Wall clock time and date at job start Tue Mar 31 2020 17:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47155 * 2 1 4 4 N 1.46501 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.34775 * 119.99863 * 180.02562 * 4 3 2 6 6 S 1.71199 * 120.00234 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99639 * 180.02562 * 5 4 3 8 8 N 1.40092 * 120.00267 * 0.02562 * 7 5 4 9 9 C 1.29800 * 119.99942 * 179.97438 * 8 7 5 10 10 C 1.47411 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.39759 * 120.08238 * 180.02562 * 10 9 8 12 12 C 1.37751 * 119.91668 * 180.02562 * 11 10 9 13 13 C 1.39076 * 120.08409 * 0.02562 * 12 11 10 14 14 N 1.39500 * 119.91905 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.46506 * 119.99781 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46928 * 90.00109 * 16 14 13 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00518 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47000 * 60.00482 * 21 19 17 23 23 H 1.48506 * 109.47330 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47185 * 300.00291 * 21 19 17 25 25 C 1.39085 * 120.16307 * 0.26587 * 13 12 11 26 26 C 1.37760 * 120.07921 * 359.45702 * 25 13 12 27 27 H 1.08999 * 109.47549 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47334 * 300.00482 * 1 2 3 29 29 H 1.09004 * 109.46696 * 60.00032 * 1 2 3 30 30 H 1.08999 * 109.47334 * 239.99518 * 2 1 3 31 31 H 1.09001 * 109.47016 * 119.99545 * 2 1 3 32 32 H 1.08994 * 109.47393 * 60.00027 * 3 2 1 33 33 H 1.08996 * 109.46784 * 299.99207 * 3 2 1 34 34 H 0.97009 * 120.00066 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99483 * 179.97438 * 7 5 4 36 36 H 1.08002 * 120.00335 * 359.97438 * 9 8 7 37 37 H 1.08003 * 120.03859 * 0.02562 * 11 10 9 38 38 H 1.08007 * 119.95463 * 179.97438 * 12 11 10 39 39 H 1.08999 * 109.46532 * 269.99882 * 15 14 13 40 40 H 1.09000 * 109.46877 * 29.99907 * 15 14 13 41 41 H 1.09000 * 109.47251 * 150.00012 * 15 14 13 42 42 H 1.09004 * 109.47073 * 209.99937 * 16 14 13 43 43 H 1.09000 * 109.47212 * 330.00019 * 16 14 13 44 44 H 0.96992 * 120.00316 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.96186 * 179.70280 * 25 13 12 46 46 H 1.07992 * 120.04033 * 180.24957 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0012 6 16 3.3229 4.0923 0.0007 7 7 5.5267 2.6096 0.0013 8 7 6.2271 1.3963 0.0001 9 6 7.5251 1.3963 -0.0003 10 6 8.2622 0.1197 -0.0010 11 6 9.6598 0.1177 -0.0009 12 6 10.3451 -1.0772 -0.0020 13 6 9.6480 -2.2807 -0.0038 14 7 10.3455 -3.4888 -0.0055 15 6 11.8105 -3.4888 -0.0060 16 6 9.6129 -4.7575 -0.0067 17 6 9.3613 -5.1908 -1.4280 18 1 9.7123 -4.5822 -2.2482 19 6 8.6838 -6.3647 -1.6811 20 7 8.2568 -7.1060 -0.6823 21 14 8.3713 -6.9014 -3.4428 22 1 9.6684 -7.0775 -4.1441 23 1 7.6288 -8.1876 -3.4441 24 1 7.5677 -5.8658 -4.1407 25 6 8.2572 -2.2827 -0.0099 26 6 7.5650 -1.0916 -0.0031 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.9900 0.6024 0.0006 35 1 6.0117 3.4496 0.0014 36 1 8.0652 2.3316 -0.0002 37 1 10.2017 1.0519 0.0000 38 1 11.4251 -1.0795 -0.0024 39 1 12.1734 -3.4876 -1.0338 40 1 12.1740 -2.5994 0.5088 41 1 12.1740 -4.3794 0.5067 42 1 10.2022 -5.5178 0.5060 43 1 8.6607 -4.6278 0.5076 44 1 7.7799 -7.9316 -0.8604 45 1 7.7192 -3.2190 -0.0161 46 1 6.4850 -1.0939 -0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916358273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:31 Heat of formation + Delta-G solvation = 62.714680 kcal Electronic energy + Delta-G solvation = -24995.725427 eV Core-core repulsion = 21432.462739 eV Total energy + Delta-G solvation = -3563.262688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 5.75 seconds Orbital eigenvalues (eV) -40.57699 -40.13773 -38.10965 -37.12940 -35.11186 -34.60730 -33.02370 -32.01452 -30.58637 -29.56307 -27.40987 -26.89926 -25.48578 -24.21387 -23.31916 -22.81343 -22.38644 -21.12169 -19.55214 -18.93478 -18.65657 -18.09889 -17.18982 -16.82310 -16.80617 -16.33413 -15.96487 -15.92091 -15.53259 -15.34342 -15.19138 -14.49524 -14.30333 -14.16108 -14.01880 -13.98462 -13.44723 -13.20035 -13.07013 -12.94411 -12.83883 -12.67772 -12.57510 -12.52505 -12.47276 -12.17088 -12.12426 -11.84505 -11.68119 -11.62646 -11.28646 -10.75435 -10.64182 -9.88133 -9.76933 -9.16009 -8.99976 -8.36371 -7.83685 -6.38613 -0.26462 0.48913 0.51493 0.69842 1.37705 1.38645 1.46572 1.53567 1.61719 1.89774 2.32387 2.55854 3.05620 3.14074 3.69276 3.75700 3.93275 3.99661 4.13321 4.23876 4.26800 4.36370 4.52819 4.60878 4.62089 4.66560 4.70206 4.74919 4.82867 4.89301 4.97787 5.03618 5.09654 5.11890 5.15639 5.17651 5.28406 5.32630 5.47515 5.54608 5.60698 5.66657 5.74911 6.03953 6.05405 6.08710 6.42390 6.78249 6.82974 6.85696 7.33100 8.81425 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.002595 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.368713 B =10789.195945 C =13032.678067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.121 3.879 4 N -0.654 5.654 5 C 0.608 3.392 6 S -0.717 6.717 7 N -0.528 5.528 8 N -0.334 5.334 9 C 0.197 3.803 10 C -0.160 4.160 11 C -0.013 4.013 12 C -0.223 4.223 13 C 0.238 3.762 14 N -0.620 5.620 15 C 0.093 3.907 16 C 0.262 3.738 17 C -0.542 4.542 18 H 0.051 0.949 19 C 0.015 3.985 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.273 1.273 25 C -0.226 4.226 26 C -0.026 4.026 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.417 0.583 35 H 0.420 0.580 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.013 0.987 43 H 0.015 0.985 44 H 0.267 0.733 45 H 0.099 0.901 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 14.614 2.572 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.002 4.002 4 N -0.281 5.281 5 C 0.243 3.757 6 S -0.593 6.593 7 N -0.250 5.250 8 N -0.142 5.142 9 C -0.011 4.011 10 C -0.166 4.166 11 C -0.034 4.034 12 C -0.245 4.245 13 C 0.129 3.871 14 N -0.325 5.325 15 C -0.050 4.050 16 C 0.140 3.860 17 C -0.580 4.580 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.565 5.565 21 Si 0.782 3.218 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.249 4.249 26 C -0.047 4.047 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.257 0.743 35 H 0.265 0.735 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.070 14.525 2.624 15.076 hybrid contribution 1.067 -1.178 -0.836 1.796 sum -2.003 13.347 1.788 13.614 Atomic orbital electron populations 1.21651 0.93087 1.02906 1.02767 1.21763 0.98115 0.93853 1.03419 1.21942 0.75172 0.99013 1.04117 1.45159 1.09278 1.06289 1.67332 1.21519 0.82905 0.91441 0.79828 1.93697 1.68723 1.18231 1.78693 1.45990 1.02940 1.06854 1.69228 1.74723 1.11789 1.06013 1.21641 1.24651 0.89632 0.98714 0.88071 1.18065 0.93153 0.89800 1.15595 1.21242 0.91733 0.98438 0.91976 1.20824 1.00732 0.90140 1.12852 1.18502 0.91637 0.86773 0.90150 1.47126 1.06126 1.03991 1.75233 1.21723 0.78850 1.03101 1.01309 1.18881 0.91370 0.80217 0.95521 1.21717 1.36462 1.06527 0.93337 0.93092 1.25718 0.95155 0.96380 1.01164 1.70010 1.38883 1.14784 1.32796 0.85625 0.78554 0.77550 0.80078 1.19429 1.20635 1.19845 1.20737 0.93234 0.98674 1.12275 1.21059 0.99580 0.90964 0.93075 0.91289 0.91869 0.91995 0.90936 0.90749 0.89989 0.90120 0.74288 0.73537 0.82077 0.81361 0.83653 0.93693 0.88900 0.91948 0.96920 0.96680 0.92378 0.88294 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.83 6.05 30.59 0.19 -1.65 16 3 C 0.12 2.15 5.13 86.38 0.44 2.59 16 4 N -0.65 -13.23 5.52 -350.17 -1.93 -15.17 16 5 C 0.61 14.53 7.97 179.05 1.43 15.96 16 6 S -0.72 -22.35 29.32 -56.49 -1.66 -24.01 16 7 N -0.53 -10.38 6.26 -59.11 -0.37 -10.75 16 8 N -0.33 -6.51 9.46 -52.20 -0.49 -7.00 16 9 C 0.20 3.13 10.75 87.41 0.94 4.07 16 10 C -0.16 -3.42 5.87 -20.12 -0.12 -3.54 16 11 C -0.01 -0.24 9.78 22.52 0.22 -0.02 16 12 C -0.22 -5.45 9.19 22.36 0.21 -5.25 16 13 C 0.24 8.11 6.56 38.33 0.25 8.36 16 14 N -0.62 -23.65 2.99 -726.38 -2.17 -25.82 16 15 C 0.09 2.70 10.23 127.77 1.31 4.01 16 16 C 0.26 12.59 4.94 85.63 0.42 13.01 16 17 C -0.54 -28.47 9.39 25.60 0.24 -28.23 16 18 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 19 C 0.02 0.82 5.46 84.65 0.46 1.29 16 20 N -0.93 -51.90 13.29 21.45 0.28 -51.62 16 21 Si 0.96 42.05 29.54 68.60 2.03 44.08 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C -0.23 -8.12 9.18 22.36 0.21 -7.91 16 26 C -0.03 -0.73 9.57 22.53 0.22 -0.51 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.59 7.99 -2.39 -0.02 1.57 16 33 H 0.08 1.59 7.99 -2.39 -0.02 1.57 16 34 H 0.42 7.90 7.51 -92.70 -0.70 7.20 16 35 H 0.42 6.82 8.63 -213.32 -1.84 4.98 16 36 H 0.16 1.22 8.02 -2.91 -0.02 1.19 16 37 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.15 2.84 6.12 -2.91 -0.02 2.83 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.99 6.18 -2.39 -0.01 1.98 16 41 H 0.06 1.81 7.89 -2.39 -0.02 1.79 16 42 H 0.01 0.65 7.89 -2.38 -0.02 0.64 16 43 H 0.02 0.79 6.19 -2.39 -0.01 0.78 16 44 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.10 4.25 6.13 -2.91 -0.02 4.23 16 46 H 0.12 3.31 7.55 -2.91 -0.02 3.29 16 Total: -1.00 -68.59 398.79 1.27 -67.32 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -1.54 Total: 21.81 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 7.12 Total: 1.17 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.68 Total: -110.36 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -22.35 SS G_CDS: -1.66 Total: -24.01 kcal Total: -68.59 1.27 -67.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916358273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.034 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.76 seconds