Wall clock time and date at job start Tue Mar 31 2020 23:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00070 * 2 1 4 4 H 1.48507 * 109.46886 * 269.99896 * 3 2 1 5 5 H 1.48504 * 109.47213 * 29.99445 * 3 2 1 6 6 H 1.48493 * 109.47287 * 149.99574 * 3 2 1 7 7 C 1.37883 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99762 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99772 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47205 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47389 * 54.99887 * 10 9 7 12 12 N 1.46505 * 109.47003 * 295.00314 * 10 9 7 13 13 C 1.34770 * 120.00147 * 154.99807 * 12 10 9 14 14 O 1.21584 * 120.00180 * 355.01785 * 13 12 10 15 15 N 1.34780 * 119.99866 * 175.01207 * 13 12 10 16 16 C 1.47144 * 120.98371 * 4.99101 * 15 13 12 17 17 C 1.53714 * 108.16665 * 129.42974 * 16 15 13 18 18 O 1.42961 * 109.14352 * 52.53735 * 17 16 15 19 19 C 1.42968 * 114.16774 * 297.28964 * 18 17 16 20 20 C 1.47155 * 120.98100 * 185.27281 * 15 13 12 21 21 H 1.09000 * 109.68358 * 110.79245 * 20 15 13 22 22 C 1.53003 * 109.68051 * 350.27154 * 20 15 13 23 23 O 1.42896 * 109.47060 * 296.56313 * 22 20 15 24 24 C 1.50698 * 109.47297 * 175.00222 * 10 9 7 25 25 C 1.38228 * 120.00218 * 79.72434 * 24 10 9 26 26 C 1.38237 * 120.00056 * 179.78569 * 25 24 10 27 27 C 1.38233 * 120.00047 * 0.44762 * 26 25 24 28 28 C 1.38235 * 119.99832 * 359.80512 * 27 26 25 29 29 C 1.38235 * 120.00205 * 359.97438 * 28 27 26 30 30 H 0.97000 * 119.99894 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47166 * 60.00273 * 9 7 2 32 32 H 1.09007 * 109.47128 * 300.00159 * 9 7 2 33 33 H 0.97004 * 119.99426 * 334.99221 * 12 10 9 34 34 H 1.09000 * 109.68231 * 249.21462 * 16 15 13 35 35 H 1.09008 * 109.68032 * 9.75954 * 16 15 13 36 36 H 1.09000 * 109.65484 * 292.57467 * 17 16 15 37 37 H 1.08994 * 109.48565 * 172.39877 * 17 16 15 38 38 H 1.08993 * 109.51363 * 302.65700 * 19 18 17 39 39 H 1.08996 * 109.51407 * 182.50353 * 19 18 17 40 40 H 1.09000 * 109.46989 * 56.56373 * 22 20 15 41 41 H 1.09007 * 109.46759 * 176.56104 * 22 20 15 42 42 H 0.96705 * 113.99689 * 180.02562 * 23 22 20 43 43 H 1.08004 * 119.99880 * 359.97438 * 25 24 10 44 44 H 1.08001 * 119.99908 * 180.26940 * 26 25 24 45 45 H 1.07996 * 120.00552 * 179.83539 * 27 26 25 46 46 H 1.08001 * 120.00554 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00317 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 1 3.5873 -3.1755 -0.8411 12 7 3.6334 -3.2919 1.2525 13 6 3.5066 -4.6327 1.3000 14 8 3.6251 -5.2909 0.2846 15 7 3.2484 -5.2441 2.4730 16 6 2.9932 -4.4635 3.6940 17 6 1.6965 -4.9851 4.3340 18 8 1.7905 -6.4024 4.4953 19 6 1.9170 -7.1241 3.2676 20 6 3.2194 -6.7120 2.5719 21 1 4.0727 -7.0576 3.1556 22 6 3.2719 -7.3240 1.1706 23 8 2.1046 -6.9424 0.4401 24 6 5.5235 -2.6383 -0.1222 25 6 6.3084 -2.3918 0.9886 26 6 7.6862 -2.3978 0.8765 27 6 8.2789 -2.6412 -0.3484 28 6 7.4939 -2.8827 -1.4603 29 6 6.1162 -2.8812 -1.3473 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.4679 -2.7605 2.0470 34 1 3.8240 -4.5864 4.3887 35 1 2.8801 -3.4097 3.4391 36 1 0.8490 -4.7471 3.6912 37 1 1.5577 -4.5162 5.3081 38 1 1.0703 -6.8940 2.6211 39 1 1.9377 -8.1940 3.4747 40 1 4.1598 -6.9647 0.6503 41 1 3.3120 -8.4105 1.2499 42 1 2.0705 -7.2959 -0.4593 43 1 5.8452 -2.1974 1.9447 44 1 8.2995 -2.2094 1.7452 45 1 9.3553 -2.6433 -0.4366 46 1 7.9569 -3.0733 -2.4172 47 1 5.5029 -3.0702 -2.2159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921582515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:27 Heat of formation + Delta-G solvation = -89.769828 kcal Electronic energy + Delta-G solvation = -30548.002164 eV Core-core repulsion = 26503.081629 eV Total energy + Delta-G solvation = -4044.920535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.65 seconds Orbital eigenvalues (eV) -41.80608 -40.35019 -39.22072 -37.70153 -36.55990 -35.67313 -34.66040 -33.17747 -32.04468 -31.65207 -30.96170 -29.08370 -26.90002 -26.64155 -23.91977 -23.57063 -23.43685 -23.06127 -21.32846 -20.72865 -19.09606 -18.90009 -18.43766 -17.80779 -17.43662 -16.96537 -16.61727 -16.40806 -16.21749 -16.07864 -16.04696 -15.60264 -15.50794 -15.04283 -14.80250 -14.52504 -14.35934 -14.18458 -14.11459 -13.99804 -13.75700 -13.48464 -13.07108 -12.97214 -12.54648 -12.47416 -12.39987 -12.19534 -11.92894 -11.83364 -11.72750 -11.68295 -11.41689 -11.24520 -11.01969 -10.78437 -10.21933 -9.81139 -9.73735 -9.52317 -9.32250 -8.27667 -6.32494 0.50634 0.56743 1.36738 1.37609 1.48839 1.64215 2.33525 2.35374 2.80367 2.87440 3.03381 3.11453 3.51699 3.70488 3.90670 3.95092 4.02956 4.06234 4.10875 4.21329 4.24602 4.33177 4.37297 4.40066 4.52302 4.57884 4.61206 4.74268 4.76482 4.77455 4.79608 4.96400 5.01312 5.04262 5.15661 5.19010 5.27822 5.53097 5.55764 5.65155 5.65862 5.67881 5.88726 6.02868 6.04411 6.18773 6.27474 6.74734 6.99392 7.09020 7.31383 7.75622 8.88860 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.005253 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.789213 B = 5329.221191 C = 7332.194095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.516 4.516 8 H 0.026 0.974 9 C -0.004 4.004 10 C 0.225 3.775 11 H 0.053 0.947 12 N -0.718 5.718 13 C 0.707 3.293 14 O -0.598 6.598 15 N -0.631 5.631 16 C 0.076 3.924 17 C 0.049 3.951 18 O -0.387 6.387 19 C 0.058 3.942 20 C 0.129 3.871 21 H 0.108 0.892 22 C 0.086 3.914 23 O -0.576 6.576 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.129 4.129 30 H 0.265 0.735 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.397 0.603 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.034 0.966 37 H 0.134 0.866 38 H 0.041 0.959 39 H 0.128 0.872 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.380 0.620 43 H 0.120 0.880 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.142 0.858 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.939 -10.803 7.908 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.165 1.165 7 C -0.554 4.554 8 H 0.045 0.955 9 C -0.041 4.041 10 C 0.120 3.880 11 H 0.071 0.929 12 N -0.373 5.373 13 C 0.409 3.591 14 O -0.478 6.478 15 N -0.370 5.370 16 C -0.047 4.047 17 C -0.029 4.029 18 O -0.305 6.305 19 C -0.020 4.020 20 C 0.025 3.975 21 H 0.125 0.875 22 C 0.008 3.992 23 O -0.382 6.382 24 C -0.100 4.100 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.141 4.141 29 C -0.148 4.148 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.234 0.766 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.152 0.848 38 H 0.059 0.941 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.228 0.772 43 H 0.138 0.862 44 H 0.163 0.837 45 H 0.167 0.833 46 H 0.160 0.840 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.739 -10.944 7.912 19.990 hybrid contribution -0.701 0.956 -0.846 1.456 sum 14.038 -9.988 7.066 18.621 Atomic orbital electron populations 1.70079 1.08329 1.28014 1.52463 1.25914 0.95448 1.03106 0.94160 0.85734 0.79699 0.78580 0.79060 1.19773 1.21049 1.16490 1.21160 0.91068 0.92763 1.50402 0.95513 1.19722 0.94527 0.92151 0.97747 1.19341 0.89140 0.93621 0.85940 0.92851 1.45142 1.73530 1.04814 1.13845 1.15937 0.77549 0.82139 0.83487 1.90754 1.59444 1.63398 1.34247 1.47238 1.75560 1.06588 1.07619 1.22564 0.99387 0.96167 0.86593 1.23114 0.95485 0.81480 1.02779 1.87898 1.94132 1.18440 1.30021 1.23008 0.95771 0.97869 0.85333 1.22081 0.99723 0.78677 0.97024 0.87479 1.22274 0.90363 0.96251 0.90284 1.86443 1.42823 1.78663 1.30295 1.20430 0.95430 0.99308 0.94807 1.21041 0.94400 1.00202 0.97951 1.21419 0.94067 0.99782 0.98865 1.21460 1.00988 0.99664 0.92401 1.21372 0.92737 0.99864 1.00093 1.21158 0.96047 1.00666 0.96898 0.92583 0.94713 0.95282 0.76577 0.88134 0.89481 0.94762 0.84801 0.94094 0.85381 0.92185 0.92042 0.77222 0.86210 0.83688 0.83276 0.83991 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.01 0.62 5.47 84.66 0.46 1.08 16 3 Si 0.95 43.12 27.47 68.60 1.88 45.00 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 7 C -0.52 -29.08 9.39 25.60 0.24 -28.84 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 9 C 0.00 -0.17 3.56 29.85 0.11 -0.06 16 10 C 0.23 9.34 2.16 44.24 0.10 9.43 16 11 H 0.05 2.58 7.37 -2.38 -0.02 2.57 16 12 N -0.72 -27.31 3.95 -461.41 -1.82 -29.13 16 13 C 0.71 26.91 7.96 179.06 1.43 28.34 16 14 O -0.60 -25.52 10.54 19.39 0.20 -25.31 16 15 N -0.63 -19.20 3.01 -810.57 -2.44 -21.64 16 16 C 0.08 1.84 6.60 86.50 0.57 2.42 16 17 C 0.05 1.17 7.00 72.22 0.51 1.68 16 18 O -0.39 -9.72 10.74 -148.98 -1.60 -11.32 16 19 C 0.06 1.42 6.21 72.08 0.45 1.86 16 20 C 0.13 3.32 3.47 44.97 0.16 3.48 16 21 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 22 C 0.09 2.35 5.80 71.98 0.42 2.77 16 23 O -0.58 -19.19 10.45 -125.61 -1.31 -20.50 16 24 C -0.10 -3.46 4.91 -19.87 -0.10 -3.56 16 25 C -0.12 -3.53 9.32 22.27 0.21 -3.32 16 26 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 27 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 28 C -0.12 -3.16 10.05 22.27 0.22 -2.93 16 29 C -0.13 -4.21 9.67 22.27 0.22 -3.99 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 32 H 0.03 1.33 7.57 -2.38 -0.02 1.31 16 33 H 0.40 13.92 6.16 -92.71 -0.57 13.35 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.09 2.19 5.77 -2.38 -0.01 2.18 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.13 2.36 8.14 -2.39 -0.02 2.35 16 38 H 0.04 1.25 7.35 -2.39 -0.02 1.23 16 39 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 1.96 5.98 -3.45 -0.02 1.94 16 41 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.38 10.51 9.12 -74.05 -0.68 9.83 16 43 H 0.12 3.36 7.73 -2.91 -0.02 3.34 16 44 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 46 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 47 H 0.11 3.71 8.04 -2.91 -0.02 3.68 16 Total: -1.00 -75.93 374.14 0.33 -75.60 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -0.31 Total: 43.00 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.43 Total: 2.95 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -3.96 Total: -109.41 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -2.71 Total: -57.14 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Total: -75.93 0.33 -75.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.170 kcal (2) G-P(sol) polarization free energy of solvation -75.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.65 seconds