Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47138 * 2 1 4 4 H 1.08999 * 109.47277 * 54.99487 * 3 2 1 5 5 C 1.53003 * 109.46997 * 295.00009 * 3 2 1 6 6 C 1.52999 * 109.47279 * 174.99745 * 3 2 1 7 7 H 1.09005 * 109.46864 * 59.99916 * 6 3 2 8 8 O 1.45197 * 109.46780 * 179.97438 * 6 3 2 9 9 C 1.34230 * 116.99837 * 209.99504 * 8 6 3 10 10 O 1.20823 * 120.00139 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99940 * 179.72588 * 9 8 6 12 12 C 1.50699 * 109.47161 * 180.02562 * 11 9 8 13 13 C 1.37641 * 120.12884 * 265.00229 * 12 11 9 14 14 C 1.38615 * 120.24957 * 179.97438 * 13 12 11 15 15 C 1.38650 * 120.50110 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.24774 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12871 * 84.72835 * 12 11 9 18 18 C 1.41390 * 120.24336 * 359.97438 * 17 12 11 19 19 H 1.08003 * 120.00431 * 333.90160 * 18 17 12 20 20 C 1.39944 * 120.00074 * 153.89461 * 18 17 12 21 21 N 1.30828 * 119.99966 * 343.72285 * 20 18 17 22 22 Si 1.86800 * 120.00082 * 163.71834 * 20 18 17 23 23 H 1.48501 * 109.46929 * 60.00254 * 22 20 18 24 24 H 1.48505 * 109.47176 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47210 * 300.00105 * 22 20 18 26 26 C 1.50702 * 109.47195 * 299.99899 * 6 3 2 27 27 O 1.20824 * 119.99920 * 245.00047 * 26 6 3 28 28 O 1.34228 * 119.99782 * 64.99982 * 26 6 3 29 29 C 1.45200 * 116.99808 * 180.02562 * 28 26 6 30 30 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47260 * 300.00332 * 1 2 3 32 32 H 1.08999 * 109.46960 * 60.00583 * 1 2 3 33 33 H 1.09001 * 109.47699 * 239.99894 * 2 1 3 34 34 H 1.08999 * 109.46960 * 119.99417 * 2 1 3 35 35 H 1.09005 * 109.47029 * 300.00013 * 5 3 2 36 36 H 1.08998 * 109.47457 * 59.99318 * 5 3 2 37 37 H 1.08996 * 109.47453 * 179.97438 * 5 3 2 38 38 H 1.08997 * 109.47383 * 300.00789 * 11 9 8 39 39 H 1.08999 * 109.46836 * 60.00620 * 11 9 8 40 40 H 1.08006 * 119.87562 * 0.02562 * 13 12 11 41 41 H 1.07998 * 119.74613 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.87654 * 180.02562 * 15 14 13 43 43 H 1.08004 * 120.12543 * 179.97438 * 16 15 14 44 44 H 0.97000 * 119.99990 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47252 * 59.99746 * 29 28 26 46 46 H 1.08999 * 109.47085 * 180.02562 * 29 28 26 47 47 H 1.09004 * 109.46720 * 300.00274 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.9995 0.9053 -0.7161 8 8 4.0488 2.8134 0.1252 9 6 5.2739 3.0264 -0.3803 10 8 5.9203 2.0997 -0.8084 11 6 5.8404 4.4223 -0.4199 12 6 7.2180 4.3882 -1.0298 13 6 8.3298 4.3141 -0.2217 14 6 9.5981 4.2821 -0.7801 15 6 9.7624 4.3247 -2.1561 16 6 8.6654 4.3999 -2.9832 17 6 7.3726 4.4261 -2.4278 18 6 6.2376 4.4958 -3.2681 19 1 5.2885 4.1095 -2.9270 20 6 6.3440 5.0657 -4.5419 21 7 7.3772 5.8102 -4.8412 22 14 5.0107 4.7630 -5.8148 23 1 3.7126 5.2704 -5.3021 24 1 5.3576 5.4716 -7.0730 25 1 4.9024 3.3062 -6.0814 26 6 3.9635 0.7707 1.4135 27 8 4.5114 1.4058 2.2832 28 8 3.7099 -0.5349 1.5943 29 6 4.1211 -1.1173 2.8593 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8935 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1252 -1.3970 37 1 1.9982 3.1543 -1.3073 38 1 5.1928 5.0603 -1.0212 39 1 5.9012 4.8186 0.5937 40 1 8.2134 4.2800 0.8515 41 1 10.4648 4.2235 -0.1384 42 1 10.7552 4.2987 -2.5804 43 1 8.7957 4.4333 -4.0549 44 1 7.4508 6.2055 -5.7239 45 1 3.6148 -0.6046 3.6770 46 1 3.8583 -2.1750 2.8748 47 1 5.1996 -1.0095 2.9753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922589707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = -168.072888 kcal Electronic energy + Delta-G solvation = -29740.553215 eV Core-core repulsion = 25659.944453 eV Total energy + Delta-G solvation = -4080.608762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 9.62 seconds Orbital eigenvalues (eV) -41.04168 -39.72836 -37.79572 -36.92239 -36.58287 -35.33197 -33.66678 -31.90458 -30.54508 -29.50108 -28.87611 -27.39804 -26.60505 -25.09014 -23.94408 -22.12926 -20.97994 -20.72186 -20.27994 -19.34296 -18.09228 -17.33732 -17.22198 -17.04787 -16.44144 -15.88966 -15.45427 -15.14515 -14.76966 -14.50879 -14.24103 -13.85611 -13.70525 -13.52057 -13.47988 -13.04359 -12.74076 -12.61007 -12.38597 -12.22259 -12.06848 -11.81233 -11.75390 -11.59605 -11.44661 -11.17850 -11.13001 -11.06465 -11.02285 -10.99830 -10.79747 -10.73669 -10.50776 -10.44357 -10.13129 -9.81017 -9.52711 -9.42339 -9.19174 -7.37637 -7.34982 -6.77667 -4.39995 2.07644 2.23438 2.68789 2.85058 2.97377 3.04568 3.07217 3.25218 3.30775 3.90729 4.39131 4.58787 4.62642 4.68484 4.81907 4.94575 5.03229 5.06746 5.25353 5.33458 5.36641 5.40514 5.47092 5.54889 5.74185 5.78078 5.86527 5.91296 5.95662 5.99109 6.05117 6.16536 6.21624 6.27202 6.31037 6.38750 6.48637 6.68231 6.83710 7.04159 7.25515 7.37594 7.59762 7.61005 7.87624 8.00582 8.09097 8.26275 8.35088 8.59977 8.85994 8.95978 10.16296 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.004097 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.767877 B = 6833.399693 C = 8781.612340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C -0.079 4.079 4 H 0.085 0.915 5 C -0.150 4.150 6 C 0.100 3.900 7 H 0.121 0.879 8 O -0.334 6.334 9 C 0.461 3.539 10 O -0.489 6.489 11 C -0.039 4.039 12 C -0.196 4.196 13 C -0.076 4.076 14 C -0.239 4.239 15 C -0.104 4.104 16 C -0.159 4.159 17 C 0.132 3.868 18 C -0.459 4.459 19 H 0.073 0.927 20 C 0.079 3.921 21 N -0.792 5.792 22 Si 0.903 3.097 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.264 1.264 26 C 0.450 3.550 27 O -0.490 6.490 28 O -0.350 6.350 29 C 0.031 3.969 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -9.243 7.800 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.098 4.098 4 H 0.103 0.897 5 C -0.207 4.207 6 C 0.043 3.957 7 H 0.139 0.861 8 O -0.252 6.252 9 C 0.304 3.696 10 O -0.373 6.373 11 C -0.076 4.076 12 C -0.198 4.198 13 C -0.094 4.094 14 C -0.259 4.259 15 C -0.122 4.122 16 C -0.178 4.178 17 C 0.129 3.871 18 C -0.488 4.488 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.417 5.417 22 Si 0.727 3.273 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.188 1.188 26 C 0.292 3.708 27 O -0.376 6.376 28 O -0.268 6.268 29 C -0.062 4.062 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.007 -9.219 7.762 17.012 hybrid contribution -0.223 -0.272 -0.383 0.520 sum -12.229 -9.491 7.378 17.149 Atomic orbital electron populations 1.21774 0.95141 1.01698 1.01999 1.21817 0.96337 0.94674 1.04152 1.21193 0.89245 0.98301 1.01031 0.89651 1.21870 1.01687 1.01646 0.95456 1.22169 0.96690 0.83190 0.93666 0.86128 1.86737 1.35222 1.27122 1.76111 1.24742 0.78069 0.93963 0.72851 1.90640 1.58876 1.45073 1.42711 1.20001 0.96462 0.88735 1.02397 1.19043 0.90675 1.16289 0.93749 1.20352 0.92869 0.99370 0.96791 1.20318 0.95376 1.15564 0.94613 1.20704 0.97196 1.00657 0.93657 1.21304 0.91807 1.05367 0.99290 1.17335 0.93081 0.86748 0.89925 1.19446 0.96504 1.34591 0.98262 0.90844 1.25878 0.96459 0.92632 0.98989 1.69807 1.28179 1.21866 1.21831 0.86442 0.81455 0.79834 0.79522 1.18847 1.20249 1.18821 1.24122 0.75910 0.80920 0.89873 1.90688 1.38032 1.65065 1.43773 1.86559 1.74626 1.25412 1.40159 1.23297 1.01131 0.98459 0.83344 0.92555 0.92804 0.92291 0.91137 0.89665 0.92105 0.91552 0.91229 0.87218 0.89092 0.89517 0.89499 0.89433 0.86381 0.90772 0.91874 0.87963 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.13 -1.26 5.06 -26.73 -0.14 -1.39 16 3 C -0.08 -0.91 2.18 -90.62 -0.20 -1.10 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.15 -1.66 8.81 37.16 0.33 -1.33 16 6 C 0.10 1.52 2.07 -27.88 -0.06 1.46 16 7 H 0.12 1.91 7.16 -51.93 -0.37 1.54 16 8 O -0.33 -5.95 8.75 -45.90 -0.40 -6.35 16 9 C 0.46 9.60 7.53 36.01 0.27 9.87 16 10 O -0.49 -11.60 15.25 -18.75 -0.29 -11.89 16 11 C -0.04 -0.80 5.29 -29.04 -0.15 -0.95 16 12 C -0.20 -4.75 4.43 -103.91 -0.46 -5.21 16 13 C -0.08 -1.77 9.66 -39.66 -0.38 -2.16 16 14 C -0.24 -5.59 10.05 -39.29 -0.39 -5.99 16 15 C -0.10 -2.51 10.02 -39.66 -0.40 -2.91 16 16 C -0.16 -4.19 8.69 -38.87 -0.34 -4.52 16 17 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 18 C -0.46 -11.84 8.14 -37.74 -0.31 -12.15 16 19 H 0.07 1.83 6.67 -52.48 -0.35 1.48 16 20 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 21 N -0.79 -20.08 10.96 55.55 0.61 -19.47 16 22 Si 0.90 18.40 29.59 -169.99 -5.03 13.37 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 C 0.45 7.04 7.12 36.01 0.26 7.30 16 27 O -0.49 -9.11 16.26 -25.39 -0.41 -9.52 16 28 O -0.35 -4.40 7.70 -39.25 -0.30 -4.71 16 29 C 0.03 0.30 10.56 101.05 1.07 1.37 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.83 5.21 -51.93 -0.27 0.56 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.60 6.56 -51.93 -0.34 0.25 16 37 H 0.07 0.86 7.68 -51.93 -0.40 0.47 16 38 H 0.11 2.18 7.08 -51.93 -0.37 1.81 16 39 H 0.09 1.64 8.05 -51.93 -0.42 1.22 16 40 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.19 6.20 -52.48 -0.33 2.86 16 44 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 45 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -30.99 388.60 -8.16 -39.16 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.97 Total: 7.34 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.23 Total: -13.78 kcal Atomic # 7 Polarization: -20.08 SS G_CDS: 0.61 Total: -19.47 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.40 Total: -32.47 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.99 -8.16 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.917 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.62 seconds