Wall clock time and date at job start Tue Mar 31 2020 23:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48503 * 109.46755 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46582 * 299.99276 * 3 2 1 6 6 H 1.48494 * 109.47264 * 59.99726 * 3 2 1 7 7 C 1.37875 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00486 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47296 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47291 * 305.00413 * 10 9 7 12 12 N 1.46501 * 109.47104 * 65.00166 * 10 9 7 13 13 C 1.34772 * 120.00235 * 205.00116 * 12 10 9 14 14 O 1.21593 * 120.00047 * 5.13187 * 13 12 10 15 15 N 1.34776 * 120.00145 * 185.13132 * 13 12 10 16 16 C 1.47263 * 120.96087 * 5.21759 * 15 13 12 17 17 C 1.53292 * 108.32563 * 129.46551 * 16 15 13 18 18 O 1.42967 * 109.26243 * 52.29146 * 17 16 15 19 19 C 1.42969 * 114.16395 * 297.39210 * 18 17 16 20 20 C 1.47157 * 120.97918 * 185.19827 * 15 13 12 21 21 H 1.08996 * 109.68165 * 110.83486 * 20 15 13 22 22 C 1.52998 * 109.71550 * 350.29345 * 20 15 13 23 23 O 1.42895 * 109.47213 * 296.71904 * 22 20 15 24 24 C 1.50701 * 109.47316 * 184.99981 * 10 9 7 25 25 C 1.38229 * 120.00083 * 279.73085 * 24 10 9 26 26 C 1.38236 * 120.00073 * 179.78742 * 25 24 10 27 27 C 1.38235 * 119.99733 * 0.45822 * 26 25 24 28 28 C 1.38234 * 120.00090 * 359.77090 * 27 26 25 29 29 C 1.38235 * 120.00137 * 0.02562 * 28 27 26 30 30 H 0.97006 * 120.00243 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46886 * 59.99779 * 9 7 2 32 32 H 1.09000 * 109.47019 * 300.00315 * 9 7 2 33 33 H 0.97007 * 120.00139 * 24.99941 * 12 10 9 34 34 H 1.09001 * 109.73997 * 9.74521 * 16 15 13 35 35 H 1.08999 * 109.67866 * 249.15596 * 16 15 13 36 36 H 1.08999 * 109.51686 * 292.33772 * 17 16 15 37 37 H 1.08997 * 109.51514 * 172.23502 * 17 16 15 38 38 H 1.09001 * 109.51040 * 182.50461 * 19 18 17 39 39 H 1.08998 * 109.50899 * 302.60320 * 19 18 17 40 40 H 1.09009 * 109.46600 * 56.71997 * 22 20 15 41 41 H 1.09000 * 109.47315 * 176.71194 * 22 20 15 42 42 H 0.96706 * 113.99679 * 179.97438 * 23 22 20 43 43 H 1.08004 * 120.00210 * 359.97438 * 25 24 10 44 44 H 1.08000 * 119.99923 * 180.24871 * 26 25 24 45 45 H 1.08000 * 119.99979 * 179.79123 * 27 26 25 46 46 H 1.07997 * 120.00113 * 179.97438 * 28 27 26 47 47 H 1.07991 * 120.00543 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8412 12 7 3.0063 -3.6540 1.2524 13 6 4.2309 -4.2145 1.3002 14 8 4.7433 -4.6436 0.2844 15 7 4.8878 -4.2996 2.4740 16 6 4.2436 -3.8918 3.7339 17 6 4.4145 -5.0254 4.7515 18 8 5.7964 -5.3832 4.8313 19 6 6.3407 -5.8917 3.6109 20 6 6.2693 -4.8029 2.5342 21 1 6.9460 -3.9879 2.7908 22 6 6.6633 -5.3924 1.1784 23 8 5.8303 -6.5164 0.8875 24 6 1.4959 -4.9637 -0.1233 25 6 0.8990 -5.5262 0.9894 26 6 0.2079 -6.7179 0.8750 27 6 0.1218 -7.3519 -0.3504 28 6 0.7227 -6.7919 -1.4622 29 6 1.4102 -5.5980 -1.3486 30 1 -0.4851 0.8401 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 2.6287 -3.2450 2.0469 34 1 3.1827 -3.7091 3.5627 35 1 4.7165 -2.9852 4.1113 36 1 3.8321 -5.8905 4.4343 37 1 4.0678 -4.6920 5.7296 38 1 7.3798 -6.1806 3.7683 39 1 5.7658 -6.7604 3.2900 40 1 6.5375 -4.6364 0.4032 41 1 7.7053 -5.7108 1.2097 42 1 6.0242 -6.9408 0.0405 43 1 0.9701 -5.0330 1.9477 44 1 -0.2618 -7.1553 1.7435 45 1 -0.4153 -8.2847 -0.4392 46 1 0.6558 -7.2874 -2.4194 47 1 1.8801 -5.1606 -2.2170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921582520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:48 Heat of formation + Delta-G solvation = -71.685056 kcal Electronic energy + Delta-G solvation = -30613.563400 eV Core-core repulsion = 26569.427080 eV Total energy + Delta-G solvation = -4044.136320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.65 seconds Orbital eigenvalues (eV) -40.54994 -39.05109 -38.03232 -36.49782 -35.01320 -34.44257 -32.76293 -31.93393 -30.73219 -30.37852 -28.84254 -27.82851 -25.86633 -24.86689 -22.86307 -22.28759 -22.10287 -21.82993 -19.90664 -19.35244 -17.74584 -17.29478 -16.84137 -16.42594 -16.13925 -15.57947 -15.41168 -15.22918 -15.03216 -14.77283 -14.58349 -14.37001 -14.30834 -13.61631 -13.39176 -13.14245 -12.99432 -12.95882 -12.54298 -12.48100 -12.09297 -12.04112 -11.54081 -11.49403 -11.20977 -11.09720 -10.90659 -10.78184 -10.70082 -10.58076 -10.41106 -10.16726 -9.85506 -9.71703 -9.27224 -8.91278 -8.51158 -8.45085 -8.29124 -8.18758 -8.08547 -6.09066 -4.11944 1.82497 1.84694 2.87795 3.25339 3.34043 3.38537 3.72041 3.74066 4.17021 4.34359 4.40278 4.61040 4.69295 4.92672 5.02364 5.06712 5.20534 5.27645 5.29443 5.30373 5.35878 5.41196 5.48999 5.50747 5.58015 5.67225 5.74090 5.94748 5.98169 6.01597 6.10589 6.19134 6.39609 6.44944 6.61419 6.66346 6.88441 6.89177 6.99549 7.02847 7.15777 7.29512 7.44961 7.52494 7.69506 7.88433 7.99239 8.26894 8.50081 8.94436 9.17436 9.52965 11.01510 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.005201 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.111015 B = 5382.802149 C = 7354.557552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.203 3.797 11 H 0.086 0.914 12 N -0.718 5.718 13 C 0.714 3.286 14 O -0.574 6.574 15 N -0.631 5.631 16 C 0.078 3.922 17 C 0.050 3.950 18 O -0.384 6.384 19 C 0.054 3.946 20 C 0.135 3.865 21 H 0.083 0.917 22 C 0.084 3.916 23 O -0.552 6.552 24 C -0.069 4.069 25 C -0.105 4.105 26 C -0.125 4.125 27 C -0.135 4.135 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.023 0.977 33 H 0.393 0.607 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.371 0.629 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 -13.073 6.258 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.098 3.902 11 H 0.104 0.896 12 N -0.373 5.373 13 C 0.416 3.584 14 O -0.452 6.452 15 N -0.371 5.371 16 C -0.046 4.046 17 C -0.028 4.028 18 O -0.302 6.302 19 C -0.024 4.024 20 C 0.030 3.970 21 H 0.101 0.899 22 C 0.006 3.994 23 O -0.357 6.357 24 C -0.070 4.070 25 C -0.123 4.123 26 C -0.143 4.143 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.217 0.783 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.998 -13.078 6.235 16.550 hybrid contribution 0.202 1.106 -0.279 1.158 sum 8.200 -11.972 5.957 15.686 Atomic orbital electron populations 1.69968 1.05991 1.26639 1.50540 1.24986 0.94782 0.99187 0.95234 0.86556 0.80154 0.83822 0.77606 1.19803 1.20988 1.21066 1.21169 0.93108 0.90339 1.50838 0.92369 1.19395 0.93239 0.90300 0.98458 1.20081 0.92824 0.91546 0.85761 0.89583 1.45329 1.16528 1.60890 1.14507 1.15780 0.81152 0.78556 0.82865 1.90760 1.66764 1.54273 1.33391 1.47168 1.14433 1.69868 1.05659 1.22301 0.99219 0.98055 0.85047 1.22948 0.83175 0.96911 0.99745 1.87915 1.24911 1.84032 1.33355 1.22999 0.99699 0.95836 0.83848 1.21784 0.82916 0.96112 0.96169 0.89912 1.22260 0.90451 0.90945 0.95700 1.86433 1.61837 1.45444 1.41955 1.20602 0.96557 0.96649 0.93221 1.20844 0.97564 0.95551 0.98352 1.21018 0.99945 0.96062 0.97302 1.20966 1.01169 0.99975 0.93247 1.21019 0.98656 0.96240 0.98189 1.20988 0.99132 0.95050 0.97408 0.92959 0.94753 0.95912 0.77116 0.89135 0.90705 0.92597 0.87883 0.88402 0.91430 0.89575 0.95505 0.78284 0.86956 0.86916 0.86968 0.86735 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.66 8.84 -34.44 -0.30 -13.97 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 10 C 0.20 4.15 2.16 -69.08 -0.15 4.00 16 11 H 0.09 1.93 7.37 -51.93 -0.38 1.55 16 12 N -0.72 -13.24 3.88 -59.81 -0.23 -13.47 16 13 C 0.71 13.00 7.96 -86.92 -0.69 12.31 16 14 O -0.57 -11.52 10.54 -19.17 -0.20 -11.72 16 15 N -0.63 -9.46 3.01 -170.34 -0.51 -9.97 16 16 C 0.08 0.95 6.53 -3.47 -0.02 0.93 16 17 C 0.05 0.55 6.98 37.31 0.26 0.81 16 18 O -0.38 -4.78 10.74 -35.23 -0.38 -5.16 16 19 C 0.05 0.64 6.21 37.31 0.23 0.87 16 20 C 0.13 1.78 3.48 -67.42 -0.23 1.55 16 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 22 C 0.08 1.14 5.80 37.16 0.22 1.35 16 23 O -0.55 -8.16 10.44 -59.69 -0.62 -8.78 16 24 C -0.07 -1.29 4.91 -104.62 -0.51 -1.80 16 25 C -0.10 -1.80 9.33 -39.59 -0.37 -2.17 16 26 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.14 -1.97 10.05 -39.58 -0.40 -2.36 16 28 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 29 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.39 6.80 6.27 -40.82 -0.26 6.55 16 34 H 0.09 1.06 5.89 -51.93 -0.31 0.76 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.91 7.35 -51.93 -0.38 0.53 16 40 H 0.09 1.39 5.99 -51.97 -0.31 1.08 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.37 4.44 9.12 45.56 0.42 4.85 16 43 H 0.11 1.82 7.71 -52.48 -0.40 1.42 16 44 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 46 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.12 1.99 8.04 -52.49 -0.42 1.57 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -32.13 377.82 -10.16 -42.29 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.24 Total: 13.22 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.38 Total: -3.34 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.01 Total: -48.24 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.20 Total: -25.66 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.13 -10.16 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.394 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.65 seconds