Wall clock time and date at job start Wed Apr 1 2020 00:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 N 1.46505 * 109.46837 * 270.01794 * 14 13 12 16 16 C 1.34769 * 119.99695 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99947 * 180.02562 * 16 15 14 19 19 C 1.46507 * 120.00323 * 180.02562 * 18 16 15 20 20 C 1.52994 * 109.47038 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.46715 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47084 * 55.00109 * 21 20 19 23 23 O 1.42902 * 109.47610 * 294.99886 * 21 20 19 24 24 C 1.53007 * 109.47149 * 174.99932 * 21 20 19 25 25 C 1.53003 * 117.49960 * 248.75090 * 24 21 20 26 26 C 1.52994 * 117.49859 * 180.08787 * 24 21 20 27 27 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 28 28 C 1.38101 * 120.07071 * 359.95556 * 27 13 12 29 29 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 32 32 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 33 33 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 34 34 H 0.96998 * 119.99976 * 0.02562 * 15 14 13 35 35 H 0.96998 * 119.99724 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.46776 * 299.99985 * 19 18 16 37 37 H 1.08996 * 109.46808 * 59.99668 * 19 18 16 38 38 H 1.08991 * 109.47223 * 299.99389 * 20 19 18 39 39 H 1.09006 * 109.47303 * 60.00227 * 20 19 18 40 40 H 0.96701 * 113.99832 * 300.00429 * 23 21 20 41 41 H 1.09000 * 115.54357 * 34.41759 * 24 21 20 42 42 H 1.08999 * 117.49565 * 359.97438 * 25 24 21 43 43 H 1.08998 * 117.49615 * 145.02339 * 25 24 21 44 44 H 1.09004 * 117.49772 * 214.97447 * 26 24 21 45 45 H 1.08996 * 117.50555 * 0.02562 * 26 24 21 46 46 H 1.07999 * 119.96326 * 179.97438 * 27 13 12 47 47 H 1.07997 * 120.03156 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2546 -6.6939 -0.8897 16 6 6.8769 -7.8811 -1.0298 17 8 7.1546 -8.5416 -0.0476 18 7 7.1914 -8.3362 -2.2588 19 6 7.8674 -9.6271 -2.4113 20 6 8.1064 -9.9053 -3.8966 21 6 8.8130 -11.2530 -4.0556 22 1 8.2326 -12.0287 -3.5560 23 8 10.1146 -11.1806 -3.4703 24 6 8.9405 -11.5896 -5.5427 25 6 8.1079 -12.7568 -6.0769 26 6 9.6223 -12.9084 -5.9126 27 6 3.8531 -4.7987 0.2042 28 6 3.2232 -3.5745 0.0950 29 1 -0.4849 0.8401 0.0004 30 1 5.9419 -1.5655 0.2316 31 1 7.0534 -3.7517 0.4353 32 1 6.8228 -6.0905 1.0369 33 1 5.2443 -6.9068 0.9360 34 1 6.0326 -6.1672 -1.6734 35 1 6.9694 -7.8095 -3.0425 36 1 8.8231 -9.6007 -1.8877 37 1 7.2439 -10.4156 -1.9900 38 1 7.1506 -9.9318 -4.4197 39 1 8.7298 -9.1167 -4.3183 40 1 10.6872 -10.5097 -3.8666 41 1 9.0976 -10.7386 -6.2055 42 1 7.4696 -13.2852 -5.3687 43 1 7.7177 -12.6740 -7.0912 44 1 10.2275 -12.9252 -6.8190 45 1 9.9796 -13.5365 -5.0966 46 1 3.2703 -5.7080 0.1940 47 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892715563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:10 Heat of formation + Delta-G solvation = -66.161789 kcal Electronic energy + Delta-G solvation = -26707.292882 eV Core-core repulsion = 22663.396068 eV Total energy + Delta-G solvation = -4043.896814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.22 seconds Orbital eigenvalues (eV) -40.07996 -39.32999 -39.08357 -37.11770 -36.17464 -35.15393 -34.35993 -32.49495 -31.65004 -30.38882 -29.86292 -26.75297 -25.73254 -24.36273 -22.87358 -22.29782 -22.18029 -21.49794 -20.85084 -20.60207 -18.50784 -17.98072 -17.37790 -17.13501 -16.53420 -16.31396 -15.88706 -15.40833 -15.02166 -14.87421 -14.73247 -14.19772 -14.11944 -14.02688 -13.87871 -13.77814 -13.38230 -13.23522 -12.86343 -12.71903 -12.40720 -12.27854 -12.06122 -12.03250 -11.62615 -11.48593 -11.38509 -11.08415 -10.95181 -10.87073 -10.76754 -10.74553 -10.45509 -10.22820 -10.14202 -9.49389 -9.32616 -8.96385 -8.78778 -8.38503 -7.49224 -6.50832 -4.17873 1.91190 2.02066 2.77772 3.16560 3.17931 3.19441 3.23610 3.33762 3.88797 4.05350 4.15741 4.20148 4.34544 4.47432 4.48331 4.52748 4.58723 4.73087 4.84685 4.90152 5.02013 5.14737 5.15698 5.21282 5.28039 5.37274 5.39605 5.56354 5.57142 5.62771 5.70819 5.74283 5.75871 5.89806 6.02468 6.24816 6.33262 6.44979 6.55979 6.67327 6.83002 6.96741 7.12517 7.18675 7.18751 7.49241 7.69737 7.93340 8.01571 8.61015 8.83705 9.44373 10.56321 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.001554 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.761644 B =18015.131796 C =18479.742438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.166 3.834 11 C -0.195 4.195 12 C -0.056 4.056 13 C -0.205 4.205 14 C 0.196 3.804 15 N -0.739 5.739 16 C 0.700 3.300 17 O -0.595 6.595 18 N -0.752 5.752 19 C 0.142 3.858 20 C -0.161 4.161 21 C 0.142 3.858 22 H 0.101 0.899 23 O -0.555 6.555 24 C -0.196 4.196 25 C -0.174 4.174 26 C -0.167 4.167 27 C -0.052 4.052 28 C -0.224 4.224 29 H 0.281 0.719 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.376 0.624 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.933 -19.900 -11.749 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.075 4.075 13 C -0.207 4.207 14 C 0.073 3.927 15 N -0.394 5.394 16 C 0.400 3.600 17 O -0.474 6.474 18 N -0.408 5.408 19 C 0.018 3.982 20 C -0.199 4.199 21 C 0.082 3.918 22 H 0.119 0.881 23 O -0.361 6.361 24 C -0.214 4.214 25 C -0.211 4.211 26 C -0.204 4.204 27 C -0.070 4.070 28 C -0.244 4.244 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.228 0.772 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.223 0.777 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.129 0.871 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.811 -20.621 -10.443 28.581 hybrid contribution -0.074 1.724 -1.267 2.141 sum 16.736 -18.897 -11.710 27.827 Atomic orbital electron populations 1.69644 1.05600 1.28662 1.47329 1.24489 0.95045 0.98915 0.95477 0.86170 0.80351 0.81337 0.79001 1.19837 1.20700 1.18307 1.20790 0.76769 0.96725 1.52432 0.87502 1.83571 1.22763 1.25852 1.79563 1.19186 0.91741 0.85503 0.92228 1.20211 0.91949 0.97918 1.11386 1.20547 0.98441 0.91218 0.97244 1.19307 0.93752 0.93510 1.14107 1.19839 0.98662 0.91887 0.82282 1.45472 1.63357 1.20269 1.10272 1.16013 0.78794 0.81657 0.83518 1.90919 1.60304 1.58631 1.37527 1.45141 1.65468 1.23233 1.06991 1.21072 0.97660 0.84229 0.95228 1.22489 1.02380 0.98372 0.96633 1.21374 0.84151 0.96298 0.89986 0.88075 1.86629 1.24826 1.61913 1.62688 1.23084 1.07171 0.93480 0.97688 1.22984 0.94271 1.01328 1.02516 1.22879 0.95068 0.99182 1.03229 1.20712 0.93392 0.96843 0.96095 1.21281 1.01242 0.91766 1.10070 0.90911 0.86380 0.86749 0.91631 0.91625 0.76941 0.77201 0.90987 0.91807 0.90080 0.90795 0.77716 0.87572 0.88482 0.88598 0.88779 0.88265 0.87080 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.61 13.96 55.48 0.77 -23.84 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.03 28.62 -169.99 -4.86 16.17 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16 8 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 9 O -0.21 -5.41 8.59 0.05 0.00 -5.40 16 10 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.20 -3.62 9.99 -39.39 -0.39 -4.01 16 12 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.14 5.25 -104.57 -0.55 -3.69 16 14 C 0.20 2.70 5.80 -5.19 -0.03 2.67 16 15 N -0.74 -9.00 5.55 -66.42 -0.37 -9.37 16 16 C 0.70 9.35 8.57 -86.92 -0.74 8.61 16 17 O -0.60 -10.47 16.34 5.29 0.09 -10.39 16 18 N -0.75 -7.04 5.56 -65.22 -0.36 -7.41 16 19 C 0.14 1.22 5.57 -4.04 -0.02 1.20 16 20 C -0.16 -0.83 4.99 -26.73 -0.13 -0.96 16 21 C 0.14 0.79 3.16 -26.73 -0.08 0.70 16 22 H 0.10 0.63 7.90 -51.93 -0.41 0.22 16 23 O -0.56 -3.75 12.78 -35.23 -0.45 -4.20 16 24 C -0.20 -0.93 5.36 -90.62 -0.49 -1.42 16 25 C -0.17 -0.82 10.18 -26.69 -0.27 -1.09 16 26 C -0.17 -0.83 10.16 -26.69 -0.27 -1.10 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 28 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 29 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.07 0.92 8.08 -51.94 -0.42 0.50 16 33 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.40 4.12 8.48 -40.82 -0.35 3.77 16 35 H 0.39 2.62 8.49 -40.82 -0.35 2.27 16 36 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 1.35 9.05 45.56 0.41 1.76 16 41 H 0.11 0.44 8.11 -51.93 -0.42 0.02 16 42 H 0.10 0.44 8.05 -51.93 -0.42 0.02 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -32.29 398.87 -9.64 -41.92 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.30 Total: 8.33 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -4.16 Total: -11.83 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.04 Total: -40.61 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.36 Total: -19.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.29 -9.64 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892715563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.237 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.22 seconds