Wall clock time and date at job start Tue Mar 31 2020 17:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 H 1.09005 * 109.47091 * 55.00791 * 3 2 1 5 5 C 1.53000 * 109.47440 * 295.00443 * 3 2 1 6 6 C 1.53001 * 109.47274 * 174.99948 * 3 2 1 7 7 H 1.08998 * 109.47206 * 179.97438 * 6 3 2 8 8 O 1.45203 * 109.46961 * 60.00433 * 6 3 2 9 9 C 1.34224 * 117.00230 * 149.99898 * 8 6 3 10 10 O 1.20823 * 120.00408 * 0.02562 * 9 8 6 11 11 C 1.50704 * 120.00216 * 180.02562 * 9 8 6 12 12 C 1.50694 * 109.47262 * 180.02562 * 11 9 8 13 13 C 1.37636 * 120.12716 * 264.99591 * 12 11 9 14 14 C 1.38611 * 120.25061 * 180.29692 * 13 12 11 15 15 C 1.38654 * 120.50038 * 359.44888 * 14 13 12 16 16 C 1.37601 * 120.24725 * 0.55393 * 15 14 13 17 17 C 1.40696 * 120.12850 * 85.02157 * 12 11 9 18 18 C 1.41390 * 120.24641 * 359.95825 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08674 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.09052 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47516 * 89.99468 * 22 20 18 24 24 H 1.48504 * 109.46852 * 209.99866 * 22 20 18 25 25 H 1.48504 * 109.47021 * 329.99095 * 22 20 18 26 26 C 1.50694 * 109.47303 * 300.00631 * 6 3 2 27 27 O 1.20825 * 120.00412 * 119.99816 * 26 6 3 28 28 O 1.34232 * 119.99925 * 299.99605 * 26 6 3 29 29 C 1.45197 * 116.99935 * 180.02562 * 28 26 6 30 30 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46820 * 299.99841 * 1 2 3 32 32 H 1.08995 * 109.47632 * 59.99481 * 1 2 3 33 33 H 1.09001 * 109.47073 * 240.00880 * 2 1 3 34 34 H 1.08994 * 109.47566 * 119.99967 * 2 1 3 35 35 H 1.08998 * 109.46987 * 59.99754 * 5 3 2 36 36 H 1.09007 * 109.47121 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47032 * 299.99651 * 5 3 2 38 38 H 1.08999 * 109.47063 * 59.99772 * 11 9 8 39 39 H 1.08998 * 109.46895 * 300.00205 * 11 9 8 40 40 H 1.08005 * 119.87911 * 0.02875 * 13 12 11 41 41 H 1.07999 * 119.75152 * 179.70481 * 14 13 12 42 42 H 1.07997 * 119.88191 * 180.30111 * 15 14 13 43 43 H 1.08002 * 120.12902 * 179.74889 * 16 15 14 44 44 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47314 * 60.00000 * 29 28 26 46 46 H 1.09003 * 109.46980 * 180.02562 * 29 28 26 47 47 H 1.08999 * 109.47272 * 299.99488 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9281 2.4720 0.1253 8 8 4.1438 0.7264 -0.9957 9 6 5.3607 1.1165 -1.4062 10 8 5.9239 2.0274 -0.8468 11 6 6.0248 0.4183 -2.5650 12 6 7.3724 1.0420 -2.8218 13 6 7.5063 2.0321 -3.7684 14 6 8.7458 2.6032 -4.0111 15 6 9.8614 2.1933 -3.2970 16 6 9.7510 1.2050 -2.3459 17 6 8.4986 0.6140 -2.0952 18 6 8.3731 -0.4021 -1.1200 19 1 7.4257 -0.5635 -0.6272 20 6 9.4764 -1.1985 -0.7933 21 7 10.5154 -1.2344 -1.5874 22 14 9.4655 -2.2107 0.7767 23 1 8.8938 -3.5523 0.4969 24 1 10.8550 -2.3597 1.2792 25 1 8.6393 -1.5246 1.8023 26 6 3.9635 0.7706 1.4133 27 8 4.6638 -0.2138 1.3885 28 8 3.5408 1.2639 2.5879 29 6 3.9641 0.5640 3.7875 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.5489 2.1253 -1.3968 36 1 1.9989 3.1542 -1.3074 37 1 2.0698 1.5877 -2.1491 38 1 5.4025 0.5180 -3.4542 39 1 6.1529 -0.6378 -2.3277 40 1 6.6432 2.3623 -4.3274 41 1 8.8425 3.3762 -4.7591 42 1 10.8214 2.6485 -3.4908 43 1 10.6221 0.8844 -1.7937 44 1 11.2803 -1.7862 -1.3608 45 1 5.0527 0.5655 3.8440 46 1 3.5538 1.0649 4.6644 47 1 3.6034 -0.4640 3.7549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922589708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:07 Heat of formation + Delta-G solvation = -184.971897 kcal Electronic energy + Delta-G solvation = -29972.185933 eV Core-core repulsion = 25890.844375 eV Total energy + Delta-G solvation = -4081.341558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 37.85 seconds Orbital eigenvalues (eV) -42.32751 -41.13794 -39.52465 -38.31313 -37.62251 -36.51945 -35.57094 -33.64842 -31.67102 -31.39563 -29.72994 -28.94968 -27.78214 -26.94107 -24.82313 -23.49063 -22.86661 -22.40576 -21.26586 -20.84795 -19.14613 -19.06376 -18.86887 -18.14310 -17.57130 -17.35924 -17.15656 -16.48075 -16.28617 -15.85377 -15.45898 -15.40395 -15.26397 -14.94714 -14.45744 -14.42863 -14.24714 -13.86822 -13.62842 -13.45631 -13.37265 -13.13550 -12.98455 -12.95651 -12.85718 -12.81620 -12.59528 -12.57075 -12.56291 -12.19225 -12.00306 -11.97461 -11.67088 -11.56976 -11.50698 -11.38017 -11.29406 -11.24670 -11.08995 -9.27321 -9.25279 -8.67868 -6.37168 0.81176 0.89289 1.01321 1.13343 1.26759 1.38522 1.45439 1.46277 1.89475 2.13932 2.71301 3.35428 3.45488 3.64678 3.69927 3.89299 4.04478 4.14375 4.18912 4.19940 4.32135 4.34150 4.47747 4.55139 4.57280 4.59069 4.62879 4.68371 4.73481 4.76922 4.95589 5.01660 5.09180 5.10265 5.13780 5.17477 5.19454 5.27566 5.32964 5.45867 5.48707 5.50756 5.71652 5.98344 6.10704 6.17935 6.36026 6.43921 6.67762 6.79621 6.92220 7.03909 8.28448 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.004385 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.431818 B = 6384.057870 C = 8015.358935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.070 4.070 4 H 0.122 0.878 5 C -0.147 4.147 6 C 0.095 3.905 7 H 0.119 0.881 8 O -0.325 6.325 9 C 0.468 3.532 10 O -0.527 6.527 11 C -0.040 4.040 12 C -0.203 4.203 13 C -0.081 4.081 14 C -0.238 4.238 15 C -0.111 4.111 16 C -0.192 4.192 17 C 0.099 3.901 18 C -0.486 4.486 19 H 0.060 0.940 20 C 0.044 3.956 21 N -0.818 5.818 22 Si 0.960 3.040 23 H -0.257 1.257 24 H -0.257 1.257 25 H -0.279 1.279 26 C 0.446 3.554 27 O -0.528 6.528 28 O -0.350 6.350 29 C 0.027 3.973 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.288 0.712 45 H 0.047 0.953 46 H 0.146 0.854 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 3.539 4.603 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.089 4.089 4 H 0.140 0.860 5 C -0.204 4.204 6 C 0.038 3.962 7 H 0.137 0.863 8 O -0.242 6.242 9 C 0.313 3.687 10 O -0.415 6.415 11 C -0.077 4.077 12 C -0.204 4.204 13 C -0.099 4.099 14 C -0.257 4.257 15 C -0.129 4.129 16 C -0.211 4.211 17 C 0.097 3.903 18 C -0.515 4.515 19 H 0.078 0.922 20 C -0.171 4.171 21 N -0.444 5.444 22 Si 0.782 3.218 23 H -0.181 1.181 24 H -0.181 1.181 25 H -0.204 1.204 26 C 0.289 3.711 27 O -0.417 6.417 28 O -0.267 6.267 29 C -0.066 4.066 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.164 0.836 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.745 3.387 4.786 19.641 hybrid contribution 1.106 -0.765 1.186 1.793 sum -17.639 2.623 5.972 18.807 Atomic orbital electron populations 1.21769 0.92864 1.02394 1.03109 1.21591 0.98234 0.94783 1.01460 1.21463 0.85598 0.99027 1.02776 0.86008 1.21887 1.03421 1.00145 0.94952 1.22579 0.97844 0.96291 0.79499 0.86313 1.86689 1.32839 1.59547 1.45145 1.24581 0.78556 0.81136 0.84458 1.90617 1.63636 1.30615 1.56594 1.20015 0.93423 1.00054 0.94199 1.19436 0.93608 1.04725 1.02650 1.20770 0.97276 0.94919 0.96905 1.20762 0.93067 1.06021 1.05846 1.21000 0.98181 0.97046 0.96696 1.21294 0.98221 0.99286 1.02318 1.17696 0.91765 0.90636 0.90233 1.19577 0.97089 1.14907 1.19975 0.92223 1.26480 0.94133 0.97182 0.99314 1.69844 1.06160 1.33356 1.35016 0.85543 0.78827 0.78934 0.78508 1.18128 1.18070 1.20437 1.24423 0.76660 0.82696 0.87361 1.90739 1.35778 1.27085 1.88081 1.86450 1.69244 1.55814 1.15147 1.23619 1.00673 0.98375 0.83942 0.92448 0.91627 0.90831 0.91837 0.94334 0.88876 0.91915 0.92499 0.84943 0.88264 0.85681 0.86057 0.87292 0.88476 0.90106 0.93414 0.83597 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.67 71.98 0.70 -1.26 16 2 C -0.12 -2.49 5.04 30.59 0.15 -2.33 16 3 C -0.07 -1.39 2.22 -10.79 -0.02 -1.41 16 4 H 0.12 1.88 8.11 -2.38 -0.02 1.86 16 5 C -0.15 -2.36 8.81 71.98 0.63 -1.73 16 6 C 0.09 2.81 2.20 29.85 0.07 2.88 16 7 H 0.12 3.57 7.16 -2.39 -0.02 3.55 16 8 O -0.33 -11.36 8.18 -44.99 -0.37 -11.73 16 9 C 0.47 19.52 7.51 71.24 0.54 20.05 16 10 O -0.53 -25.51 15.25 21.97 0.34 -25.18 16 11 C -0.04 -1.63 5.29 29.10 0.15 -1.48 16 12 C -0.20 -9.84 4.43 -19.41 -0.09 -9.92 16 13 C -0.08 -3.52 9.66 22.22 0.21 -3.31 16 14 C -0.24 -10.44 10.05 22.46 0.23 -10.22 16 15 C -0.11 -5.36 10.02 22.22 0.22 -5.14 16 16 C -0.19 -10.63 8.68 22.73 0.20 -10.44 16 17 C 0.10 5.54 5.56 -21.29 -0.12 5.43 16 18 C -0.49 -27.87 8.14 23.46 0.19 -27.68 16 19 H 0.06 3.51 6.68 -2.91 -0.02 3.49 16 20 C 0.04 2.39 5.16 85.26 0.44 2.83 16 21 N -0.82 -44.44 10.97 21.82 0.24 -44.20 16 22 Si 0.96 42.52 29.59 68.60 2.03 44.55 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C 0.45 15.14 5.96 71.23 0.42 15.56 16 27 O -0.53 -22.65 16.21 28.33 0.46 -22.19 16 28 O -0.35 -9.50 10.47 -51.44 -0.54 -10.04 16 29 C 0.03 0.58 10.56 113.37 1.20 1.78 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.80 6.56 -2.39 -0.02 0.79 16 33 H 0.06 1.46 7.83 -2.39 -0.02 1.44 16 34 H 0.04 0.91 7.04 -2.39 -0.02 0.90 16 35 H 0.09 1.02 6.56 -2.39 -0.02 1.01 16 36 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.06 1.06 7.68 -2.39 -0.02 1.04 16 38 H 0.13 4.15 8.05 -2.39 -0.02 4.13 16 39 H 0.10 4.28 7.06 -2.39 -0.02 4.26 16 40 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 43 H 0.10 5.65 6.22 -2.91 -0.02 5.63 16 44 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 45 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 46 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 Total: -1.00 -73.98 391.22 8.25 -65.73 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.97 Total: 29.44 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 5.12 Total: -26.38 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.24 Total: -44.20 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: -0.11 Total: -69.14 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.98 8.25 -65.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.242 kcal (2) G-P(sol) polarization free energy of solvation -73.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.85 seconds