Wall clock time and date at job start Tue Mar 31 2020 23:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48503 * 109.46755 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46582 * 299.99276 * 3 2 1 6 6 H 1.48494 * 109.47264 * 59.99726 * 3 2 1 7 7 C 1.37875 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00486 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47296 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47291 * 305.00413 * 10 9 7 12 12 N 1.46501 * 109.47104 * 65.00166 * 10 9 7 13 13 C 1.34772 * 120.00235 * 205.00116 * 12 10 9 14 14 O 1.21593 * 120.00047 * 5.13187 * 13 12 10 15 15 N 1.34776 * 120.00145 * 185.13132 * 13 12 10 16 16 C 1.47263 * 120.96087 * 5.21759 * 15 13 12 17 17 C 1.53292 * 108.32563 * 129.46551 * 16 15 13 18 18 O 1.42967 * 109.26243 * 52.29146 * 17 16 15 19 19 C 1.42969 * 114.16395 * 297.39210 * 18 17 16 20 20 C 1.47157 * 120.97918 * 185.19827 * 15 13 12 21 21 H 1.08996 * 109.68165 * 110.83486 * 20 15 13 22 22 C 1.52998 * 109.71550 * 350.29345 * 20 15 13 23 23 O 1.42895 * 109.47213 * 296.71904 * 22 20 15 24 24 C 1.50701 * 109.47316 * 184.99981 * 10 9 7 25 25 C 1.38229 * 120.00083 * 279.73085 * 24 10 9 26 26 C 1.38236 * 120.00073 * 179.78742 * 25 24 10 27 27 C 1.38235 * 119.99733 * 0.45822 * 26 25 24 28 28 C 1.38234 * 120.00090 * 359.77090 * 27 26 25 29 29 C 1.38235 * 120.00137 * 0.02562 * 28 27 26 30 30 H 0.97006 * 120.00243 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46886 * 59.99779 * 9 7 2 32 32 H 1.09000 * 109.47019 * 300.00315 * 9 7 2 33 33 H 0.97007 * 120.00139 * 24.99941 * 12 10 9 34 34 H 1.09001 * 109.73997 * 9.74521 * 16 15 13 35 35 H 1.08999 * 109.67866 * 249.15596 * 16 15 13 36 36 H 1.08999 * 109.51686 * 292.33772 * 17 16 15 37 37 H 1.08997 * 109.51514 * 172.23502 * 17 16 15 38 38 H 1.09001 * 109.51040 * 182.50461 * 19 18 17 39 39 H 1.08998 * 109.50899 * 302.60320 * 19 18 17 40 40 H 1.09009 * 109.46600 * 56.71997 * 22 20 15 41 41 H 1.09000 * 109.47315 * 176.71194 * 22 20 15 42 42 H 0.96706 * 113.99679 * 179.97438 * 23 22 20 43 43 H 1.08004 * 120.00210 * 359.97438 * 25 24 10 44 44 H 1.08000 * 119.99923 * 180.24871 * 26 25 24 45 45 H 1.08000 * 119.99979 * 179.79123 * 27 26 25 46 46 H 1.07997 * 120.00113 * 179.97438 * 28 27 26 47 47 H 1.07991 * 120.00543 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8412 12 7 3.0063 -3.6540 1.2524 13 6 4.2309 -4.2145 1.3002 14 8 4.7433 -4.6436 0.2844 15 7 4.8878 -4.2996 2.4740 16 6 4.2436 -3.8918 3.7339 17 6 4.4145 -5.0254 4.7515 18 8 5.7964 -5.3832 4.8313 19 6 6.3407 -5.8917 3.6109 20 6 6.2693 -4.8029 2.5342 21 1 6.9460 -3.9879 2.7908 22 6 6.6633 -5.3924 1.1784 23 8 5.8303 -6.5164 0.8875 24 6 1.4959 -4.9637 -0.1233 25 6 0.8990 -5.5262 0.9894 26 6 0.2079 -6.7179 0.8750 27 6 0.1218 -7.3519 -0.3504 28 6 0.7227 -6.7919 -1.4622 29 6 1.4102 -5.5980 -1.3486 30 1 -0.4851 0.8401 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 2.6287 -3.2450 2.0469 34 1 3.1827 -3.7091 3.5627 35 1 4.7165 -2.9852 4.1113 36 1 3.8321 -5.8905 4.4343 37 1 4.0678 -4.6920 5.7296 38 1 7.3798 -6.1806 3.7683 39 1 5.7658 -6.7604 3.2900 40 1 6.5375 -4.6364 0.4032 41 1 7.7053 -5.7108 1.2097 42 1 6.0242 -6.9408 0.0405 43 1 0.9701 -5.0330 1.9477 44 1 -0.2618 -7.1553 1.7435 45 1 -0.4153 -8.2847 -0.4392 46 1 0.6558 -7.2874 -2.4194 47 1 1.8801 -5.1606 -2.2170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921582520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:46 Heat of formation + Delta-G solvation = -92.470640 kcal Electronic energy + Delta-G solvation = -30614.464731 eV Core-core repulsion = 26569.427080 eV Total energy + Delta-G solvation = -4045.037651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.78883 -40.31431 -39.20725 -37.66860 -36.51910 -35.65079 -34.68931 -33.11023 -32.00311 -31.63580 -30.52941 -29.03155 -26.87590 -26.63747 -23.97162 -23.69889 -23.51576 -23.06988 -21.32952 -20.69135 -18.99393 -18.57887 -18.40299 -17.76335 -17.45439 -16.83302 -16.61363 -16.54082 -16.27735 -16.04242 -15.99110 -15.67522 -15.54191 -14.92555 -14.70265 -14.37402 -14.35037 -14.18076 -14.00142 -13.92918 -13.65531 -13.38218 -12.99816 -12.91526 -12.62865 -12.50576 -12.43557 -12.20159 -12.13225 -11.87186 -11.75522 -11.56015 -11.31288 -11.21012 -10.96612 -10.60514 -10.27227 -9.75863 -9.69265 -9.51352 -9.30882 -8.20753 -6.30388 0.53913 0.58401 1.36593 1.39306 1.50672 1.65194 2.33889 2.39110 2.83289 2.89912 3.07522 3.15361 3.52371 3.72121 3.92569 4.03143 4.04142 4.07682 4.12690 4.21809 4.23529 4.32944 4.39527 4.47004 4.53279 4.59877 4.67667 4.77002 4.79062 4.81213 4.82185 4.98893 5.03089 5.15105 5.21431 5.31814 5.42785 5.55201 5.62959 5.65302 5.68184 5.78358 5.92108 6.06193 6.08064 6.17484 6.22370 6.82169 7.00036 7.10878 7.38427 7.76861 8.90148 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.005201 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.111015 B = 5382.802149 C = 7354.557552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.050 0.950 9 C 0.038 3.962 10 C 0.222 3.778 11 H 0.057 0.943 12 N -0.718 5.718 13 C 0.707 3.293 14 O -0.598 6.598 15 N -0.631 5.631 16 C 0.072 3.928 17 C 0.054 3.946 18 O -0.390 6.390 19 C 0.063 3.937 20 C 0.126 3.874 21 H 0.096 0.904 22 C 0.088 3.912 23 O -0.569 6.569 24 C -0.095 4.095 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.123 4.123 29 C -0.130 4.130 30 H 0.264 0.736 31 H 0.004 0.996 32 H 0.009 0.991 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.380 0.620 43 H 0.114 0.886 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 -14.279 7.735 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.068 0.932 9 C 0.001 3.999 10 C 0.116 3.884 11 H 0.075 0.925 12 N -0.372 5.372 13 C 0.409 3.591 14 O -0.478 6.478 15 N -0.370 5.370 16 C -0.051 4.051 17 C -0.023 4.023 18 O -0.308 6.308 19 C -0.015 4.015 20 C 0.022 3.978 21 H 0.114 0.886 22 C 0.011 3.989 23 O -0.375 6.375 24 C -0.096 4.096 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.140 4.140 29 C -0.149 4.149 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.028 0.972 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.227 0.773 43 H 0.132 0.868 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.588 -14.293 7.745 18.386 hybrid contribution 0.021 1.418 -0.759 1.608 sum 8.610 -12.875 6.986 16.991 Atomic orbital electron populations 1.70074 1.07388 1.27624 1.51463 1.25755 0.95561 1.02549 0.94864 0.85539 0.78767 0.79692 0.77854 1.19636 1.20692 1.20031 1.21380 0.92808 0.91596 1.50456 0.93182 1.19128 0.93277 0.91273 0.96228 1.19514 0.91540 0.91584 0.85752 0.92525 1.45161 1.16884 1.61396 1.13805 1.15939 0.80931 0.78527 0.83654 1.90759 1.67215 1.55156 1.34664 1.47251 1.15076 1.69238 1.05437 1.22520 0.99231 0.99161 0.84207 1.23032 0.82612 0.96021 1.00653 1.87914 1.25524 1.83933 1.33436 1.22966 1.00931 0.94405 0.83154 1.22068 0.82040 0.97045 0.96645 0.88595 1.22190 0.92008 0.89883 0.94851 1.86393 1.62729 1.45722 1.42659 1.20488 0.98095 0.96401 0.94629 1.20978 0.98175 0.96673 0.97869 1.21400 0.98994 0.95072 0.98908 1.21434 1.00070 1.00860 0.92407 1.21363 0.97515 0.95158 1.00012 1.21138 1.00360 0.96497 0.96872 0.92725 0.97757 0.97246 0.76659 0.89102 0.89709 0.93247 0.84971 0.85725 0.93082 0.92814 0.92130 0.77271 0.86793 0.83923 0.83269 0.83892 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.52 -28.75 8.84 25.60 0.23 -28.53 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 1.95 4.50 29.85 0.13 2.09 16 10 C 0.22 9.63 2.16 44.24 0.10 9.73 16 11 H 0.06 2.75 7.37 -2.39 -0.02 2.73 16 12 N -0.72 -27.58 3.88 -461.41 -1.79 -29.37 16 13 C 0.71 26.50 7.96 179.06 1.43 27.93 16 14 O -0.60 -25.02 10.54 19.37 0.20 -24.81 16 15 N -0.63 -18.76 3.01 -811.11 -2.44 -21.20 16 16 C 0.07 1.69 6.53 86.33 0.56 2.25 16 17 C 0.05 1.08 6.98 72.08 0.50 1.58 16 18 O -0.39 -8.79 10.74 -148.98 -1.60 -10.39 16 19 C 0.06 1.37 6.21 72.08 0.45 1.82 16 20 C 0.13 3.18 3.48 44.96 0.16 3.34 16 21 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 22 C 0.09 2.34 5.80 71.98 0.42 2.76 16 23 O -0.57 -16.79 10.44 -125.60 -1.31 -18.10 16 24 C -0.09 -3.68 4.91 -19.87 -0.10 -3.78 16 25 C -0.12 -4.08 9.33 22.27 0.21 -3.87 16 26 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 27 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 28 C -0.12 -3.56 10.05 22.27 0.22 -3.34 16 29 C -0.13 -4.68 9.67 22.27 0.22 -4.47 16 30 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 31 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.40 14.26 6.27 -92.70 -0.58 13.68 16 34 H 0.09 2.11 5.89 -2.39 -0.01 2.09 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.30 7.35 -2.39 -0.02 1.28 16 40 H 0.05 1.78 5.99 -3.13 -0.02 1.77 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.38 9.18 9.12 -74.05 -0.68 8.51 16 43 H 0.11 3.75 7.71 -2.91 -0.02 3.72 16 44 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 46 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 47 H 0.11 4.02 8.04 -2.92 -0.02 4.00 16 Total: -1.00 -71.14 377.82 0.53 -70.61 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.27 Total: 39.25 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.43 Total: 2.05 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -3.95 Total: -104.37 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -2.71 Total: -53.30 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.14 0.53 -70.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.860 kcal (2) G-P(sol) polarization free energy of solvation -71.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds