Wall clock time and date at job start Tue Mar 31 2020 17:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46902 * 109.47515 * 335.60967 * 3 2 1 5 5 C 1.46899 * 110.99638 * 66.04461 * 4 3 2 6 6 C 1.47210 * 109.47039 * 200.36572 * 5 4 3 7 7 N 5.02989 * 109.77279 * 346.48150 * 2 1 3 8 8 C 1.46897 * 111.00471 * 190.00163 * 4 3 2 9 9 C 1.50696 * 109.47358 * 163.55342 * 8 4 3 10 10 C 1.35084 * 126.07910 * 106.39833 * 9 8 4 11 11 N 1.35032 * 107.98315 * 180.24587 * 10 9 8 12 12 C 1.46502 * 125.93455 * 179.74375 * 11 10 9 13 13 C 1.50697 * 109.47189 * 125.00049 * 12 11 10 14 14 H 1.08003 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99907 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99654 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99912 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47433 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46922 * 119.99970 * 17 15 13 20 20 H 1.48501 * 109.47199 * 239.99768 * 17 15 13 21 21 N 1.40074 * 108.13668 * 359.76060 * 11 10 9 22 22 C 1.31620 * 108.10939 * 0.02562 * 21 11 10 23 23 C 1.48421 * 126.03821 * 179.97438 * 22 21 11 24 24 C 1.39318 * 120.11935 * 317.53624 * 23 22 21 25 25 C 1.38024 * 119.88239 * 179.97438 * 24 23 22 26 26 C 1.38323 * 120.11710 * 359.97438 * 25 24 23 27 27 C 1.38319 * 120.24055 * 0.02562 * 26 25 24 28 28 C 1.38020 * 120.12156 * 359.97438 * 27 26 25 29 29 H 4.40885 * 5.52135 * 179.97438 * 4 1 2 30 30 H 1.09005 * 109.47405 * 215.61022 * 3 2 1 31 31 H 1.09003 * 109.47117 * 95.60956 * 3 2 1 32 32 H 1.09003 * 109.47465 * 320.36345 * 5 4 3 33 33 H 1.09004 * 109.47097 * 80.37025 * 5 4 3 34 34 H 1.08995 * 109.46929 * 43.54867 * 8 4 3 35 35 H 1.09004 * 109.46825 * 283.55653 * 8 4 3 36 36 H 1.08007 * 126.00711 * 359.97438 * 10 9 8 37 37 H 1.09002 * 109.46633 * 244.99956 * 12 11 10 38 38 H 1.08999 * 109.46441 * 4.99579 * 12 11 10 39 39 H 0.97003 * 119.99670 * 179.97438 * 16 15 13 40 40 H 1.08004 * 120.06267 * 359.96291 * 24 23 22 41 41 H 1.07995 * 119.94046 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.87811 * 179.74342 * 26 25 24 43 43 H 1.07995 * 119.93951 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.06432 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2605 0.5719 5 6 2.7874 -2.3992 -0.2880 6 6 2.8385 -3.6422 0.4991 7 7 2.8757 -4.6022 1.1065 8 6 4.5851 -1.2035 0.8079 9 6 4.9859 -2.3151 1.7432 10 6 5.6492 -3.4413 1.4022 11 7 5.8122 -4.1833 2.5186 12 6 6.4773 -5.4864 2.5953 13 6 7.5742 -5.4306 3.6271 14 1 7.7579 -4.5157 4.1710 15 6 8.3440 -6.5470 3.8760 16 7 8.1206 -7.6608 3.2133 17 14 9.7042 -6.4775 5.1544 18 1 9.7503 -5.1203 5.7550 19 1 9.4364 -7.4797 6.2171 20 1 11.0070 -6.7778 4.5079 21 7 5.2345 -3.4910 3.5905 22 6 4.7375 -2.3631 3.1288 23 6 4.0347 -1.3273 3.9264 24 6 3.1030 -1.7014 4.8923 25 6 2.4528 -0.7341 5.6315 26 6 2.7251 0.6047 5.4152 27 6 3.6492 0.9817 4.4575 28 6 4.3052 0.0227 3.7126 29 1 -1.0497 -0.0003 0.0003 30 1 3.0090 0.8363 0.5984 31 1 3.0093 0.1013 -1.0228 32 1 1.7811 -2.2609 -0.6836 33 1 3.4968 -2.4623 -1.1131 34 1 4.8431 -0.2429 1.2535 35 1 5.1123 -1.3179 -0.1393 36 1 5.9858 -3.7043 0.4102 37 1 5.7512 -6.2488 2.8779 38 1 6.9045 -5.7339 1.6236 39 1 8.6624 -8.4462 3.3882 40 1 2.8898 -2.7464 5.0622 41 1 1.7307 -1.0230 6.3808 42 1 2.2110 1.3585 5.9929 43 1 3.8578 2.0284 4.2923 44 1 5.0269 0.3180 2.9654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:01 Heat of formation + Delta-G solvation = 200.527830 kcal Electronic energy + Delta-G solvation = -27887.518549 eV Core-core repulsion = 24194.787936 eV Total energy + Delta-G solvation = -3692.730613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.149 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.66543 -38.54509 -38.21507 -35.68286 -33.92589 -33.15343 -32.24502 -30.91167 -30.43319 -29.84569 -28.75513 -27.53236 -25.88876 -23.64765 -23.12960 -22.24918 -21.55709 -19.91356 -19.24215 -18.29647 -17.76526 -16.69747 -16.53592 -16.15454 -15.85161 -15.22710 -14.89458 -14.63566 -14.50805 -14.14836 -13.93535 -13.88687 -13.37092 -13.31869 -13.15642 -12.83444 -12.62998 -12.37333 -12.26096 -12.22458 -12.02648 -11.86250 -11.54472 -11.37189 -10.97817 -10.94228 -10.84928 -10.76128 -10.54642 -10.34355 -10.24861 -9.88061 -9.69687 -8.95851 -8.68555 -8.62961 -8.55941 -8.11573 -7.53717 -6.24221 -4.29411 1.46637 1.66586 2.36158 2.70733 2.80193 3.08820 3.18480 3.22463 3.30100 3.35533 3.37634 3.54139 4.07873 4.18829 4.21532 4.31815 4.39707 4.94531 5.03120 5.04774 5.11159 5.11608 5.15285 5.17446 5.25445 5.29725 5.34964 5.48150 5.59311 5.64444 5.79408 5.80072 5.85346 6.13515 6.20686 6.34054 6.42793 6.60608 6.72159 6.77348 6.80450 6.86037 7.00657 7.09973 7.21456 7.36799 7.48405 7.69947 7.87040 7.98636 7.99442 8.58892 8.79943 9.36316 10.84732 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.003774 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.374290 B = 7417.863336 C = 8893.195315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 C 0.167 3.833 4 N -0.526 5.526 5 C 0.154 3.846 6 C 0.205 3.795 7 N -0.409 5.409 8 C 0.139 3.861 9 C -0.254 4.254 10 C 0.058 3.942 11 N -0.309 5.309 12 C 0.259 3.741 13 C -0.528 4.528 14 H 0.070 0.930 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.282 1.282 21 N -0.261 5.261 22 C 0.095 3.905 23 C 0.026 3.974 24 C -0.096 4.096 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.100 4.100 29 H 0.215 0.785 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.158 0.842 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.266 0.734 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 19.318 -8.573 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.180 4.180 3 C 0.040 3.960 4 N -0.251 5.251 5 C 0.024 3.976 6 C -0.114 4.114 7 N -0.086 5.086 8 C 0.012 3.988 9 C -0.267 4.267 10 C -0.093 4.093 11 N -0.087 5.087 12 C 0.141 3.859 13 C -0.566 4.566 14 H 0.088 0.912 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 N -0.085 5.085 22 C -0.068 4.068 23 C 0.024 3.976 24 C -0.115 4.115 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.119 4.119 29 H 0.231 0.769 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.851 16.669 -6.205 21.373 hybrid contribution 0.819 0.642 -1.042 1.472 sum -11.032 17.311 -7.247 21.769 Atomic orbital electron populations 1.24870 0.95903 0.99522 1.01267 1.22815 0.94172 1.00931 1.00032 1.19007 0.85077 0.92663 0.99214 1.61782 1.15986 1.00897 1.46480 1.19408 1.03406 0.83422 0.91370 1.28663 0.93875 0.94349 0.94559 1.81299 1.07856 1.12659 1.06827 1.20398 0.84324 0.97517 0.96582 1.19399 1.13736 0.99742 0.93801 1.22124 1.00965 0.92784 0.93411 1.49282 1.39156 1.17048 1.03255 1.19721 0.92286 0.74558 0.99293 1.21278 1.15155 0.98676 1.21507 0.91223 1.24946 0.97766 0.94841 0.96504 1.69939 1.40218 1.01845 1.41240 0.86276 0.80901 0.78435 0.80940 1.19490 1.20661 1.20767 1.77683 1.14346 1.05155 1.11321 1.20332 1.00467 0.94059 0.91971 1.17759 0.94740 0.90913 0.94166 1.21225 0.95636 0.99696 0.94934 1.21007 1.00110 0.93010 0.99776 1.21059 0.98879 0.95865 0.98810 1.20935 0.97459 0.98848 0.96843 1.21044 0.99624 0.91679 0.99602 0.76852 0.87822 0.91924 0.87338 0.90262 0.89670 0.93492 0.82511 0.93603 0.93051 0.92389 0.86183 0.86460 0.86686 0.86399 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.18 -1.61 12.23 -37.13 -0.45 -2.06 16 3 C 0.17 1.25 5.45 -6.61 -0.04 1.21 16 4 N -0.53 -5.42 4.42 -243.10 -1.08 -6.50 16 5 C 0.15 1.52 5.34 -6.61 -0.04 1.49 16 6 C 0.20 3.09 12.59 -20.74 -0.26 2.83 16 7 N -0.41 -7.85 17.97 42.18 0.76 -7.10 16 8 C 0.14 1.53 4.94 -4.98 -0.02 1.50 16 9 C -0.25 -4.14 3.87 -104.76 -0.41 -4.55 16 10 C 0.06 1.09 9.50 -17.26 -0.16 0.92 16 11 N -0.31 -7.14 3.67 -62.58 -0.23 -7.37 16 12 C 0.26 6.79 6.26 -5.19 -0.03 6.76 16 13 C -0.53 -14.98 9.23 -34.44 -0.32 -15.30 16 14 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 17 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 N -0.26 -6.13 12.44 33.43 0.42 -5.71 16 22 C 0.10 1.83 6.67 -82.78 -0.55 1.28 16 23 C 0.03 0.44 5.74 -104.89 -0.60 -0.17 16 24 C -0.10 -1.58 9.78 -39.26 -0.38 -1.96 16 25 C -0.12 -1.63 10.03 -39.63 -0.40 -2.03 16 26 C -0.13 -1.51 10.04 -39.52 -0.40 -1.90 16 27 C -0.12 -1.42 10.03 -39.63 -0.40 -1.82 16 28 C -0.10 -1.35 8.91 -39.26 -0.35 -1.70 16 29 H 0.21 1.16 7.80 -54.11 -0.42 0.74 16 30 H 0.10 0.69 7.86 -51.93 -0.41 0.28 16 31 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 32 H 0.11 0.89 6.84 -51.93 -0.36 0.54 16 33 H 0.08 0.57 7.76 -51.93 -0.40 0.17 16 34 H 0.09 0.83 5.44 -51.93 -0.28 0.54 16 35 H 0.05 0.42 7.78 -51.93 -0.40 0.01 16 36 H 0.16 2.47 8.06 -52.48 -0.42 2.05 16 37 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.05 1.33 8.07 -51.93 -0.42 0.91 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 1.42 6.20 -52.49 -0.33 1.09 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -34.73 388.41 -8.43 -43.15 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.52 Total: 0.98 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -4.34 Total: -14.93 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.60 Total: -51.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.73 -8.43 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.682 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds