Wall clock time and date at job start Wed Apr 1 2020 00:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 120.00233 * 2 1 4 4 H 1.48501 * 109.47209 * 270.00370 * 3 2 1 5 5 H 1.48501 * 109.47001 * 29.99744 * 3 2 1 6 6 H 1.48495 * 109.47360 * 149.99739 * 3 2 1 7 7 C 1.38656 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99994 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00006 * 179.97438 * 7 2 1 10 10 C 1.35756 * 117.00018 * 185.05859 * 9 7 2 11 11 C 1.38875 * 120.06813 * 354.47018 * 10 9 7 12 12 C 1.38102 * 119.92994 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07196 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93528 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47088 * 89.99847 * 14 13 12 16 16 C 1.34783 * 119.99632 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00068 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99729 * 180.02562 * 16 15 14 19 19 C 1.46495 * 119.99977 * 179.97438 * 18 16 15 20 20 C 1.53782 * 113.61634 * 254.13482 * 19 18 16 21 21 C 1.53954 * 87.01929 * 220.04605 * 20 19 18 22 22 C 1.53008 * 113.74030 * 139.94179 * 21 20 19 23 23 C 1.53001 * 109.46667 * 87.40587 * 22 21 20 24 24 O 1.42903 * 109.46623 * 179.97438 * 23 22 21 25 25 C 1.53783 * 113.61462 * 156.52562 * 19 18 16 26 26 C 1.38308 * 120.13572 * 0.25017 * 13 12 11 27 27 C 1.38103 * 120.06460 * 359.45453 * 26 13 12 28 28 H 0.96998 * 120.00240 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.03856 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96438 * 179.97438 * 12 11 10 31 31 H 1.09002 * 109.46986 * 329.99861 * 14 13 12 32 32 H 1.08998 * 109.47500 * 209.99965 * 14 13 12 33 33 H 0.96997 * 120.00196 * 0.02562 * 15 14 13 34 34 H 0.97002 * 119.99591 * 359.97438 * 18 16 15 35 35 H 1.09003 * 112.84863 * 25.33535 * 19 18 16 36 36 H 1.08992 * 113.61162 * 334.56704 * 20 19 18 37 37 H 1.09007 * 113.61161 * 105.47250 * 20 19 18 38 38 H 1.09000 * 113.54146 * 270.81168 * 21 20 19 39 39 H 1.09003 * 109.47040 * 207.40618 * 22 21 20 40 40 H 1.09001 * 109.46799 * 327.40511 * 22 21 20 41 41 H 1.08997 * 109.46756 * 299.99687 * 23 22 21 42 42 H 1.08993 * 109.47314 * 60.00223 * 23 22 21 43 43 H 0.96699 * 114.00076 * 179.97438 * 24 23 22 44 44 H 1.08998 * 113.61556 * 254.53236 * 25 19 18 45 45 H 1.09000 * 113.61013 * 25.43565 * 25 19 18 46 46 H 1.07994 * 119.96673 * 179.70552 * 26 13 12 47 47 H 1.08005 * 120.03025 * 180.27119 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4058 -0.1061 11 6 3.2234 -3.5745 -0.0922 12 6 3.8534 -4.7988 -0.1998 13 6 5.2296 -4.8617 -0.3207 14 6 5.9138 -6.1993 -0.4373 15 7 6.0174 -6.5733 -1.8500 16 6 6.5976 -7.7392 -2.1975 17 8 7.0353 -8.4802 -1.3387 18 7 6.6934 -8.0831 -3.4972 19 6 7.3244 -9.3500 -3.8751 20 6 8.7277 -9.1825 -4.4813 21 6 8.3400 -10.2874 -5.4809 22 6 8.8312 -10.0282 -6.9066 23 6 10.2480 -10.5833 -7.0666 24 8 10.7065 -10.3418 -8.3984 25 6 6.8766 -9.8755 -5.2492 26 6 5.9798 -3.6998 -0.3291 27 6 5.3552 -2.4723 -0.2280 28 1 -0.4850 0.8400 0.0004 29 1 2.1487 -3.5261 0.0035 30 1 3.2707 -5.7080 -0.1886 31 1 5.3334 -6.9520 0.0963 32 1 6.9120 -6.1359 -0.0041 33 1 5.6685 -5.9820 -2.5351 34 1 6.3444 -7.4916 -4.1823 35 1 7.2768 -10.0989 -3.0845 36 1 8.8892 -8.2100 -4.9463 37 1 9.5328 -9.4680 -3.8042 38 1 8.5715 -11.2929 -5.1297 39 1 8.1656 -10.5209 -7.6154 40 1 8.8373 -8.9554 -7.0994 41 1 10.9134 -10.0905 -6.3579 42 1 10.2418 -11.6561 -6.8739 43 1 11.6002 -10.6677 -8.5718 44 1 6.1894 -10.7196 -5.1911 45 1 6.5311 -9.0928 -5.9245 46 1 7.0547 -3.7524 -0.4189 47 1 5.9412 -1.5651 -0.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892714462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:48 Heat of formation + Delta-G solvation = -95.778225 kcal Electronic energy + Delta-G solvation = -26888.340690 eV Core-core repulsion = 22843.159611 eV Total energy + Delta-G solvation = -4045.181079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.35749 -40.89687 -39.82138 -38.59091 -37.66129 -35.59882 -34.72903 -34.41624 -31.97339 -31.82351 -30.99209 -27.78044 -26.65686 -26.29066 -25.08137 -23.71690 -22.71019 -22.02736 -21.67391 -20.73057 -19.86040 -19.35178 -19.04040 -18.24945 -17.42756 -16.80347 -16.64855 -16.46104 -16.12681 -16.00399 -15.77419 -15.66931 -15.56681 -15.37662 -14.86079 -14.67612 -14.51795 -14.29044 -14.06830 -13.90385 -13.40397 -13.35960 -13.27829 -13.10632 -12.70323 -12.57919 -12.47311 -12.33634 -12.29298 -11.93967 -11.82644 -11.43644 -11.30558 -11.29687 -11.22074 -10.90932 -10.80766 -10.27431 -9.84360 -9.67732 -9.10685 -8.50966 -6.24037 0.47438 0.54510 1.32412 1.35385 1.52138 1.86697 2.18372 2.27389 2.75111 3.02686 3.12359 3.28823 3.47910 3.60304 3.67931 3.85912 3.91692 4.01668 4.03205 4.14166 4.24418 4.39897 4.45185 4.53931 4.54794 4.66042 4.72758 4.75661 4.82314 4.82444 4.93004 4.95693 5.00800 5.08461 5.17271 5.22197 5.27365 5.33431 5.45553 5.49752 5.54394 5.70198 5.71107 5.78696 5.88015 6.07610 6.19299 6.83171 6.90111 7.13528 7.56052 7.62781 8.60231 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.001642 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.323491 B =17049.128396 C =17558.133687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.129 3.871 11 C -0.238 4.238 12 C -0.049 4.049 13 C -0.173 4.173 14 C 0.202 3.798 15 N -0.732 5.732 16 C 0.699 3.301 17 O -0.638 6.638 18 N -0.725 5.725 19 C 0.132 3.868 20 C -0.147 4.147 21 C -0.095 4.095 22 C -0.105 4.105 23 C 0.072 3.928 24 O -0.601 6.601 25 C -0.130 4.130 26 C -0.044 4.044 27 C -0.192 4.192 28 H 0.285 0.715 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.407 0.593 34 H 0.410 0.590 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.396 0.604 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.153 0.847 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.991 -20.340 -13.501 31.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.100 0.900 9 O -0.149 6.149 10 C 0.079 3.921 11 C -0.257 4.257 12 C -0.068 4.068 13 C -0.174 4.174 14 C 0.079 3.921 15 N -0.387 5.387 16 C 0.399 3.601 17 O -0.520 6.520 18 N -0.380 5.380 19 C 0.027 3.973 20 C -0.186 4.186 21 C -0.114 4.114 22 C -0.143 4.143 23 C -0.006 4.006 24 O -0.409 6.409 25 C -0.168 4.168 26 C -0.062 4.062 27 C -0.211 4.211 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.151 0.849 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.246 0.754 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.171 0.829 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.680 -20.398 -12.728 31.071 hybrid contribution -0.346 1.025 -0.221 1.104 sum 19.334 -19.373 -12.949 30.279 Atomic orbital electron populations 1.69726 1.06924 1.29642 1.49838 1.25277 0.95854 1.02158 0.95447 0.85224 0.78817 0.77433 0.79300 1.19006 1.19386 1.18649 1.20711 0.78034 0.96161 1.52741 0.89974 1.83524 1.21303 1.27531 1.82566 1.19741 0.93268 0.85044 0.94015 1.21265 1.00308 0.93034 1.11117 1.20914 0.94369 0.96199 0.95295 1.19543 0.93007 0.94626 1.10214 1.19722 0.99837 0.91549 0.81034 1.45245 1.63621 1.20746 1.09134 1.16196 0.78637 0.81672 0.83561 1.90879 1.56497 1.54096 1.50523 1.45075 1.64292 1.23444 1.05150 1.22415 0.93409 0.85100 0.96397 1.23614 0.97073 0.99698 0.98203 1.22245 0.95812 0.99479 0.93891 1.21432 0.95279 1.01599 0.95985 1.22274 0.95667 0.99558 0.83063 1.86424 1.38207 1.84736 1.31544 1.23376 0.96872 1.01801 0.94792 1.20948 1.00329 0.89842 0.95131 1.20517 0.90469 0.99801 1.10288 0.90550 0.87277 0.84897 0.91766 0.90906 0.75701 0.75388 0.88716 0.89465 0.91669 0.87831 0.91204 0.91743 0.93174 0.92555 0.75426 0.89940 0.88443 0.82903 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 13.96 21.61 0.30 -53.71 16 2 C 0.01 0.65 5.49 84.83 0.47 1.11 16 3 Si 0.97 44.35 28.62 68.60 1.96 46.31 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.40 -22.95 9.95 67.92 0.68 -22.28 16 8 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -12.68 8.59 -22.80 -0.20 -12.88 16 10 C 0.13 5.70 6.65 22.57 0.15 5.85 16 11 C -0.24 -9.84 9.17 22.39 0.21 -9.64 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 13 C -0.17 -4.70 5.25 -19.84 -0.10 -4.80 16 14 C 0.20 4.79 5.80 85.63 0.50 5.28 16 15 N -0.73 -15.36 5.55 -482.30 -2.68 -18.04 16 16 C 0.70 16.55 8.57 179.05 1.53 18.08 16 17 O -0.64 -20.53 15.96 -3.98 -0.06 -20.60 16 18 N -0.72 -11.76 5.37 -455.29 -2.44 -14.21 16 19 C 0.13 1.94 4.21 45.52 0.19 2.13 16 20 C -0.15 -1.78 7.45 31.18 0.23 -1.55 16 21 C -0.10 -0.84 3.65 -10.20 -0.04 -0.88 16 22 C -0.11 -1.04 5.43 30.60 0.17 -0.88 16 23 C 0.07 0.68 7.04 71.98 0.51 1.18 16 24 O -0.60 -7.28 13.66 -148.98 -2.03 -9.31 16 25 C -0.13 -1.22 7.39 31.12 0.23 -0.99 16 26 C -0.04 -1.21 9.69 22.25 0.22 -1.00 16 27 C -0.19 -6.73 9.99 22.39 0.22 -6.50 16 28 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.11 5.04 5.64 -2.91 -0.02 5.02 16 30 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 32 H 0.07 1.70 8.08 -2.39 -0.02 1.69 16 33 H 0.41 7.08 8.48 -92.71 -0.79 6.30 16 34 H 0.41 4.48 8.73 -92.71 -0.81 3.67 16 35 H 0.09 1.80 7.50 -2.39 -0.02 1.79 16 36 H 0.09 1.05 7.91 -2.39 -0.02 1.03 16 37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.10 0.77 8.13 -2.39 -0.02 0.75 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.74 7.86 -2.39 -0.02 0.72 16 41 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.40 1.31 9.12 -74.06 -0.68 0.63 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.76 8.07 -2.39 -0.02 0.74 16 46 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 47 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -73.20 394.65 -1.04 -74.23 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -1.25 Total: 24.43 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.37 Total: -16.23 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -4.82 Total: -85.96 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -2.29 Total: -42.79 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.96 Total: 46.31 kcal Total: -73.20 -1.04 -74.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892714462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.546 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds