Wall clock time and date at job start Tue Mar 31 2020 17:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 H 1.09005 * 109.47091 * 55.00791 * 3 2 1 5 5 C 1.53000 * 109.47440 * 295.00443 * 3 2 1 6 6 C 1.53001 * 109.47274 * 174.99948 * 3 2 1 7 7 H 1.08998 * 109.47206 * 179.97438 * 6 3 2 8 8 O 1.45203 * 109.46961 * 60.00433 * 6 3 2 9 9 C 1.34224 * 117.00230 * 149.99898 * 8 6 3 10 10 O 1.20823 * 120.00408 * 0.02562 * 9 8 6 11 11 C 1.50704 * 120.00216 * 180.02562 * 9 8 6 12 12 C 1.50694 * 109.47262 * 180.02562 * 11 9 8 13 13 C 1.37636 * 120.12716 * 264.99591 * 12 11 9 14 14 C 1.38611 * 120.25061 * 180.29692 * 13 12 11 15 15 C 1.38654 * 120.50038 * 359.44888 * 14 13 12 16 16 C 1.37601 * 120.24725 * 0.55393 * 15 14 13 17 17 C 1.40696 * 120.12850 * 85.02157 * 12 11 9 18 18 C 1.41390 * 120.24641 * 359.95825 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08674 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.09052 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47516 * 89.99468 * 22 20 18 24 24 H 1.48504 * 109.46852 * 209.99866 * 22 20 18 25 25 H 1.48504 * 109.47021 * 329.99095 * 22 20 18 26 26 C 1.50694 * 109.47303 * 300.00631 * 6 3 2 27 27 O 1.20825 * 120.00412 * 119.99816 * 26 6 3 28 28 O 1.34232 * 119.99925 * 299.99605 * 26 6 3 29 29 C 1.45197 * 116.99935 * 180.02562 * 28 26 6 30 30 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46820 * 299.99841 * 1 2 3 32 32 H 1.08995 * 109.47632 * 59.99481 * 1 2 3 33 33 H 1.09001 * 109.47073 * 240.00880 * 2 1 3 34 34 H 1.08994 * 109.47566 * 119.99967 * 2 1 3 35 35 H 1.08998 * 109.46987 * 59.99754 * 5 3 2 36 36 H 1.09007 * 109.47121 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47032 * 299.99651 * 5 3 2 38 38 H 1.08999 * 109.47063 * 59.99772 * 11 9 8 39 39 H 1.08998 * 109.46895 * 300.00205 * 11 9 8 40 40 H 1.08005 * 119.87911 * 0.02875 * 13 12 11 41 41 H 1.07999 * 119.75152 * 179.70481 * 14 13 12 42 42 H 1.07997 * 119.88191 * 180.30111 * 15 14 13 43 43 H 1.08002 * 120.12902 * 179.74889 * 16 15 14 44 44 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47314 * 60.00000 * 29 28 26 46 46 H 1.09003 * 109.46980 * 180.02562 * 29 28 26 47 47 H 1.08999 * 109.47272 * 299.99488 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9281 2.4720 0.1253 8 8 4.1438 0.7264 -0.9957 9 6 5.3607 1.1165 -1.4062 10 8 5.9239 2.0274 -0.8468 11 6 6.0248 0.4183 -2.5650 12 6 7.3724 1.0420 -2.8218 13 6 7.5063 2.0321 -3.7684 14 6 8.7458 2.6032 -4.0111 15 6 9.8614 2.1933 -3.2970 16 6 9.7510 1.2050 -2.3459 17 6 8.4986 0.6140 -2.0952 18 6 8.3731 -0.4021 -1.1200 19 1 7.4257 -0.5635 -0.6272 20 6 9.4764 -1.1985 -0.7933 21 7 10.5154 -1.2344 -1.5874 22 14 9.4655 -2.2107 0.7767 23 1 8.8938 -3.5523 0.4969 24 1 10.8550 -2.3597 1.2792 25 1 8.6393 -1.5246 1.8023 26 6 3.9635 0.7706 1.4133 27 8 4.6638 -0.2138 1.3885 28 8 3.5408 1.2639 2.5879 29 6 3.9641 0.5640 3.7875 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.5489 2.1253 -1.3968 36 1 1.9989 3.1542 -1.3074 37 1 2.0698 1.5877 -2.1491 38 1 5.4025 0.5180 -3.4542 39 1 6.1529 -0.6378 -2.3277 40 1 6.6432 2.3623 -4.3274 41 1 8.8425 3.3762 -4.7591 42 1 10.8214 2.6485 -3.4908 43 1 10.6221 0.8844 -1.7937 44 1 11.2803 -1.7862 -1.3608 45 1 5.0527 0.5655 3.8440 46 1 3.5538 1.0649 4.6644 47 1 3.6034 -0.4640 3.7549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922589708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:37 Heat of formation + Delta-G solvation = -169.435063 kcal Electronic energy + Delta-G solvation = -29971.512205 eV Core-core repulsion = 25890.844375 eV Total energy + Delta-G solvation = -4080.667830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 7.29 seconds Orbital eigenvalues (eV) -40.96554 -39.66202 -37.81735 -36.95227 -36.34470 -35.22316 -33.63218 -31.89474 -30.66823 -29.48328 -28.77810 -27.39401 -26.58112 -25.04174 -23.97673 -21.97750 -21.22405 -20.93819 -19.87781 -19.35624 -17.79166 -17.39529 -17.17788 -16.82881 -16.32855 -15.77911 -15.45784 -15.08010 -14.89280 -14.48488 -14.17752 -14.01185 -13.67804 -13.59259 -13.29834 -13.00916 -12.74474 -12.57914 -12.38983 -12.18933 -12.03606 -11.80879 -11.78644 -11.56421 -11.42926 -11.12827 -11.10875 -10.99612 -10.96253 -10.84647 -10.76447 -10.71467 -10.67223 -10.38737 -10.03885 -9.80860 -9.50970 -9.39393 -9.14528 -7.36628 -7.32466 -6.74654 -4.35475 2.20246 2.30182 2.74381 2.89525 2.98142 3.09524 3.18303 3.28725 3.34642 3.98223 4.38054 4.49975 4.64793 4.69221 4.87950 5.04722 5.09327 5.14567 5.27719 5.29138 5.37242 5.45970 5.48408 5.49263 5.72100 5.74278 5.83662 5.89325 5.92768 5.96210 6.03899 6.18407 6.24671 6.25914 6.32430 6.41182 6.48701 6.69773 6.85954 7.09392 7.27180 7.39349 7.62756 7.73123 7.88680 8.05384 8.11003 8.29299 8.37147 8.64773 8.90474 8.98705 10.19244 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.004385 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.431818 B = 6384.057870 C = 8015.358935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.078 4.078 4 H 0.098 0.902 5 C -0.149 4.149 6 C 0.102 3.898 7 H 0.119 0.881 8 O -0.332 6.332 9 C 0.461 3.539 10 O -0.489 6.489 11 C -0.038 4.038 12 C -0.198 4.198 13 C -0.075 4.075 14 C -0.242 4.242 15 C -0.103 4.103 16 C -0.159 4.159 17 C 0.131 3.869 18 C -0.455 4.455 19 H 0.077 0.923 20 C 0.080 3.920 21 N -0.792 5.792 22 Si 0.901 3.099 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.260 1.260 26 C 0.446 3.554 27 O -0.480 6.480 28 O -0.359 6.359 29 C 0.035 3.965 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.280 0.720 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.840 2.512 4.961 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.097 4.097 4 H 0.116 0.884 5 C -0.206 4.206 6 C 0.045 3.955 7 H 0.137 0.863 8 O -0.250 6.250 9 C 0.304 3.696 10 O -0.374 6.374 11 C -0.075 4.075 12 C -0.200 4.200 13 C -0.093 4.093 14 C -0.261 4.261 15 C -0.122 4.122 16 C -0.178 4.178 17 C 0.129 3.871 18 C -0.484 4.484 19 H 0.095 0.905 20 C -0.138 4.138 21 N -0.417 5.417 22 Si 0.725 3.275 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.184 1.184 26 C 0.287 3.713 27 O -0.364 6.364 28 O -0.276 6.276 29 C -0.059 4.059 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.135 0.865 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.120 0.880 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.210 2.358 5.151 17.172 hybrid contribution 0.421 -0.552 1.080 1.284 sum -15.789 1.807 6.232 17.070 Atomic orbital electron populations 1.21803 0.95358 1.01744 1.01856 1.21603 0.96115 0.95248 1.03086 1.21329 0.89125 0.98430 1.00806 0.88354 1.21870 1.01750 1.00426 0.96585 1.22085 0.95247 0.97152 0.81040 0.86306 1.86730 1.34410 1.59578 1.44292 1.24731 0.78039 0.81985 0.84878 1.90638 1.62514 1.28793 1.55409 1.19992 0.94147 1.01127 0.92271 1.19026 0.92812 1.04841 1.03281 1.20307 0.95833 0.95826 0.97354 1.20295 0.93576 1.06066 1.06172 1.20696 0.96381 0.97753 0.97363 1.21303 0.98581 0.97351 1.00563 1.17350 0.90484 0.89996 0.89293 1.19559 0.97022 1.13364 1.18484 0.90529 1.25863 0.94601 0.96429 0.96944 1.69816 1.05598 1.32452 1.33824 0.86412 0.78338 0.80209 0.82530 1.19312 1.20068 1.18387 1.24014 0.77778 0.83462 0.86086 1.90756 1.33501 1.24824 1.87351 1.86456 1.69916 1.56042 1.15184 1.23277 1.01346 0.97419 0.83836 0.92680 0.92833 0.92214 0.90322 0.92462 0.91541 0.92328 0.91341 0.89213 0.87233 0.89541 0.89525 0.89479 0.86469 0.90874 0.91664 0.88037 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -1.32 5.04 -26.73 -0.13 -1.46 16 3 C -0.08 -0.85 2.22 -90.62 -0.20 -1.05 16 4 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 5 C -0.15 -1.40 8.81 37.16 0.33 -1.07 16 6 C 0.10 1.53 2.20 -27.89 -0.06 1.47 16 7 H 0.12 1.80 7.16 -51.93 -0.37 1.43 16 8 O -0.33 -5.77 8.18 -45.90 -0.38 -6.15 16 9 C 0.46 9.50 7.51 36.01 0.27 9.78 16 10 O -0.49 -11.59 15.25 -18.75 -0.29 -11.88 16 11 C -0.04 -0.78 5.29 -29.04 -0.15 -0.93 16 12 C -0.20 -4.80 4.43 -103.92 -0.46 -5.26 16 13 C -0.07 -1.71 9.66 -39.66 -0.38 -2.09 16 14 C -0.24 -5.57 10.05 -39.29 -0.39 -5.96 16 15 C -0.10 -2.51 10.02 -39.66 -0.40 -2.91 16 16 C -0.16 -4.26 8.68 -38.87 -0.34 -4.60 16 17 C 0.13 3.56 5.56 -106.83 -0.59 2.96 16 18 C -0.46 -12.42 8.14 -37.75 -0.31 -12.73 16 19 H 0.08 2.11 6.68 -52.48 -0.35 1.76 16 20 C 0.08 2.07 5.16 -17.34 -0.09 1.98 16 21 N -0.79 -20.76 10.97 55.55 0.61 -20.15 16 22 Si 0.90 19.95 29.59 -169.99 -5.03 14.92 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.45 7.46 5.96 36.00 0.21 7.68 16 27 O -0.48 -9.86 16.21 -25.41 -0.41 -10.27 16 28 O -0.36 -4.98 10.47 -39.26 -0.41 -5.39 16 29 C 0.03 0.39 10.56 101.05 1.07 1.46 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 33 H 0.08 0.92 7.83 -51.93 -0.41 0.52 16 34 H 0.06 0.69 7.04 -51.93 -0.37 0.32 16 35 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 36 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 38 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 39 H 0.11 2.29 7.06 -51.93 -0.37 1.92 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 43 H 0.12 3.23 6.22 -52.49 -0.33 2.91 16 44 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 45 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -32.24 391.22 -8.33 -40.57 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.05 Total: 6.06 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.28 Total: -13.60 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.61 Total: -20.15 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.48 Total: -33.69 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.24 -8.33 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.865 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.30 seconds