Wall clock time and date at job start Tue Mar 31 2020 23:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00070 * 2 1 4 4 H 1.48507 * 109.46886 * 269.99896 * 3 2 1 5 5 H 1.48504 * 109.47213 * 29.99445 * 3 2 1 6 6 H 1.48493 * 109.47287 * 149.99574 * 3 2 1 7 7 C 1.37883 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99762 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99772 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47205 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47389 * 54.99887 * 10 9 7 12 12 N 1.46505 * 109.47003 * 295.00314 * 10 9 7 13 13 C 1.34770 * 120.00147 * 154.99807 * 12 10 9 14 14 O 1.21584 * 120.00180 * 355.01785 * 13 12 10 15 15 N 1.34780 * 119.99866 * 175.01207 * 13 12 10 16 16 C 1.47144 * 120.98371 * 4.99101 * 15 13 12 17 17 C 1.53714 * 108.16665 * 129.42974 * 16 15 13 18 18 O 1.42961 * 109.14352 * 52.53735 * 17 16 15 19 19 C 1.42968 * 114.16774 * 297.28964 * 18 17 16 20 20 C 1.47155 * 120.98100 * 185.27281 * 15 13 12 21 21 H 1.09000 * 109.68358 * 110.79245 * 20 15 13 22 22 C 1.53003 * 109.68051 * 350.27154 * 20 15 13 23 23 O 1.42896 * 109.47060 * 296.56313 * 22 20 15 24 24 C 1.50698 * 109.47297 * 175.00222 * 10 9 7 25 25 C 1.38228 * 120.00218 * 79.72434 * 24 10 9 26 26 C 1.38237 * 120.00056 * 179.78569 * 25 24 10 27 27 C 1.38233 * 120.00047 * 0.44762 * 26 25 24 28 28 C 1.38235 * 119.99832 * 359.80512 * 27 26 25 29 29 C 1.38235 * 120.00205 * 359.97438 * 28 27 26 30 30 H 0.97000 * 119.99894 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47166 * 60.00273 * 9 7 2 32 32 H 1.09007 * 109.47128 * 300.00159 * 9 7 2 33 33 H 0.97004 * 119.99426 * 334.99221 * 12 10 9 34 34 H 1.09000 * 109.68231 * 249.21462 * 16 15 13 35 35 H 1.09008 * 109.68032 * 9.75954 * 16 15 13 36 36 H 1.09000 * 109.65484 * 292.57467 * 17 16 15 37 37 H 1.08994 * 109.48565 * 172.39877 * 17 16 15 38 38 H 1.08993 * 109.51363 * 302.65700 * 19 18 17 39 39 H 1.08996 * 109.51407 * 182.50353 * 19 18 17 40 40 H 1.09000 * 109.46989 * 56.56373 * 22 20 15 41 41 H 1.09007 * 109.46759 * 176.56104 * 22 20 15 42 42 H 0.96705 * 113.99689 * 180.02562 * 23 22 20 43 43 H 1.08004 * 119.99880 * 359.97438 * 25 24 10 44 44 H 1.08001 * 119.99908 * 180.26940 * 26 25 24 45 45 H 1.07996 * 120.00552 * 179.83539 * 27 26 25 46 46 H 1.08001 * 120.00554 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00317 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 1 3.5873 -3.1755 -0.8411 12 7 3.6334 -3.2919 1.2525 13 6 3.5066 -4.6327 1.3000 14 8 3.6251 -5.2909 0.2846 15 7 3.2484 -5.2441 2.4730 16 6 2.9932 -4.4635 3.6940 17 6 1.6965 -4.9851 4.3340 18 8 1.7905 -6.4024 4.4953 19 6 1.9170 -7.1241 3.2676 20 6 3.2194 -6.7120 2.5719 21 1 4.0727 -7.0576 3.1556 22 6 3.2719 -7.3240 1.1706 23 8 2.1046 -6.9424 0.4401 24 6 5.5235 -2.6383 -0.1222 25 6 6.3084 -2.3918 0.9886 26 6 7.6862 -2.3978 0.8765 27 6 8.2789 -2.6412 -0.3484 28 6 7.4939 -2.8827 -1.4603 29 6 6.1162 -2.8812 -1.3473 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.4679 -2.7605 2.0470 34 1 3.8240 -4.5864 4.3887 35 1 2.8801 -3.4097 3.4391 36 1 0.8490 -4.7471 3.6912 37 1 1.5577 -4.5162 5.3081 38 1 1.0703 -6.8940 2.6211 39 1 1.9377 -8.1940 3.4747 40 1 4.1598 -6.9647 0.6503 41 1 3.3120 -8.4105 1.2499 42 1 2.0705 -7.2959 -0.4593 43 1 5.8452 -2.1974 1.9447 44 1 8.2995 -2.2094 1.7452 45 1 9.3553 -2.6433 -0.4366 46 1 7.9569 -3.0733 -2.4172 47 1 5.5029 -3.0702 -2.2159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921582515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:41 Heat of formation + Delta-G solvation = -66.990418 kcal Electronic energy + Delta-G solvation = -30547.014375 eV Core-core repulsion = 26503.081629 eV Total energy + Delta-G solvation = -4043.932746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54387 -39.15644 -38.02822 -36.47828 -35.08627 -34.42879 -32.68285 -31.93114 -30.81605 -30.49465 -29.30185 -27.88095 -25.81937 -24.98161 -22.81880 -22.39542 -21.93417 -21.76128 -19.91861 -19.38748 -17.73201 -17.25359 -17.07425 -16.53162 -16.26088 -15.68783 -15.42527 -15.11659 -14.98007 -14.92888 -14.44998 -14.33804 -14.22407 -13.63552 -13.49952 -13.15493 -13.08500 -12.94695 -12.70573 -12.59049 -12.38948 -11.97779 -11.75844 -11.46545 -11.34534 -11.18181 -11.01942 -10.73769 -10.70222 -10.61128 -10.15499 -10.09078 -9.87125 -9.79401 -9.30965 -8.86791 -8.63789 -8.60545 -8.39242 -8.28281 -8.12260 -6.10037 -4.09557 1.67134 1.69961 2.87651 3.25343 3.33639 3.35537 3.73336 3.79985 4.06637 4.30351 4.38116 4.61804 4.74408 4.97022 5.08928 5.11133 5.16585 5.17882 5.23393 5.25018 5.29841 5.41880 5.44786 5.52936 5.57084 5.75619 5.79348 5.81336 5.83965 6.03188 6.06973 6.12085 6.24265 6.30114 6.44942 6.64573 6.73483 6.75410 6.87853 6.93486 7.06182 7.08125 7.26632 7.30745 7.46268 7.66172 8.06579 8.43724 8.48682 8.97641 9.15748 9.50645 11.02715 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.005253 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.789213 B = 5329.221191 C = 7332.194095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.212 3.788 11 H 0.093 0.907 12 N -0.718 5.718 13 C 0.716 3.284 14 O -0.572 6.572 15 N -0.630 5.630 16 C 0.078 3.922 17 C 0.048 3.952 18 O -0.385 6.385 19 C 0.052 3.948 20 C 0.135 3.865 21 H 0.082 0.918 22 C 0.084 3.916 23 O -0.551 6.551 24 C -0.076 4.076 25 C -0.108 4.108 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.263 0.737 31 H 0.021 0.979 32 H 0.029 0.971 33 H 0.393 0.607 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.372 0.628 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.370 -11.089 6.180 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.095 0.905 9 C -0.051 4.051 10 C 0.107 3.893 11 H 0.111 0.889 12 N -0.373 5.373 13 C 0.418 3.582 14 O -0.451 6.451 15 N -0.370 5.370 16 C -0.045 4.045 17 C -0.030 4.030 18 O -0.303 6.303 19 C -0.025 4.025 20 C 0.031 3.969 21 H 0.100 0.900 22 C 0.006 3.994 23 O -0.355 6.355 24 C -0.078 4.078 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.152 4.152 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.229 0.771 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.218 0.782 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.157 -11.204 6.155 16.967 hybrid contribution 0.432 1.175 -0.282 1.283 sum 11.589 -10.029 5.873 16.413 Atomic orbital electron populations 1.69914 1.06237 1.26857 1.50608 1.24991 0.94670 0.98900 0.94570 0.86877 0.80315 0.83968 0.78699 1.20215 1.21387 1.19036 1.21023 0.88652 0.94689 1.51205 0.90524 1.19869 0.97869 0.89947 0.97440 1.19791 0.87087 0.95890 0.86506 0.88932 1.45237 1.73231 1.04512 1.14273 1.15723 0.77405 0.82282 0.82750 1.90761 1.58381 1.62945 1.32963 1.47139 1.76495 1.05496 1.07883 1.22367 0.98249 0.96709 0.87224 1.23041 0.96680 0.81514 1.01748 1.87898 1.94256 1.18179 1.29969 1.23006 0.97317 0.96279 0.85942 1.21787 0.98448 0.79833 0.96851 0.90028 1.22262 0.92226 0.94319 0.90601 1.86474 1.41761 1.77864 1.29417 1.20668 0.97244 0.96513 0.93332 1.20908 0.93300 0.99894 0.98481 1.21047 0.94833 1.01125 0.97368 1.21005 0.99207 1.01804 0.93205 1.21059 0.93869 1.00866 0.98311 1.21043 0.94580 0.99491 0.97458 0.92689 0.96072 0.95291 0.77112 0.91023 0.88967 0.91990 0.87869 0.91202 0.88432 0.89724 0.95568 0.78161 0.86703 0.86771 0.86829 0.86564 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 20.85 27.47 -169.99 -4.67 16.18 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -13.92 9.39 -34.44 -0.32 -14.25 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.30 3.56 -27.89 -0.10 -0.40 16 10 C 0.21 4.20 2.16 -69.08 -0.15 4.05 16 11 H 0.09 2.05 7.37 -51.93 -0.38 1.67 16 12 N -0.72 -13.09 3.95 -59.81 -0.24 -13.33 16 13 C 0.72 13.10 7.96 -86.92 -0.69 12.41 16 14 O -0.57 -11.54 10.54 -19.15 -0.20 -11.74 16 15 N -0.63 -9.56 3.01 -170.17 -0.51 -10.07 16 16 C 0.08 0.99 6.60 -3.32 -0.02 0.96 16 17 C 0.05 0.59 7.00 37.53 0.26 0.85 16 18 O -0.38 -5.13 10.74 -35.23 -0.38 -5.50 16 19 C 0.05 0.67 6.21 37.31 0.23 0.90 16 20 C 0.14 1.81 3.47 -67.42 -0.23 1.58 16 21 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 22 C 0.08 1.15 5.80 37.16 0.22 1.37 16 23 O -0.55 -8.75 10.45 -59.67 -0.62 -9.37 16 24 C -0.08 -1.34 4.91 -104.63 -0.51 -1.85 16 25 C -0.11 -1.70 9.32 -39.59 -0.37 -2.07 16 26 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 27 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 28 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 29 C -0.11 -1.75 9.67 -39.58 -0.38 -2.13 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 32 H 0.03 0.66 7.57 -51.92 -0.39 0.27 16 33 H 0.39 6.68 6.16 -40.82 -0.25 6.43 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.16 5.77 -51.92 -0.30 0.86 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.04 7.35 -51.93 -0.38 0.66 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.35 5.98 -52.00 -0.31 1.04 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.37 4.79 9.12 45.56 0.42 5.20 16 43 H 0.11 1.71 7.73 -52.48 -0.41 1.30 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 45 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.12 1.90 8.04 -52.49 -0.42 1.48 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -33.08 374.14 -9.77 -42.85 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.20 Total: 14.57 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.37 Total: -3.16 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.03 Total: -49.47 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -1.20 Total: -26.62 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.08 -9.77 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.139 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds