Wall clock time and date at job start Tue Mar 31 2020 17:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47138 * 2 1 4 4 H 1.08999 * 109.47277 * 54.99487 * 3 2 1 5 5 C 1.53003 * 109.46997 * 295.00009 * 3 2 1 6 6 C 1.52999 * 109.47279 * 174.99745 * 3 2 1 7 7 H 1.09005 * 109.46864 * 59.99916 * 6 3 2 8 8 O 1.45197 * 109.46780 * 179.97438 * 6 3 2 9 9 C 1.34230 * 116.99837 * 209.99504 * 8 6 3 10 10 O 1.20823 * 120.00139 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99940 * 179.72588 * 9 8 6 12 12 C 1.50699 * 109.47161 * 180.02562 * 11 9 8 13 13 C 1.37641 * 120.12884 * 265.00229 * 12 11 9 14 14 C 1.38615 * 120.24957 * 179.97438 * 13 12 11 15 15 C 1.38650 * 120.50110 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.24774 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12871 * 84.72835 * 12 11 9 18 18 C 1.41390 * 120.24336 * 359.97438 * 17 12 11 19 19 H 1.08003 * 120.00431 * 333.90160 * 18 17 12 20 20 C 1.39944 * 120.00074 * 153.89461 * 18 17 12 21 21 N 1.30828 * 119.99966 * 343.72285 * 20 18 17 22 22 Si 1.86800 * 120.00082 * 163.71834 * 20 18 17 23 23 H 1.48501 * 109.46929 * 60.00254 * 22 20 18 24 24 H 1.48505 * 109.47176 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47210 * 300.00105 * 22 20 18 26 26 C 1.50702 * 109.47195 * 299.99899 * 6 3 2 27 27 O 1.20824 * 119.99920 * 245.00047 * 26 6 3 28 28 O 1.34228 * 119.99782 * 64.99982 * 26 6 3 29 29 C 1.45200 * 116.99808 * 180.02562 * 28 26 6 30 30 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47260 * 300.00332 * 1 2 3 32 32 H 1.08999 * 109.46960 * 60.00583 * 1 2 3 33 33 H 1.09001 * 109.47699 * 239.99894 * 2 1 3 34 34 H 1.08999 * 109.46960 * 119.99417 * 2 1 3 35 35 H 1.09005 * 109.47029 * 300.00013 * 5 3 2 36 36 H 1.08998 * 109.47457 * 59.99318 * 5 3 2 37 37 H 1.08996 * 109.47453 * 179.97438 * 5 3 2 38 38 H 1.08997 * 109.47383 * 300.00789 * 11 9 8 39 39 H 1.08999 * 109.46836 * 60.00620 * 11 9 8 40 40 H 1.08006 * 119.87562 * 0.02562 * 13 12 11 41 41 H 1.07998 * 119.74613 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.87654 * 180.02562 * 15 14 13 43 43 H 1.08004 * 120.12543 * 179.97438 * 16 15 14 44 44 H 0.97000 * 119.99990 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47252 * 59.99746 * 29 28 26 46 46 H 1.08999 * 109.47085 * 180.02562 * 29 28 26 47 47 H 1.09004 * 109.46720 * 300.00274 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.9995 0.9053 -0.7161 8 8 4.0488 2.8134 0.1252 9 6 5.2739 3.0264 -0.3803 10 8 5.9203 2.0997 -0.8084 11 6 5.8404 4.4223 -0.4199 12 6 7.2180 4.3882 -1.0298 13 6 8.3298 4.3141 -0.2217 14 6 9.5981 4.2821 -0.7801 15 6 9.7624 4.3247 -2.1561 16 6 8.6654 4.3999 -2.9832 17 6 7.3726 4.4261 -2.4278 18 6 6.2376 4.4958 -3.2681 19 1 5.2885 4.1095 -2.9270 20 6 6.3440 5.0657 -4.5419 21 7 7.3772 5.8102 -4.8412 22 14 5.0107 4.7630 -5.8148 23 1 3.7126 5.2704 -5.3021 24 1 5.3576 5.4716 -7.0730 25 1 4.9024 3.3062 -6.0814 26 6 3.9635 0.7707 1.4135 27 8 4.5114 1.4058 2.2832 28 8 3.7099 -0.5349 1.5943 29 6 4.1211 -1.1173 2.8593 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8935 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1252 -1.3970 37 1 1.9982 3.1543 -1.3073 38 1 5.1928 5.0603 -1.0212 39 1 5.9012 4.8186 0.5937 40 1 8.2134 4.2800 0.8515 41 1 10.4648 4.2235 -0.1384 42 1 10.7552 4.2987 -2.5804 43 1 8.7957 4.4333 -4.0549 44 1 7.4508 6.2055 -5.7239 45 1 3.6148 -0.6046 3.6770 46 1 3.8583 -2.1750 2.8748 47 1 5.1996 -1.0095 2.9753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922589707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:21 Heat of formation + Delta-G solvation = -181.898737 kcal Electronic energy + Delta-G solvation = -29741.152748 eV Core-core repulsion = 25659.944453 eV Total energy + Delta-G solvation = -4081.208295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 23.80 seconds Orbital eigenvalues (eV) -42.34075 -41.16964 -39.51166 -38.23334 -37.75000 -36.63424 -35.53728 -33.65793 -31.53732 -31.36427 -29.81190 -28.93907 -27.74921 -26.93107 -24.81773 -23.52623 -22.86210 -22.08949 -21.35031 -20.96461 -19.31958 -19.08596 -18.81761 -18.24360 -17.64863 -17.42128 -17.01887 -16.66228 -16.26644 -15.69924 -15.49114 -15.33826 -15.17424 -14.83445 -14.52693 -14.38711 -14.28877 -13.71831 -13.64039 -13.42269 -13.31674 -13.18436 -13.02605 -12.92539 -12.88768 -12.76462 -12.56791 -12.55740 -12.52501 -12.13128 -12.03212 -12.02431 -11.71237 -11.53897 -11.39318 -11.36035 -11.27370 -11.24712 -11.03831 -9.28090 -9.25891 -8.62104 -6.34089 0.82153 0.85305 1.04531 1.10267 1.37748 1.39089 1.48143 1.54954 1.88944 2.20283 2.75986 3.33760 3.50195 3.67001 3.68544 3.87610 4.06724 4.12165 4.23881 4.25558 4.29926 4.33285 4.45789 4.52281 4.56884 4.62737 4.64849 4.66206 4.71801 4.80575 4.94127 4.99644 5.07869 5.10768 5.15829 5.18920 5.22666 5.29125 5.32915 5.41270 5.49182 5.55494 5.71908 5.98867 6.10368 6.17171 6.36561 6.42120 6.67342 6.77097 6.94449 7.05069 8.34227 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.004097 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.767877 B = 6833.399693 C = 8781.612340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.072 4.072 4 H 0.091 0.909 5 C -0.149 4.149 6 C 0.092 3.908 7 H 0.112 0.888 8 O -0.330 6.330 9 C 0.468 3.532 10 O -0.525 6.525 11 C -0.040 4.040 12 C -0.204 4.204 13 C -0.087 4.087 14 C -0.243 4.243 15 C -0.111 4.111 16 C -0.190 4.190 17 C 0.102 3.898 18 C -0.484 4.484 19 H 0.073 0.927 20 C 0.039 3.961 21 N -0.821 5.821 22 Si 0.970 3.030 23 H -0.251 1.251 24 H -0.267 1.267 25 H -0.267 1.267 26 C 0.453 3.547 27 O -0.526 6.526 28 O -0.343 6.343 29 C 0.023 3.977 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.288 0.712 45 H 0.069 0.931 46 H 0.142 0.858 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 -10.188 8.495 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.091 4.091 4 H 0.110 0.890 5 C -0.206 4.206 6 C 0.035 3.965 7 H 0.130 0.870 8 O -0.247 6.247 9 C 0.312 3.688 10 O -0.413 6.413 11 C -0.077 4.077 12 C -0.205 4.205 13 C -0.105 4.105 14 C -0.262 4.262 15 C -0.129 4.129 16 C -0.210 4.210 17 C 0.100 3.900 18 C -0.513 4.513 19 H 0.091 0.909 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.791 3.209 23 H -0.175 1.175 24 H -0.191 1.191 25 H -0.191 1.191 26 C 0.296 3.704 27 O -0.414 6.414 28 O -0.259 6.259 29 C -0.070 4.070 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.160 0.840 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.036 -10.172 8.475 19.295 hybrid contribution 0.428 -0.063 -0.477 0.644 sum -13.608 -10.234 7.997 18.811 Atomic orbital electron populations 1.21762 0.93332 1.02689 1.02494 1.21808 0.97767 0.92911 1.04068 1.21291 0.86297 1.00028 1.01467 0.89030 1.21890 1.03342 1.00407 0.94997 1.22581 0.98978 0.81552 0.93392 0.87027 1.86687 1.33594 1.29098 1.75303 1.24602 0.78547 0.93494 0.72119 1.90621 1.60075 1.46116 1.44468 1.20012 0.94880 0.89079 1.03703 1.19413 0.92741 1.15058 0.93323 1.20742 0.92808 0.98791 0.98163 1.20699 0.96541 1.14411 0.94592 1.20984 0.97661 1.00037 0.94224 1.21329 0.92948 1.07809 0.98895 1.17703 0.93414 0.87591 0.91307 1.19628 0.96465 1.35730 0.99521 0.90899 1.26676 0.98698 0.91823 1.00413 1.69865 1.29831 1.22406 1.22601 0.85429 0.78990 0.79392 0.77120 1.17516 1.19115 1.19150 1.24157 0.75073 0.81757 0.89416 1.90668 1.39784 1.66038 1.44948 1.86562 1.74015 1.23628 1.41706 1.23665 1.00652 1.00517 0.82159 0.91369 0.92328 0.91781 0.91112 0.89870 0.92622 0.88921 0.92890 0.86778 0.86396 0.87026 0.86621 0.87309 0.88060 0.90136 0.91212 0.84001 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 71.98 0.70 -1.12 16 2 C -0.13 -2.17 5.06 30.60 0.15 -2.01 16 3 C -0.07 -1.56 2.18 -10.79 -0.02 -1.58 16 4 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 5 C -0.15 -3.12 8.81 71.98 0.63 -2.48 16 6 C 0.09 2.76 2.07 29.85 0.06 2.83 16 7 H 0.11 3.59 7.16 -2.38 -0.02 3.57 16 8 O -0.33 -11.75 8.75 -45.07 -0.39 -12.15 16 9 C 0.47 19.67 7.53 71.24 0.54 20.21 16 10 O -0.53 -25.50 15.25 21.97 0.34 -25.16 16 11 C -0.04 -1.64 5.29 29.10 0.15 -1.48 16 12 C -0.20 -9.98 4.43 -19.40 -0.09 -10.07 16 13 C -0.09 -4.03 9.66 22.22 0.21 -3.81 16 14 C -0.24 -11.17 10.05 22.46 0.23 -10.95 16 15 C -0.11 -5.41 10.02 22.22 0.22 -5.19 16 16 C -0.19 -10.39 8.69 22.73 0.20 -10.20 16 17 C 0.10 5.56 5.56 -21.29 -0.12 5.44 16 18 C -0.48 -25.68 8.14 23.46 0.19 -25.49 16 19 H 0.07 3.73 6.67 -2.91 -0.02 3.71 16 20 C 0.04 1.97 5.16 85.26 0.44 2.41 16 21 N -0.82 -42.68 10.96 21.83 0.24 -42.44 16 22 Si 0.97 37.84 29.59 68.60 2.03 39.87 16 23 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 24 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 26 C 0.45 13.96 7.12 71.24 0.51 14.46 16 27 O -0.53 -19.46 16.26 28.32 0.46 -19.00 16 28 O -0.34 -8.18 7.70 -51.40 -0.40 -8.57 16 29 C 0.02 0.39 10.56 113.37 1.20 1.59 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.74 6.57 -2.39 -0.02 0.73 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.45 5.21 -2.39 -0.01 1.44 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.09 1.43 6.56 -2.39 -0.02 1.42 16 37 H 0.05 1.28 7.68 -2.39 -0.02 1.26 16 38 H 0.11 4.57 7.08 -2.39 -0.02 4.55 16 39 H 0.12 4.14 8.05 -2.39 -0.02 4.12 16 40 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.10 5.74 6.20 -2.91 -0.02 5.72 16 44 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 45 H 0.07 1.13 8.13 -2.39 -0.02 1.12 16 46 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 Total: -1.00 -68.73 388.60 8.45 -60.28 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.97 Total: 34.63 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 5.20 Total: -27.46 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.24 Total: -42.44 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: 0.01 Total: -64.89 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -68.73 8.45 -60.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.620 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.80 seconds