Wall clock time and date at job start Tue Mar 31 2020 17:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47211 * 2 1 4 4 H 1.09005 * 109.47278 * 305.00274 * 3 2 1 5 5 C 1.52993 * 109.47082 * 65.00192 * 3 2 1 6 6 C 1.53000 * 109.47041 * 185.00416 * 3 2 1 7 7 H 1.08996 * 109.47030 * 299.99790 * 6 3 2 8 8 O 1.45198 * 109.47345 * 60.00050 * 6 3 2 9 9 C 1.34224 * 116.99978 * 210.00074 * 8 6 3 10 10 O 1.20826 * 119.99997 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00230 * 179.97438 * 9 8 6 12 12 C 1.50695 * 109.47456 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.13234 * 265.00383 * 12 11 9 14 14 C 1.38611 * 120.25061 * 180.29534 * 13 12 11 15 15 C 1.38653 * 120.50140 * 359.44427 * 14 13 12 16 16 C 1.37598 * 120.24629 * 0.55396 * 15 14 13 17 17 C 1.40704 * 120.12499 * 85.02296 * 12 11 9 18 18 C 1.41387 * 120.24480 * 359.96030 * 17 12 11 19 19 H 1.08006 * 119.99793 * 334.08076 * 18 17 12 20 20 C 1.39940 * 120.00234 * 154.08580 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61546 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62649 * 20 18 17 23 23 H 1.48494 * 109.47516 * 89.99468 * 22 20 18 24 24 H 1.48504 * 109.46852 * 209.99866 * 22 20 18 25 25 H 1.48504 * 109.47021 * 329.99095 * 22 20 18 26 26 C 1.50704 * 109.46966 * 180.02562 * 6 3 2 27 27 O 1.20825 * 119.99338 * 244.99858 * 26 6 3 28 28 O 1.34226 * 120.00193 * 64.99450 * 26 6 3 29 29 C 1.45203 * 116.99923 * 179.97438 * 28 26 6 30 30 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46636 * 300.00056 * 1 2 3 32 32 H 1.09006 * 109.47133 * 59.99530 * 1 2 3 33 33 H 1.09004 * 109.46943 * 240.00608 * 2 1 3 34 34 H 1.08997 * 109.47170 * 120.00195 * 2 1 3 35 35 H 1.09004 * 109.47514 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47474 * 299.99844 * 5 3 2 37 37 H 1.08995 * 109.47482 * 59.99644 * 5 3 2 38 38 H 1.08999 * 109.46620 * 60.00148 * 11 9 8 39 39 H 1.08998 * 109.47325 * 300.00590 * 11 9 8 40 40 H 1.08002 * 119.87271 * 0.02562 * 13 12 11 41 41 H 1.07999 * 119.75152 * 179.70481 * 14 13 12 42 42 H 1.08004 * 119.87985 * 180.29954 * 15 14 13 43 43 H 1.08002 * 120.12910 * 179.74432 * 16 15 14 44 44 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.47131 * 179.97438 * 29 28 26 46 46 H 1.08999 * 109.47346 * 300.00691 * 29 28 26 47 47 H 1.09001 * 109.46898 * 60.00514 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4443 -0.1258 7 1 3.9995 0.9053 0.7159 8 8 3.9490 0.7952 -1.3665 9 6 5.1320 0.1614 -1.3819 10 8 5.8241 0.1498 -0.3915 11 6 5.5973 -0.5357 -2.6343 12 6 6.9455 -1.1627 -2.3890 13 6 8.0944 -0.4874 -2.7328 14 6 9.3356 -1.0644 -2.5139 15 6 9.4355 -2.3211 -1.9366 16 6 8.3003 -3.0145 -1.5849 17 6 7.0346 -2.4411 -1.8078 18 6 5.8612 -3.1441 -1.4501 19 1 4.9559 -2.6019 -1.2198 20 6 5.8727 -4.5423 -1.3943 21 7 6.8390 -5.2119 -1.9682 22 14 4.5083 -5.4528 -0.5004 23 1 3.4052 -5.7475 -1.4498 24 1 5.0405 -6.7250 0.0504 25 1 3.9947 -4.6096 0.6089 26 6 4.0673 2.8651 -0.1252 27 8 4.6060 3.3157 -1.1083 28 8 3.9162 3.6300 0.9674 29 6 4.4246 4.9882 0.8968 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.9991 3.1541 1.3076 36 1 0.5491 2.1253 1.3970 37 1 2.0699 1.5875 2.1491 38 1 5.6759 0.1884 -3.4452 39 1 4.8802 -1.3100 -2.9069 40 1 8.0285 0.4940 -3.1789 41 1 10.2318 -0.5293 -2.7911 42 1 10.4079 -2.7591 -1.7662 43 1 8.3802 -3.9950 -1.1392 44 1 6.8473 -6.1811 -1.9293 45 1 4.2383 5.4956 1.8433 46 1 5.4967 4.9652 0.7013 47 1 3.9201 5.5236 0.0925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922589709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:19 Heat of formation + Delta-G solvation = -168.790546 kcal Electronic energy + Delta-G solvation = -29779.927707 eV Core-core repulsion = 25699.287825 eV Total energy + Delta-G solvation = -4080.639882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 8.69 seconds Orbital eigenvalues (eV) -41.02903 -39.72557 -37.80455 -36.91971 -36.55043 -35.28666 -33.66828 -31.91058 -30.89102 -29.50715 -28.26150 -27.58777 -26.51258 -25.05186 -24.31480 -21.91411 -20.97830 -20.72744 -20.27459 -19.35825 -18.02353 -17.36426 -17.22240 -17.03112 -16.44406 -15.88160 -15.47327 -15.14332 -14.77476 -14.53402 -14.09853 -13.99182 -13.65593 -13.48243 -13.37793 -13.07897 -12.69479 -12.61140 -12.47619 -12.28206 -12.03934 -11.79457 -11.75178 -11.60497 -11.43996 -11.18207 -11.12267 -11.01155 -11.00548 -10.87932 -10.75403 -10.71627 -10.67346 -10.43593 -10.09948 -9.81381 -9.52475 -9.42797 -9.19175 -7.37636 -7.35013 -6.78088 -4.39897 2.07939 2.23862 2.68994 2.84242 2.97272 3.05040 3.09334 3.24339 3.31652 3.90748 4.37556 4.57400 4.62661 4.73853 4.89646 4.95137 5.03274 5.07529 5.24689 5.33240 5.37626 5.42016 5.48625 5.56515 5.74439 5.78088 5.88074 5.92722 5.95885 6.02349 6.05527 6.18690 6.23767 6.27232 6.31603 6.38692 6.48619 6.68230 6.83737 7.04021 7.25407 7.37450 7.59741 7.61550 7.87655 8.00556 8.09121 8.26205 8.35152 8.59944 8.85960 8.95894 10.16007 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.004346 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.485304 B = 6440.595007 C = 8529.056825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.079 4.079 4 H 0.085 0.915 5 C -0.157 4.157 6 C 0.100 3.900 7 H 0.121 0.879 8 O -0.334 6.334 9 C 0.461 3.539 10 O -0.489 6.489 11 C -0.039 4.039 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.240 4.240 15 C -0.103 4.103 16 C -0.158 4.158 17 C 0.131 3.869 18 C -0.458 4.458 19 H 0.074 0.926 20 C 0.079 3.921 21 N -0.791 5.791 22 Si 0.902 3.098 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.261 1.261 26 C 0.451 3.549 27 O -0.490 6.490 28 O -0.351 6.351 29 C 0.032 3.968 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.473 11.544 5.028 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.097 4.097 4 H 0.104 0.896 5 C -0.214 4.214 6 C 0.043 3.957 7 H 0.139 0.861 8 O -0.252 6.252 9 C 0.304 3.696 10 O -0.373 6.373 11 C -0.076 4.076 12 C -0.198 4.198 13 C -0.093 4.093 14 C -0.259 4.259 15 C -0.122 4.122 16 C -0.178 4.178 17 C 0.129 3.871 18 C -0.488 4.488 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.417 5.417 22 Si 0.726 3.274 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.184 1.184 26 C 0.292 3.708 27 O -0.376 6.376 28 O -0.268 6.268 29 C -0.062 4.062 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.082 0.918 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.008 11.472 5.008 16.670 hybrid contribution -0.208 -0.224 0.411 0.512 sum -11.216 11.248 5.420 16.784 Atomic orbital electron populations 1.21792 0.95292 1.01892 1.01730 1.21580 0.96233 0.94596 1.03589 1.21191 0.89312 0.98970 1.00246 0.89645 1.22050 1.01861 1.01745 0.95755 1.22166 0.97012 0.86775 0.89764 0.86140 1.86735 1.39146 1.63063 1.36268 1.24740 0.77725 0.75188 0.91972 1.90641 1.54168 1.56907 1.35598 1.20000 0.97769 0.98769 0.91048 1.19043 0.90814 0.98505 1.11437 1.20346 0.92758 0.96954 0.99283 1.20316 0.95556 0.97883 1.12127 1.20706 0.97077 0.94843 0.99570 1.21294 0.91456 1.00579 1.04434 1.17341 0.93134 0.89737 0.86896 1.19467 0.97374 0.90843 1.41066 0.90815 1.25877 0.96686 0.98219 0.93168 1.69812 1.30688 1.09041 1.32111 0.86406 0.81227 0.79088 0.80663 1.19339 1.20023 1.18444 1.24101 0.76448 0.89165 0.81080 1.90688 1.38956 1.73575 1.34379 1.86568 1.74016 1.25978 1.40197 1.23292 0.99987 0.79453 1.03464 0.92461 0.92560 0.92665 0.90447 0.91390 0.90773 0.91320 0.91843 0.89087 0.87227 0.89521 0.89500 0.89435 0.86418 0.90827 0.87970 0.91788 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.12 -1.39 5.33 -26.73 -0.14 -1.53 16 3 C -0.08 -0.90 2.18 -90.62 -0.20 -1.10 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 5 C -0.16 -1.45 8.42 37.15 0.31 -1.14 16 6 C 0.10 1.52 2.07 -27.88 -0.06 1.46 16 7 H 0.12 1.91 7.16 -51.93 -0.37 1.54 16 8 O -0.33 -5.95 8.67 -45.88 -0.40 -6.34 16 9 C 0.46 9.60 7.56 36.01 0.27 9.87 16 10 O -0.49 -11.61 15.25 -18.75 -0.29 -11.90 16 11 C -0.04 -0.79 5.29 -29.04 -0.15 -0.95 16 12 C -0.20 -4.77 4.43 -103.91 -0.46 -5.23 16 13 C -0.08 -1.76 9.66 -39.66 -0.38 -2.15 16 14 C -0.24 -5.60 10.05 -39.29 -0.39 -5.99 16 15 C -0.10 -2.51 10.02 -39.66 -0.40 -2.91 16 16 C -0.16 -4.18 8.68 -38.87 -0.34 -4.52 16 17 C 0.13 3.48 5.56 -106.83 -0.59 2.88 16 18 C -0.46 -11.82 8.14 -37.75 -0.31 -12.13 16 19 H 0.07 1.84 6.68 -52.48 -0.35 1.49 16 20 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 21 N -0.79 -20.06 10.97 55.55 0.61 -19.45 16 22 Si 0.90 18.37 29.59 -169.99 -5.03 13.34 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 C 0.45 7.05 7.11 36.01 0.26 7.31 16 27 O -0.49 -9.12 16.26 -25.39 -0.41 -9.53 16 28 O -0.35 -4.42 7.78 -39.25 -0.31 -4.72 16 29 C 0.03 0.30 10.56 101.05 1.07 1.37 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.70 5.53 -51.93 -0.29 0.41 16 36 H 0.07 0.52 6.57 -51.93 -0.34 0.18 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.64 8.05 -51.93 -0.42 1.23 16 39 H 0.11 2.17 7.06 -51.93 -0.37 1.80 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 43 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 44 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 47 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -31.04 388.69 -8.19 -39.23 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.98 Total: 7.41 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.25 Total: -13.90 kcal Atomic # 7 Polarization: -20.06 SS G_CDS: 0.61 Total: -19.45 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.40 Total: -32.49 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.04 -8.19 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.563 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.69 seconds