Wall clock time and date at job start Tue Mar 31 2020 17:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47211 * 2 1 4 4 H 1.09005 * 109.47278 * 305.00274 * 3 2 1 5 5 C 1.52993 * 109.47082 * 65.00192 * 3 2 1 6 6 C 1.53000 * 109.47041 * 185.00416 * 3 2 1 7 7 H 1.08996 * 109.47030 * 299.99790 * 6 3 2 8 8 O 1.45198 * 109.47345 * 60.00050 * 6 3 2 9 9 C 1.34224 * 116.99978 * 210.00074 * 8 6 3 10 10 O 1.20826 * 119.99997 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00230 * 179.97438 * 9 8 6 12 12 C 1.50695 * 109.47456 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.13234 * 265.00383 * 12 11 9 14 14 C 1.38611 * 120.25061 * 180.29534 * 13 12 11 15 15 C 1.38653 * 120.50140 * 359.44427 * 14 13 12 16 16 C 1.37598 * 120.24629 * 0.55396 * 15 14 13 17 17 C 1.40704 * 120.12499 * 85.02296 * 12 11 9 18 18 C 1.41387 * 120.24480 * 359.96030 * 17 12 11 19 19 H 1.08006 * 119.99793 * 334.08076 * 18 17 12 20 20 C 1.39940 * 120.00234 * 154.08580 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61546 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62649 * 20 18 17 23 23 H 1.48494 * 109.47516 * 89.99468 * 22 20 18 24 24 H 1.48504 * 109.46852 * 209.99866 * 22 20 18 25 25 H 1.48504 * 109.47021 * 329.99095 * 22 20 18 26 26 C 1.50704 * 109.46966 * 180.02562 * 6 3 2 27 27 O 1.20825 * 119.99338 * 244.99858 * 26 6 3 28 28 O 1.34226 * 120.00193 * 64.99450 * 26 6 3 29 29 C 1.45203 * 116.99923 * 179.97438 * 28 26 6 30 30 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46636 * 300.00056 * 1 2 3 32 32 H 1.09006 * 109.47133 * 59.99530 * 1 2 3 33 33 H 1.09004 * 109.46943 * 240.00608 * 2 1 3 34 34 H 1.08997 * 109.47170 * 120.00195 * 2 1 3 35 35 H 1.09004 * 109.47514 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47474 * 299.99844 * 5 3 2 37 37 H 1.08995 * 109.47482 * 59.99644 * 5 3 2 38 38 H 1.08999 * 109.46620 * 60.00148 * 11 9 8 39 39 H 1.08998 * 109.47325 * 300.00590 * 11 9 8 40 40 H 1.08002 * 119.87271 * 0.02562 * 13 12 11 41 41 H 1.07999 * 119.75152 * 179.70481 * 14 13 12 42 42 H 1.08004 * 119.87985 * 180.29954 * 15 14 13 43 43 H 1.08002 * 120.12910 * 179.74432 * 16 15 14 44 44 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.47131 * 179.97438 * 29 28 26 46 46 H 1.08999 * 109.47346 * 300.00691 * 29 28 26 47 47 H 1.09001 * 109.46898 * 60.00514 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4443 -0.1258 7 1 3.9995 0.9053 0.7159 8 8 3.9490 0.7952 -1.3665 9 6 5.1320 0.1614 -1.3819 10 8 5.8241 0.1498 -0.3915 11 6 5.5973 -0.5357 -2.6343 12 6 6.9455 -1.1627 -2.3890 13 6 8.0944 -0.4874 -2.7328 14 6 9.3356 -1.0644 -2.5139 15 6 9.4355 -2.3211 -1.9366 16 6 8.3003 -3.0145 -1.5849 17 6 7.0346 -2.4411 -1.8078 18 6 5.8612 -3.1441 -1.4501 19 1 4.9559 -2.6019 -1.2198 20 6 5.8727 -4.5423 -1.3943 21 7 6.8390 -5.2119 -1.9682 22 14 4.5083 -5.4528 -0.5004 23 1 3.4052 -5.7475 -1.4498 24 1 5.0405 -6.7250 0.0504 25 1 3.9947 -4.6096 0.6089 26 6 4.0673 2.8651 -0.1252 27 8 4.6060 3.3157 -1.1083 28 8 3.9162 3.6300 0.9674 29 6 4.4246 4.9882 0.8968 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.9991 3.1541 1.3076 36 1 0.5491 2.1253 1.3970 37 1 2.0699 1.5875 2.1491 38 1 5.6759 0.1884 -3.4452 39 1 4.8802 -1.3100 -2.9069 40 1 8.0285 0.4940 -3.1789 41 1 10.2318 -0.5293 -2.7911 42 1 10.4079 -2.7591 -1.7662 43 1 8.3802 -3.9950 -1.1392 44 1 6.8473 -6.1811 -1.9293 45 1 4.2383 5.4956 1.8433 46 1 5.4967 4.9652 0.7013 47 1 3.9201 5.5236 0.0925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922589709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:08 Heat of formation + Delta-G solvation = -182.692094 kcal Electronic energy + Delta-G solvation = -29780.530523 eV Core-core repulsion = 25699.287825 eV Total energy + Delta-G solvation = -4081.242698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = -4.14 seconds Orbital eigenvalues (eV) -42.33371 -41.16391 -39.51789 -38.25724 -37.71423 -36.60577 -35.54151 -33.66187 -31.89106 -31.40045 -29.29938 -28.90382 -27.78808 -26.88907 -25.19649 -23.37964 -22.86033 -22.02782 -21.34349 -21.02293 -19.26906 -19.08800 -18.83707 -18.24683 -17.64474 -17.41362 -17.01702 -16.66102 -16.28116 -15.72334 -15.50637 -15.37932 -15.18669 -14.84397 -14.41109 -14.37712 -14.26449 -13.74875 -13.57133 -13.49890 -13.38594 -13.16325 -13.01728 -12.94942 -12.84757 -12.75557 -12.59806 -12.56854 -12.54214 -12.13906 -12.07328 -11.83062 -11.65953 -11.62549 -11.47830 -11.38707 -11.27664 -11.23935 -11.03664 -9.28345 -9.26053 -8.62799 -6.34254 0.82019 0.85583 1.04002 1.10098 1.37453 1.39412 1.48260 1.54389 1.89453 2.19981 2.75535 3.33143 3.50517 3.67546 3.69046 3.91110 4.05449 4.08936 4.23983 4.25892 4.29338 4.32364 4.43487 4.52045 4.59216 4.62294 4.63932 4.65977 4.71438 4.80514 4.94141 5.01376 5.07588 5.12797 5.15667 5.15829 5.23084 5.28235 5.32572 5.42418 5.48888 5.53880 5.71639 5.98697 6.10096 6.17002 6.36292 6.42593 6.67137 6.76900 6.94171 7.04740 8.33853 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.004346 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.485304 B = 6440.595007 C = 8529.056825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.071 4.071 4 H 0.092 0.908 5 C -0.152 4.152 6 C 0.092 3.908 7 H 0.111 0.889 8 O -0.330 6.330 9 C 0.468 3.532 10 O -0.526 6.526 11 C -0.040 4.040 12 C -0.205 4.205 13 C -0.086 4.086 14 C -0.243 4.243 15 C -0.111 4.111 16 C -0.190 4.190 17 C 0.102 3.898 18 C -0.484 4.484 19 H 0.072 0.928 20 C 0.040 3.960 21 N -0.821 5.821 22 Si 0.970 3.030 23 H -0.255 1.255 24 H -0.267 1.267 25 H -0.263 1.263 26 C 0.453 3.547 27 O -0.526 6.526 28 O -0.343 6.343 29 C 0.023 3.977 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.288 0.712 45 H 0.142 0.858 46 H 0.052 0.948 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 12.794 5.695 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.090 4.090 4 H 0.110 0.890 5 C -0.209 4.209 6 C 0.035 3.965 7 H 0.129 0.871 8 O -0.247 6.247 9 C 0.312 3.688 10 O -0.413 6.413 11 C -0.077 4.077 12 C -0.206 4.206 13 C -0.104 4.104 14 C -0.262 4.262 15 C -0.129 4.129 16 C -0.209 4.209 17 C 0.100 3.900 18 C -0.513 4.513 19 H 0.091 0.909 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.791 3.209 23 H -0.179 1.179 24 H -0.192 1.192 25 H -0.187 1.187 26 C 0.296 3.704 27 O -0.415 6.415 28 O -0.259 6.259 29 C -0.070 4.070 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.160 0.840 46 H 0.071 0.929 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.942 12.741 5.675 19.027 hybrid contribution 0.427 -0.474 0.218 0.674 sum -12.515 12.267 5.893 18.488 Atomic orbital electron populations 1.21768 0.93098 1.02424 1.02914 1.21592 0.98133 0.94171 1.02310 1.21285 0.86286 0.99483 1.01931 0.88985 1.22049 1.03405 1.01262 0.94138 1.22587 0.99476 0.86452 0.88007 0.87089 1.86686 1.37487 1.62741 1.37805 1.24600 0.78063 0.74778 0.91320 1.90620 1.55462 1.58454 1.36777 1.20009 0.96265 0.99468 0.91919 1.19417 0.92836 0.98029 1.10353 1.20732 0.92657 0.97982 0.99072 1.20698 0.96795 0.97574 1.11169 1.20988 0.97445 0.95300 0.99154 1.21316 0.92613 1.00648 1.06350 1.17707 0.93484 0.91051 0.87794 1.19640 0.97346 0.91836 1.42479 0.90949 1.26670 0.99046 0.98551 0.93319 1.69866 1.32319 1.09671 1.32822 0.85385 0.78461 0.77736 0.79368 1.17918 1.19176 1.18702 1.24130 0.75599 0.89417 0.81211 1.90669 1.40673 1.74377 1.35759 1.86568 1.73554 1.27277 1.38494 1.23662 0.99342 0.77903 1.06050 0.92330 0.90788 0.92031 0.92608 0.91911 0.90752 0.88858 0.91837 0.86403 0.86810 0.87040 0.86611 0.87297 0.88092 0.90133 0.83982 0.92898 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.67 71.98 0.70 -1.59 16 2 C -0.12 -2.70 5.33 30.60 0.16 -2.53 16 3 C -0.07 -1.53 2.18 -10.80 -0.02 -1.56 16 4 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 5 C -0.15 -2.43 8.42 71.98 0.61 -1.82 16 6 C 0.09 2.76 2.07 29.85 0.06 2.82 16 7 H 0.11 3.59 7.16 -2.39 -0.02 3.57 16 8 O -0.33 -11.82 8.67 -45.01 -0.39 -12.21 16 9 C 0.47 19.75 7.56 71.24 0.54 20.29 16 10 O -0.53 -25.60 15.25 21.96 0.34 -25.27 16 11 C -0.04 -1.64 5.29 29.10 0.15 -1.48 16 12 C -0.20 -10.06 4.43 -19.41 -0.09 -10.15 16 13 C -0.09 -4.00 9.66 22.22 0.21 -3.79 16 14 C -0.24 -11.18 10.05 22.46 0.23 -10.95 16 15 C -0.11 -5.40 10.02 22.22 0.22 -5.18 16 16 C -0.19 -10.37 8.68 22.73 0.20 -10.17 16 17 C 0.10 5.56 5.56 -21.29 -0.12 5.44 16 18 C -0.48 -25.72 8.14 23.46 0.19 -25.53 16 19 H 0.07 3.73 6.68 -2.91 -0.02 3.71 16 20 C 0.04 1.98 5.16 85.26 0.44 2.42 16 21 N -0.82 -42.68 10.97 21.82 0.24 -42.44 16 22 Si 0.97 37.94 29.59 68.60 2.03 39.97 16 23 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 24 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 C 0.45 13.96 7.11 71.24 0.51 14.46 16 27 O -0.53 -19.48 16.26 28.32 0.46 -19.02 16 28 O -0.34 -8.14 7.78 -51.38 -0.40 -8.54 16 29 C 0.02 0.40 10.56 113.37 1.20 1.59 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.91 6.56 -2.39 -0.02 0.89 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 1.44 7.53 -2.38 -0.02 1.42 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.20 5.53 -2.39 -0.01 1.19 16 36 H 0.09 1.06 6.57 -2.39 -0.02 1.05 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 4.16 8.05 -2.39 -0.02 4.14 16 39 H 0.11 4.58 7.06 -2.39 -0.02 4.56 16 40 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 41 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 43 H 0.10 5.72 6.22 -2.91 -0.02 5.70 16 44 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 45 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 47 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 Total: -1.00 -69.07 388.69 8.43 -60.64 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.97 Total: 34.57 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 5.19 Total: -27.72 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.24 Total: -42.44 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: 0.01 Total: -65.03 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -69.07 8.43 -60.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.055 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -4.14 seconds