Wall clock time and date at job start Tue Mar 31 2020 17:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47155 * 2 1 4 4 N 1.46501 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.34775 * 119.99863 * 180.02562 * 4 3 2 6 6 S 1.71199 * 120.00234 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99639 * 180.02562 * 5 4 3 8 8 N 1.40092 * 120.00267 * 0.02562 * 7 5 4 9 9 C 1.29800 * 119.99942 * 179.97438 * 8 7 5 10 10 C 1.47411 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.39759 * 120.08238 * 180.02562 * 10 9 8 12 12 C 1.37751 * 119.91668 * 180.02562 * 11 10 9 13 13 C 1.39076 * 120.08409 * 0.02562 * 12 11 10 14 14 N 1.39500 * 119.91905 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.46506 * 119.99781 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46928 * 90.00109 * 16 14 13 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00518 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47000 * 60.00482 * 21 19 17 23 23 H 1.48506 * 109.47330 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47185 * 300.00291 * 21 19 17 25 25 C 1.39085 * 120.16307 * 0.26587 * 13 12 11 26 26 C 1.37760 * 120.07921 * 359.45702 * 25 13 12 27 27 H 1.08999 * 109.47549 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47334 * 300.00482 * 1 2 3 29 29 H 1.09004 * 109.46696 * 60.00032 * 1 2 3 30 30 H 1.08999 * 109.47334 * 239.99518 * 2 1 3 31 31 H 1.09001 * 109.47016 * 119.99545 * 2 1 3 32 32 H 1.08994 * 109.47393 * 60.00027 * 3 2 1 33 33 H 1.08996 * 109.46784 * 299.99207 * 3 2 1 34 34 H 0.97009 * 120.00066 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99483 * 179.97438 * 7 5 4 36 36 H 1.08002 * 120.00335 * 359.97438 * 9 8 7 37 37 H 1.08003 * 120.03859 * 0.02562 * 11 10 9 38 38 H 1.08007 * 119.95463 * 179.97438 * 12 11 10 39 39 H 1.08999 * 109.46532 * 269.99882 * 15 14 13 40 40 H 1.09000 * 109.46877 * 29.99907 * 15 14 13 41 41 H 1.09000 * 109.47251 * 150.00012 * 15 14 13 42 42 H 1.09004 * 109.47073 * 209.99937 * 16 14 13 43 43 H 1.09000 * 109.47212 * 330.00019 * 16 14 13 44 44 H 0.96992 * 120.00316 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.96186 * 179.70280 * 25 13 12 46 46 H 1.07992 * 120.04033 * 180.24957 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0012 6 16 3.3229 4.0923 0.0007 7 7 5.5267 2.6096 0.0013 8 7 6.2271 1.3963 0.0001 9 6 7.5251 1.3963 -0.0003 10 6 8.2622 0.1197 -0.0010 11 6 9.6598 0.1177 -0.0009 12 6 10.3451 -1.0772 -0.0020 13 6 9.6480 -2.2807 -0.0038 14 7 10.3455 -3.4888 -0.0055 15 6 11.8105 -3.4888 -0.0060 16 6 9.6129 -4.7575 -0.0067 17 6 9.3613 -5.1908 -1.4280 18 1 9.7123 -4.5822 -2.2482 19 6 8.6838 -6.3647 -1.6811 20 7 8.2568 -7.1060 -0.6823 21 14 8.3713 -6.9014 -3.4428 22 1 9.6684 -7.0775 -4.1441 23 1 7.6288 -8.1876 -3.4441 24 1 7.5677 -5.8658 -4.1407 25 6 8.2572 -2.2827 -0.0099 26 6 7.5650 -1.0916 -0.0031 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.9900 0.6024 0.0006 35 1 6.0117 3.4496 0.0014 36 1 8.0652 2.3316 -0.0002 37 1 10.2017 1.0519 0.0000 38 1 11.4251 -1.0795 -0.0024 39 1 12.1734 -3.4876 -1.0338 40 1 12.1740 -2.5994 0.5088 41 1 12.1740 -4.3794 0.5067 42 1 10.2022 -5.5178 0.5060 43 1 8.6607 -4.6278 0.5076 44 1 7.7799 -7.9316 -0.8604 45 1 7.7192 -3.2190 -0.0161 46 1 6.4850 -1.0939 -0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916358273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:46 Heat of formation + Delta-G solvation = 78.021880 kcal Electronic energy + Delta-G solvation = -24995.061657 eV Core-core repulsion = 21432.462739 eV Total energy + Delta-G solvation = -3562.598918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -39.50932 -39.08979 -37.12965 -35.95452 -34.10163 -32.90443 -32.10652 -30.84770 -29.37363 -28.02093 -26.56996 -25.66409 -24.14290 -22.93263 -22.20949 -22.07935 -21.26994 -19.97470 -18.59406 -18.00733 -16.90314 -16.66368 -16.14724 -16.04556 -15.49430 -15.14401 -14.90079 -14.68888 -14.40859 -14.09776 -13.93343 -13.37327 -13.30994 -13.24340 -13.02617 -12.46194 -12.33030 -12.28976 -11.79754 -11.65284 -11.59792 -11.50997 -11.47144 -11.41133 -11.10940 -11.01693 -10.86690 -10.63913 -10.40380 -10.15167 -10.00501 -9.51021 -8.79870 -8.67356 -8.63101 -7.98010 -7.77506 -6.71452 -6.20613 -4.34005 0.71684 1.52736 1.57907 1.82456 2.50270 2.61574 2.79794 3.17927 3.23392 3.25840 3.82824 4.24566 4.29240 4.44969 4.50230 4.65010 4.80433 4.91104 5.06407 5.18918 5.21302 5.28276 5.31237 5.40240 5.46890 5.55793 5.70004 5.71370 5.78135 5.83340 5.87135 5.97461 6.02018 6.04432 6.11802 6.29273 6.39353 6.63522 6.68950 6.80257 6.94316 6.98057 7.10442 7.21324 7.63476 7.72060 7.91916 7.98153 8.13453 8.73246 9.33593 10.80268 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.002595 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.368713 B =10789.195945 C =13032.678067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.119 3.881 4 N -0.664 5.664 5 C 0.598 3.402 6 S -0.653 6.653 7 N -0.540 5.540 8 N -0.321 5.321 9 C 0.187 3.813 10 C -0.170 4.170 11 C -0.028 4.028 12 C -0.228 4.228 13 C 0.267 3.733 14 N -0.601 5.601 15 C 0.093 3.907 16 C 0.244 3.756 17 C -0.537 4.537 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.197 4.197 26 C -0.021 4.021 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.413 0.587 35 H 0.411 0.589 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.266 0.734 45 H 0.139 0.861 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 12.453 3.162 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.005 4.005 4 N -0.292 5.292 5 C 0.236 3.764 6 S -0.529 6.529 7 N -0.262 5.262 8 N -0.128 5.128 9 C -0.020 4.020 10 C -0.177 4.177 11 C -0.050 4.050 12 C -0.251 4.251 13 C 0.155 3.845 14 N -0.303 5.303 15 C -0.051 4.051 16 C 0.125 3.875 17 C -0.576 4.576 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.220 4.220 26 C -0.042 4.042 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.251 0.749 35 H 0.254 0.746 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.156 0.844 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.318 12.337 3.214 13.460 hybrid contribution 1.464 -0.602 -1.060 1.905 sum -2.855 11.735 2.154 12.267 Atomic orbital electron populations 1.21644 0.93925 1.02412 1.02499 1.21800 0.97476 0.95313 1.03285 1.21884 0.76031 0.97834 1.04731 1.45053 1.08637 1.06691 1.68843 1.21914 0.82512 0.92140 0.79831 1.93572 1.67448 1.15980 1.75878 1.46165 1.03477 1.06359 1.70184 1.74699 1.10711 1.06076 1.21355 1.24475 0.89782 0.98150 0.89583 1.17831 0.92358 0.89880 1.17599 1.20752 0.92154 0.97294 0.94752 1.20517 0.99506 0.90993 1.14121 1.18202 0.91649 0.86123 0.88506 1.47341 1.04981 1.04971 1.72970 1.21593 0.80906 1.01545 1.01025 1.19435 0.92239 0.78404 0.97419 1.21462 1.37048 1.06739 0.92313 0.92211 1.24949 0.95212 0.96160 0.97560 1.69903 1.37919 1.14348 1.30964 0.86562 0.78540 0.77977 0.84442 1.20155 1.21074 1.20024 1.20903 0.92540 0.99110 1.09431 1.20969 0.99250 0.90804 0.93163 0.91924 0.92165 0.92162 0.90988 0.91021 0.89470 0.89466 0.74857 0.74553 0.86599 0.86335 0.85996 0.93432 0.92365 0.91557 0.94785 0.94320 0.92393 0.84377 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.14 -1.03 6.05 -26.73 -0.16 -1.19 16 3 C 0.12 1.10 5.13 -4.04 -0.02 1.07 16 4 N -0.66 -7.12 5.52 -62.03 -0.34 -7.46 16 5 C 0.60 7.57 7.97 -86.92 -0.69 6.87 16 6 S -0.65 -10.30 29.32 -107.50 -3.15 -13.45 16 7 N -0.54 -6.03 6.26 29.96 0.19 -5.84 16 8 N -0.32 -3.64 9.46 32.15 0.30 -3.34 16 9 C 0.19 1.93 10.75 -14.68 -0.16 1.77 16 10 C -0.17 -2.13 5.87 -105.02 -0.62 -2.74 16 11 C -0.03 -0.33 9.78 -39.19 -0.38 -0.71 16 12 C -0.23 -3.16 9.19 -39.45 -0.36 -3.52 16 13 C 0.27 4.57 6.56 -83.74 -0.55 4.02 16 14 N -0.60 -11.20 2.99 -180.94 -0.54 -11.74 16 15 C 0.09 1.38 10.23 59.85 0.61 2.00 16 16 C 0.24 5.54 4.94 -5.19 -0.03 5.52 16 17 C -0.54 -13.57 9.39 -34.44 -0.32 -13.90 16 18 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -24.15 13.29 55.43 0.74 -23.42 16 21 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.20 -3.41 9.18 -39.44 -0.36 -3.78 16 26 C -0.02 -0.30 9.57 -39.19 -0.37 -0.67 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.86 7.99 -51.93 -0.41 0.44 16 33 H 0.09 0.87 7.99 -51.93 -0.42 0.46 16 34 H 0.41 4.20 7.51 -40.82 -0.31 3.90 16 35 H 0.41 3.98 8.63 -182.60 -1.58 2.41 16 36 H 0.12 0.83 8.02 -52.49 -0.42 0.41 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.12 1.46 6.12 -52.48 -0.32 1.14 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.70 6.18 -51.93 -0.32 0.37 16 41 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 42 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 43 H 0.04 0.93 6.19 -51.93 -0.32 0.60 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.14 2.69 6.13 -52.49 -0.32 2.37 16 46 H 0.12 1.63 7.55 -52.49 -0.40 1.23 16 LS Contribution 398.79 15.07 6.01 6.01 Total: -1.00 -29.85 398.79 -13.10 -42.95 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.14 Total: 5.38 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.15 Total: -4.26 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.35 Total: -51.80 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -3.15 Total: -13.45 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.85 -13.10 -42.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916358273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.973 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds