Wall clock time and date at job start Tue Mar 31 2020 17:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46902 * 109.47515 * 335.60967 * 3 2 1 5 5 C 1.46899 * 110.99638 * 66.04461 * 4 3 2 6 6 C 1.47210 * 109.47039 * 200.36572 * 5 4 3 7 7 N 5.02989 * 109.77279 * 346.48150 * 2 1 3 8 8 C 1.46897 * 111.00471 * 190.00163 * 4 3 2 9 9 C 1.50696 * 109.47358 * 163.55342 * 8 4 3 10 10 C 1.35084 * 126.07910 * 106.39833 * 9 8 4 11 11 N 1.35032 * 107.98315 * 180.24587 * 10 9 8 12 12 C 1.46502 * 125.93455 * 179.74375 * 11 10 9 13 13 C 1.50697 * 109.47189 * 125.00049 * 12 11 10 14 14 H 1.08003 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99907 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99654 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99912 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47433 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46922 * 119.99970 * 17 15 13 20 20 H 1.48501 * 109.47199 * 239.99768 * 17 15 13 21 21 N 1.40074 * 108.13668 * 359.76060 * 11 10 9 22 22 C 1.31620 * 108.10939 * 0.02562 * 21 11 10 23 23 C 1.48421 * 126.03821 * 179.97438 * 22 21 11 24 24 C 1.39318 * 120.11935 * 317.53624 * 23 22 21 25 25 C 1.38024 * 119.88239 * 179.97438 * 24 23 22 26 26 C 1.38323 * 120.11710 * 359.97438 * 25 24 23 27 27 C 1.38319 * 120.24055 * 0.02562 * 26 25 24 28 28 C 1.38020 * 120.12156 * 359.97438 * 27 26 25 29 29 H 4.40885 * 5.52135 * 179.97438 * 4 1 2 30 30 H 1.09005 * 109.47405 * 215.61022 * 3 2 1 31 31 H 1.09003 * 109.47117 * 95.60956 * 3 2 1 32 32 H 1.09003 * 109.47465 * 320.36345 * 5 4 3 33 33 H 1.09004 * 109.47097 * 80.37025 * 5 4 3 34 34 H 1.08995 * 109.46929 * 43.54867 * 8 4 3 35 35 H 1.09004 * 109.46825 * 283.55653 * 8 4 3 36 36 H 1.08007 * 126.00711 * 359.97438 * 10 9 8 37 37 H 1.09002 * 109.46633 * 244.99956 * 12 11 10 38 38 H 1.08999 * 109.46441 * 4.99579 * 12 11 10 39 39 H 0.97003 * 119.99670 * 179.97438 * 16 15 13 40 40 H 1.08004 * 120.06267 * 359.96291 * 24 23 22 41 41 H 1.07995 * 119.94046 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.87811 * 179.74342 * 26 25 24 43 43 H 1.07995 * 119.93951 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.06432 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2605 0.5719 5 6 2.7874 -2.3992 -0.2880 6 6 2.8385 -3.6422 0.4991 7 7 2.8757 -4.6022 1.1065 8 6 4.5851 -1.2035 0.8079 9 6 4.9859 -2.3151 1.7432 10 6 5.6492 -3.4413 1.4022 11 7 5.8122 -4.1833 2.5186 12 6 6.4773 -5.4864 2.5953 13 6 7.5742 -5.4306 3.6271 14 1 7.7579 -4.5157 4.1710 15 6 8.3440 -6.5470 3.8760 16 7 8.1206 -7.6608 3.2133 17 14 9.7042 -6.4775 5.1544 18 1 9.7503 -5.1203 5.7550 19 1 9.4364 -7.4797 6.2171 20 1 11.0070 -6.7778 4.5079 21 7 5.2345 -3.4910 3.5905 22 6 4.7375 -2.3631 3.1288 23 6 4.0347 -1.3273 3.9264 24 6 3.1030 -1.7014 4.8923 25 6 2.4528 -0.7341 5.6315 26 6 2.7251 0.6047 5.4152 27 6 3.6492 0.9817 4.4575 28 6 4.3052 0.0227 3.7126 29 1 -1.0497 -0.0003 0.0003 30 1 3.0090 0.8363 0.5984 31 1 3.0093 0.1013 -1.0228 32 1 1.7811 -2.2609 -0.6836 33 1 3.4968 -2.4623 -1.1131 34 1 4.8431 -0.2429 1.2535 35 1 5.1123 -1.3179 -0.1393 36 1 5.9858 -3.7043 0.4102 37 1 5.7512 -6.2488 2.8779 38 1 6.9045 -5.7339 1.6236 39 1 8.6624 -8.4462 3.3882 40 1 2.8898 -2.7464 5.0622 41 1 1.7307 -1.0230 6.3808 42 1 2.2110 1.3585 5.9929 43 1 3.8578 2.0284 4.2923 44 1 5.0269 0.3180 2.9654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897163371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:00 Heat of formation + Delta-G solvation = 178.349395 kcal Electronic energy + Delta-G solvation = -27888.480278 eV Core-core repulsion = 24194.787936 eV Total energy + Delta-G solvation = -3693.692342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.149 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.09466 -39.64480 -39.07679 -36.89857 -35.79395 -34.17401 -33.65642 -32.02979 -31.69554 -31.20688 -29.56542 -29.05863 -27.16284 -25.35363 -24.08920 -23.40352 -22.84642 -21.32772 -20.56207 -18.98270 -18.72767 -18.65867 -17.86329 -17.31547 -16.91077 -16.47729 -16.17159 -15.84816 -15.71151 -15.49581 -15.18060 -14.73377 -14.65263 -14.31921 -14.29654 -14.12750 -13.99922 -13.79934 -13.62885 -13.36470 -13.31461 -13.22580 -12.90497 -12.81654 -12.63133 -12.38083 -12.31840 -11.99217 -11.88382 -11.68836 -11.29588 -11.20501 -10.91330 -10.80495 -10.40370 -9.73455 -9.48783 -9.27626 -8.96826 -8.39610 -6.55652 0.34374 0.61133 1.21863 1.30301 1.32638 1.45810 1.63795 1.90169 2.02927 2.11572 2.13904 2.17865 2.29239 2.90701 3.06735 3.23266 3.42135 3.72016 3.73611 3.93014 4.12429 4.20976 4.24395 4.34706 4.37824 4.40882 4.50284 4.61344 4.67541 4.74691 4.78501 4.83326 4.85625 4.89161 5.10651 5.15972 5.22366 5.27724 5.30336 5.50012 5.56012 5.69433 5.72091 5.83153 5.94360 6.02640 6.12579 6.20363 6.30654 6.59050 6.86997 6.90510 7.08603 7.15055 8.68208 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.003774 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.374290 B = 7417.863336 C = 8893.195315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.200 4.200 3 C 0.170 3.830 4 N -0.546 5.546 5 C 0.152 3.848 6 C 0.231 3.769 7 N -0.497 5.497 8 C 0.141 3.859 9 C -0.232 4.232 10 C 0.046 3.954 11 N -0.341 5.341 12 C 0.281 3.719 13 C -0.545 4.545 14 H 0.052 0.948 15 C 0.016 3.984 16 N -0.923 5.923 17 Si 0.976 3.024 18 H -0.273 1.273 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.330 5.330 22 C 0.098 3.902 23 C -0.005 4.005 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.111 4.111 28 C -0.095 4.095 29 H 0.232 0.768 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.181 0.819 37 H 0.000 1.000 38 H 0.047 0.953 39 H 0.273 0.727 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.026 24.179 -9.857 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.200 4.200 3 C 0.045 3.955 4 N -0.271 5.271 5 C 0.022 3.978 6 C -0.087 4.087 7 N -0.176 5.176 8 C 0.014 3.986 9 C -0.244 4.244 10 C -0.102 4.102 11 N -0.119 5.119 12 C 0.161 3.839 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.800 3.200 18 H -0.198 1.198 19 H -0.200 1.200 20 H -0.188 1.188 21 N -0.153 5.153 22 C -0.065 4.065 23 C -0.006 4.006 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.129 4.129 28 C -0.115 4.115 29 H 0.248 0.752 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.198 0.802 37 H 0.018 0.982 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.178 0.822 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.838 21.562 -7.520 25.722 hybrid contribution 0.614 -0.696 -0.639 1.127 sum -11.224 20.866 -8.160 25.059 Atomic orbital electron populations 1.25547 0.96898 0.99010 1.01154 1.23326 0.95049 1.01368 1.00274 1.19160 0.84103 0.91032 1.01199 1.61512 1.15432 1.02247 1.47930 1.19848 1.05789 0.80977 0.91212 1.29843 0.91331 0.94544 0.93006 1.81351 1.10839 1.15685 1.09675 1.20520 0.85293 0.95899 0.96843 1.19974 1.11059 1.00001 0.93416 1.22717 1.01241 0.93034 0.93245 1.48838 1.41457 1.16874 1.04776 1.19062 0.90673 0.75906 0.98213 1.21398 1.16252 0.98374 1.22301 0.92990 1.25835 1.00013 0.94229 0.98389 1.70032 1.41236 1.02462 1.42420 0.85237 0.78334 0.78167 0.78293 1.19804 1.20009 1.18821 1.77578 1.17095 1.07644 1.12990 1.20995 0.98692 0.93073 0.93789 1.17913 0.95724 0.91913 0.95094 1.21126 0.97790 0.98732 0.96921 1.21216 1.00037 0.93578 0.99558 1.21510 0.98258 0.95406 0.98470 1.21416 0.95808 1.00417 0.95223 1.21274 0.99850 0.90151 1.00179 0.75168 0.86437 0.88560 0.85288 0.86388 0.87562 0.90140 0.80226 0.98164 0.93536 0.91808 0.89976 0.85024 0.83096 0.82197 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.92 19.25 74.32 1.43 -1.49 16 2 C -0.20 -2.88 12.23 31.12 0.38 -2.50 16 3 C 0.17 1.72 5.45 84.50 0.46 2.18 16 4 N -0.55 -9.29 4.42 -923.04 -4.08 -13.38 16 5 C 0.15 2.54 5.34 84.50 0.45 3.00 16 6 C 0.23 7.01 12.59 89.44 1.13 8.13 16 7 N -0.50 -20.38 17.97 20.02 0.36 -20.02 16 8 C 0.14 2.58 4.94 85.56 0.42 3.00 16 9 C -0.23 -7.45 3.87 -19.95 -0.08 -7.52 16 10 C 0.05 1.77 9.50 83.47 0.79 2.57 16 11 N -0.34 -16.92 3.67 -351.91 -1.29 -18.21 16 12 C 0.28 16.03 6.26 85.63 0.54 16.57 16 13 C -0.55 -32.91 9.23 25.60 0.24 -32.68 16 14 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 15 C 0.02 0.90 5.46 84.66 0.46 1.37 16 16 N -0.92 -55.58 13.29 21.45 0.28 -55.30 16 17 Si 0.98 45.97 29.54 68.60 2.03 47.99 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 21 N -0.33 -16.71 12.44 -48.16 -0.60 -17.31 16 22 C 0.10 3.93 6.67 42.53 0.28 4.21 16 23 C 0.00 -0.15 5.74 -20.04 -0.12 -0.27 16 24 C -0.13 -4.37 9.78 22.48 0.22 -4.15 16 25 C -0.13 -3.29 10.03 22.24 0.22 -3.07 16 26 C -0.12 -2.34 10.04 22.31 0.22 -2.12 16 27 C -0.11 -2.05 10.03 22.24 0.22 -1.83 16 28 C -0.10 -2.28 8.91 22.48 0.20 -2.08 16 29 H 0.23 1.97 7.80 -4.43 -0.03 1.93 16 30 H 0.12 0.90 7.86 -2.38 -0.02 0.88 16 31 H 0.10 0.39 8.12 -2.39 -0.02 0.37 16 32 H 0.13 1.70 6.84 -2.39 -0.02 1.68 16 33 H 0.12 1.14 7.76 -2.39 -0.02 1.13 16 34 H 0.11 1.52 5.44 -2.39 -0.01 1.51 16 35 H 0.08 0.98 7.78 -2.38 -0.02 0.97 16 36 H 0.18 5.68 8.06 -2.91 -0.02 5.66 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.05 2.62 8.07 -2.39 -0.02 2.60 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.08 3.35 8.06 -2.91 -0.02 3.32 16 41 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.14 2.72 6.20 -2.91 -0.02 2.70 16 Total: -1.00 -86.11 388.41 5.19 -80.91 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.01 Total: 11.99 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 7.48 Total: -16.69 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -5.33 Total: -124.21 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -86.11 5.19 -80.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.263 kcal (2) G-P(sol) polarization free energy of solvation -86.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds