Wall clock time and date at job start Wed Apr 1 2020 00:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 N 1.46505 * 109.46837 * 270.01794 * 14 13 12 16 16 C 1.34769 * 119.99695 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99947 * 180.02562 * 16 15 14 19 19 C 1.46507 * 120.00323 * 180.02562 * 18 16 15 20 20 C 1.52994 * 109.47038 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.46715 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47084 * 55.00109 * 21 20 19 23 23 O 1.42902 * 109.47610 * 294.99886 * 21 20 19 24 24 C 1.53007 * 109.47149 * 174.99932 * 21 20 19 25 25 C 1.53003 * 117.49960 * 248.75090 * 24 21 20 26 26 C 1.52994 * 117.49859 * 180.08787 * 24 21 20 27 27 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 28 28 C 1.38101 * 120.07071 * 359.95556 * 27 13 12 29 29 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 32 32 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 33 33 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 34 34 H 0.96998 * 119.99976 * 0.02562 * 15 14 13 35 35 H 0.96998 * 119.99724 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.46776 * 299.99985 * 19 18 16 37 37 H 1.08996 * 109.46808 * 59.99668 * 19 18 16 38 38 H 1.08991 * 109.47223 * 299.99389 * 20 19 18 39 39 H 1.09006 * 109.47303 * 60.00227 * 20 19 18 40 40 H 0.96701 * 113.99832 * 300.00429 * 23 21 20 41 41 H 1.09000 * 115.54357 * 34.41759 * 24 21 20 42 42 H 1.08999 * 117.49565 * 359.97438 * 25 24 21 43 43 H 1.08998 * 117.49615 * 145.02339 * 25 24 21 44 44 H 1.09004 * 117.49772 * 214.97447 * 26 24 21 45 45 H 1.08996 * 117.50555 * 0.02562 * 26 24 21 46 46 H 1.07999 * 119.96326 * 179.97438 * 27 13 12 47 47 H 1.07997 * 120.03156 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2546 -6.6939 -0.8897 16 6 6.8769 -7.8811 -1.0298 17 8 7.1546 -8.5416 -0.0476 18 7 7.1914 -8.3362 -2.2588 19 6 7.8674 -9.6271 -2.4113 20 6 8.1064 -9.9053 -3.8966 21 6 8.8130 -11.2530 -4.0556 22 1 8.2326 -12.0287 -3.5560 23 8 10.1146 -11.1806 -3.4703 24 6 8.9405 -11.5896 -5.5427 25 6 8.1079 -12.7568 -6.0769 26 6 9.6223 -12.9084 -5.9126 27 6 3.8531 -4.7987 0.2042 28 6 3.2232 -3.5745 0.0950 29 1 -0.4849 0.8401 0.0004 30 1 5.9419 -1.5655 0.2316 31 1 7.0534 -3.7517 0.4353 32 1 6.8228 -6.0905 1.0369 33 1 5.2443 -6.9068 0.9360 34 1 6.0326 -6.1672 -1.6734 35 1 6.9694 -7.8095 -3.0425 36 1 8.8231 -9.6007 -1.8877 37 1 7.2439 -10.4156 -1.9900 38 1 7.1506 -9.9318 -4.4197 39 1 8.7298 -9.1167 -4.3183 40 1 10.6872 -10.5097 -3.8666 41 1 9.0976 -10.7386 -6.2055 42 1 7.4696 -13.2852 -5.3687 43 1 7.7177 -12.6740 -7.0912 44 1 10.2275 -12.9252 -6.8190 45 1 9.9796 -13.5365 -5.0966 46 1 3.2703 -5.7080 0.1940 47 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892715563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:58 Heat of formation + Delta-G solvation = -89.670567 kcal Electronic energy + Delta-G solvation = -26708.312299 eV Core-core repulsion = 22663.396068 eV Total energy + Delta-G solvation = -4044.916231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.49 seconds Orbital eigenvalues (eV) -41.19558 -40.76735 -39.63648 -38.64946 -36.71053 -35.92537 -35.57373 -34.44333 -32.45482 -31.86014 -31.10699 -27.92522 -27.03878 -25.69192 -23.71456 -23.24896 -22.86774 -22.22175 -21.98923 -21.62234 -19.86845 -19.47480 -19.07597 -17.62701 -17.44083 -16.97936 -16.70534 -16.59039 -16.13981 -16.08190 -15.82441 -15.61946 -15.49235 -15.35961 -14.80806 -14.73677 -14.60313 -14.33305 -14.22250 -14.05120 -13.68906 -13.35883 -13.10459 -12.97056 -12.58257 -12.47173 -12.40126 -12.31056 -12.21679 -11.93654 -11.84000 -11.49035 -11.42124 -11.30167 -11.11012 -10.91669 -10.76810 -10.35925 -9.84428 -9.72028 -9.10561 -8.50734 -6.23858 0.47281 0.54754 1.32780 1.36134 1.52238 1.81845 2.18178 2.27614 2.74339 2.80392 3.00064 3.14784 3.37776 3.57336 3.69579 3.85349 3.92632 4.01799 4.06076 4.09351 4.14372 4.14701 4.39668 4.44830 4.46435 4.54637 4.69794 4.70591 4.75948 4.81090 4.82129 4.95839 5.03541 5.11408 5.13697 5.22444 5.25995 5.33507 5.33795 5.47745 5.53110 5.54338 5.71270 5.78927 5.88174 6.04067 6.19402 6.83384 6.88226 7.12305 7.56205 7.60734 8.60464 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.001554 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.761644 B =18015.131796 C =18479.742438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.129 3.871 11 C -0.191 4.191 12 C -0.044 4.044 13 C -0.173 4.173 14 C 0.202 3.798 15 N -0.730 5.730 16 C 0.697 3.303 17 O -0.640 6.640 18 N -0.734 5.734 19 C 0.144 3.856 20 C -0.145 4.145 21 C 0.143 3.857 22 H 0.089 0.911 23 O -0.575 6.575 24 C -0.190 4.190 25 C -0.176 4.176 26 C -0.173 4.173 27 C -0.049 4.049 28 C -0.238 4.238 29 H 0.285 0.715 30 H 0.131 0.869 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.411 0.589 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.388 0.612 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.133 0.867 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.676 -20.521 -12.950 31.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.100 0.900 9 O -0.149 6.149 10 C 0.080 3.920 11 C -0.210 4.210 12 C -0.062 4.062 13 C -0.174 4.174 14 C 0.078 3.922 15 N -0.386 5.386 16 C 0.397 3.603 17 O -0.522 6.522 18 N -0.391 5.391 19 C 0.019 3.981 20 C -0.183 4.183 21 C 0.083 3.917 22 H 0.107 0.893 23 O -0.382 6.382 24 C -0.208 4.208 25 C -0.213 4.213 26 C -0.210 4.210 27 C -0.068 4.068 28 C -0.257 4.257 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.171 0.829 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.244 0.756 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.238 0.762 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.151 0.849 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.585 -21.265 -11.702 31.188 hybrid contribution -0.697 1.538 -0.876 1.902 sum 18.888 -19.727 -12.578 30.068 Atomic orbital electron populations 1.69730 1.06942 1.29637 1.49851 1.25284 0.95856 1.02179 0.95435 0.85217 0.78821 0.77397 0.79306 1.18991 1.19454 1.18581 1.20713 0.78043 0.96156 1.52729 0.89987 1.83519 1.21287 1.27539 1.82549 1.19743 0.93268 0.85039 0.93992 1.20512 0.90465 0.99801 1.10245 1.20948 1.00332 0.89845 0.95090 1.19532 0.92993 0.94537 1.10323 1.19723 0.98731 0.90531 0.83222 1.45197 1.63101 1.20173 1.10085 1.16165 0.78632 0.81485 0.84003 1.90898 1.62086 1.59851 1.39317 1.45005 1.64324 1.23408 1.06367 1.21087 0.96276 0.83274 0.97430 1.22379 1.03277 0.98601 0.94088 1.21332 0.83716 0.96207 0.90426 0.89300 1.86601 1.25516 1.62736 1.63387 1.23055 1.06903 0.93756 0.97122 1.23055 0.94037 1.01264 1.02954 1.22895 0.95490 0.99397 1.03262 1.20914 0.94402 0.96209 0.95247 1.21263 1.00305 0.93025 1.11134 0.90559 0.85065 0.82866 0.90914 0.91837 0.75567 0.75219 0.92663 0.93394 0.88902 0.88986 0.76216 0.86305 0.88693 0.87762 0.88009 0.89353 0.84920 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 13.96 21.61 0.30 -53.66 16 2 C 0.01 0.63 5.49 84.83 0.47 1.10 16 3 Si 0.97 44.20 28.62 68.60 1.96 46.16 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.40 -22.89 9.95 67.92 0.68 -22.21 16 8 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 9 O -0.24 -12.61 8.59 -22.72 -0.20 -12.80 16 10 C 0.13 5.68 6.65 22.58 0.15 5.83 16 11 C -0.19 -6.66 9.99 22.39 0.22 -6.44 16 12 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 13 C -0.17 -4.69 5.25 -19.83 -0.10 -4.79 16 14 C 0.20 4.81 5.80 85.63 0.50 5.31 16 15 N -0.73 -15.25 5.55 -482.31 -2.68 -17.93 16 16 C 0.70 16.86 8.57 179.06 1.53 18.39 16 17 O -0.64 -21.50 16.34 -3.98 -0.07 -21.57 16 18 N -0.73 -11.78 5.56 -478.53 -2.66 -14.44 16 19 C 0.14 2.22 5.57 86.38 0.48 2.70 16 20 C -0.15 -1.12 4.99 30.59 0.15 -0.97 16 21 C 0.14 1.36 3.16 30.60 0.10 1.46 16 22 H 0.09 1.05 7.90 -2.39 -0.02 1.03 16 23 O -0.57 -7.04 12.78 -148.98 -1.90 -8.94 16 24 C -0.19 -1.41 5.36 -10.79 -0.06 -1.47 16 25 C -0.18 -1.38 10.18 30.62 0.31 -1.07 16 26 C -0.17 -1.51 10.16 30.62 0.31 -1.20 16 27 C -0.05 -1.56 9.69 22.25 0.22 -1.35 16 28 C -0.24 -9.80 9.17 22.39 0.21 -9.60 16 29 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.06 1.62 8.08 -2.38 -0.02 1.60 16 34 H 0.41 6.84 8.48 -92.71 -0.79 6.05 16 35 H 0.41 3.95 8.49 -92.71 -0.79 3.16 16 36 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.39 2.11 9.05 -74.06 -0.67 1.44 16 41 H 0.12 0.61 8.11 -2.39 -0.02 0.59 16 42 H 0.09 0.77 8.05 -2.39 -0.02 0.75 16 43 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 44 H 0.10 0.71 8.14 -2.38 -0.02 0.70 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 47 H 0.11 5.02 5.64 -2.91 -0.02 5.00 16 Total: -1.00 -73.38 398.87 -1.09 -74.48 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -1.23 Total: 23.99 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.37 Total: -15.28 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -5.04 Total: -86.03 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -2.16 Total: -43.31 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.96 Total: 46.16 kcal Total: -73.38 -1.09 -74.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892715563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.194 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.49 seconds