3.68143 4.10469 4.15080 4.15844 4.22959 4.46379 4.49281 4.54956 4.69811 4.74095 4.82494 4.96505 5.01117 5.13424 5.17990 5.24729 5.32813 5.36844 5.40908 5.48224 5.56204 5.61132 5.69985 5.74082 5.76148 5.86435 6.01399 6.02890 6.24675 6.40792 6.44902 6.55695 6.67278 6.84405 6.98005 7.12387 7.14309 7.18664 7.49229 7.69775 7.93319 8.01812 8.60372 8.83743 9.44440 10.56310 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.001642 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.323491 B =17049.128396 C =17558.133687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.166 3.834 11 C -0.224 4.224 12 C -0.052 4.052 13 C -0.206 4.206 14 C 0.196 3.804 15 N -0.739 5.739 16 C 0.701 3.299 17 O -0.598 6.598 18 N -0.739 5.739 19 C 0.144 3.856 20 C -0.150 4.150 21 C -0.108 4.108 22 C -0.107 4.107 23 C 0.075 3.925 24 O -0.578 6.578 25 C -0.141 4.141 26 C -0.056 4.056 27 C -0.195 4.195 28 H 0.281 0.719 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.396 0.604 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.379 0.621 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 -19.116 -12.263 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.070 4.070 13 C -0.207 4.207 14 C 0.074 3.926 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.476 6.476 18 N -0.394 5.394 19 C 0.038 3.962 20 C -0.190 4.190 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.003 4.003 24 O -0.383 6.383 25 C -0.179 4.179 26 C -0.074 4.074 27 C -0.215 4.215 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.230 0.770 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.226 0.774 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.132 0.868 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.870 -19.139 -11.436 27.959 hybrid contribution 0.280 1.018 -0.551 1.191 sum 17.150 -18.121 -11.987 27.680 Atomic orbital electron populations 1.69641 1.05598 1.28670 1.47313 1.24486 0.95041 0.98915 0.95479 0.86174 0.80350 0.81337 0.79016 1.19825 1.20677 1.18325 1.20788 0.76768 0.96724 1.52444 0.87501 1.83576 1.22762 1.25836 1.79554 1.19184 0.91744 0.85503 0.92232 1.21282 1.01246 0.91764 1.10052 1.20708 0.93343 0.96839 0.96146 1.19303 0.93794 0.93574 1.14038 1.19837 0.99756 0.93031 0.80019 1.45497 1.63640 1.20651 1.09555 1.16075 0.78911 0.82007 0.82873 1.90899 1.54745 1.52907 1.49093 1.45150 1.65102 1.22998 1.06114 1.22280 0.92148 0.85917 0.95830 1.23651 0.98177 0.99030 0.98096 1.22322 0.96310 0.99559 0.94463 1.21465 0.94922 1.02085 0.96033 1.22211 0.95882 0.98798 0.83387 1.86475 1.36615 1.84301 1.30934 1.23408 0.96490 1.01497 0.96515 1.20545 0.98443 0.91198 0.97259 1.20215 0.91942 0.97905 1.11415 0.90907 0.84800 0.87084 0.91648 0.91672 0.76885 0.76987 0.86809 0.89623 0.90995 0.88718 0.91029 0.91000 0.93522 0.93709 0.77388 0.90547 0.89394 0.86766 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.61 13.96 55.48 0.77 -23.84 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.05 28.62 -169.99 -4.86 16.19 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.68 9.95 30.89 0.31 -10.37 16 8 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 9 O -0.21 -5.41 8.59 0.03 0.00 -5.41 16 10 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.13 5.25 -104.58 -0.55 -3.68 16 14 C 0.20 2.67 5.80 -5.20 -0.03 2.64 16 15 N -0.74 -8.92 5.55 -66.42 -0.37 -9.29 16 16 C 0.70 9.12 8.57 -86.91 -0.74 8.37 16 17 O -0.60 -10.10 15.96 5.29 0.08 -10.02 16 18 N -0.74 -6.86 5.37 -57.88 -0.31 -7.17 16 19 C 0.14 1.19 4.21 -67.12 -0.28 0.90 16 20 C -0.15 -1.06 7.45 -25.83 -0.19 -1.25 16 21 C -0.11 -0.59 3.65 -89.71 -0.33 -0.92 16 22 C -0.11 -0.64 5.43 -26.73 -0.15 -0.79 16 23 C 0.07 0.42 7.04 37.16 0.26 0.69 16 24 O -0.58 -3.97 13.66 -35.23 -0.48 -4.45 16 25 C -0.14 -0.83 7.39 -25.92 -0.19 -1.02 16 26 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 27 C -0.20 -3.62 9.99 -39.40 -0.39 -4.01 16 28 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.13 2.88 5.64 -52.48 -0.30 2.59 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.40 4.16 8.48 -40.82 -0.35 3.81 16 34 H 0.40 2.74 8.73 -40.82 -0.36 2.39 16 35 H 0.11 1.14 7.50 -51.93 -0.39 0.75 16 36 H 0.09 0.61 7.91 -51.93 -0.41 0.20 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.09 0.46 8.13 -51.93 -0.42 0.04 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 41 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.38 0.92 9.12 45.56 0.42 1.34 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.12 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -32.44 394.65 -9.26 -41.70 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.27 Total: 8.13 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.77 Total: -11.80 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.10 Total: -40.29 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.40 Total: -19.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.44 -9.26 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892714462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.194 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds