Wall clock time and date at job start Tue Mar 31 2020 17:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46945 * 2 1 4 4 H 1.08998 * 109.46813 * 306.22464 * 3 2 1 5 5 C 1.52995 * 109.46983 * 66.22511 * 3 2 1 6 6 C 1.53003 * 109.47100 * 186.22575 * 3 2 1 7 7 H 1.09007 * 109.46891 * 54.12929 * 6 3 2 8 8 O 1.45195 * 109.47227 * 294.13347 * 6 3 2 9 9 C 1.34228 * 117.00421 * 149.99919 * 8 6 3 10 10 O 1.20828 * 119.99383 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00590 * 180.02562 * 9 8 6 12 12 C 1.50693 * 109.47646 * 180.02562 * 11 9 8 13 13 C 1.37646 * 120.12651 * 264.99714 * 12 11 9 14 14 C 1.38613 * 120.25033 * 180.29413 * 13 12 11 15 15 C 1.38663 * 120.49601 * 359.44522 * 14 13 12 16 16 C 1.37595 * 120.25136 * 0.55310 * 15 14 13 17 17 C 1.40695 * 120.13350 * 85.01478 * 12 11 9 18 18 C 1.41397 * 120.23934 * 359.95885 * 17 12 11 19 19 H 1.07995 * 120.00100 * 332.89599 * 18 17 12 20 20 C 1.39949 * 119.99970 * 152.89121 * 18 17 12 21 21 N 1.30824 * 119.99630 * 347.67434 * 20 18 17 22 22 Si 1.86793 * 120.00245 * 167.67028 * 20 18 17 23 23 H 1.48506 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47125 * 120.00323 * 22 20 18 25 25 H 1.48498 * 109.47428 * 240.00280 * 22 20 18 26 26 C 1.50692 * 109.47162 * 174.12962 * 6 3 2 27 27 O 1.20831 * 119.99601 * 113.83736 * 26 6 3 28 28 O 1.34230 * 120.00412 * 293.83892 * 26 6 3 29 29 C 1.45201 * 117.00142 * 179.97438 * 28 26 6 30 30 H 1.09003 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47021 * 299.99968 * 1 2 3 32 32 H 1.08999 * 109.47879 * 59.99565 * 1 2 3 33 33 H 1.08996 * 109.46928 * 240.00373 * 2 1 3 34 34 H 1.08996 * 109.47703 * 119.99942 * 2 1 3 35 35 H 1.09002 * 109.46909 * 60.00226 * 5 3 2 36 36 H 1.09003 * 109.46673 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47421 * 299.99709 * 5 3 2 38 38 H 1.09000 * 109.47383 * 59.99650 * 11 9 8 39 39 H 1.09003 * 109.46333 * 300.00343 * 11 9 8 40 40 H 1.08007 * 119.87253 * 0.02562 * 13 12 11 41 41 H 1.07994 * 119.74904 * 179.70765 * 14 13 12 42 42 H 1.08000 * 119.86793 * 180.30380 * 15 14 13 43 43 H 1.07998 * 120.12561 * 179.74772 * 16 15 14 44 44 H 0.97003 * 119.99822 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.46991 * 59.99768 * 29 28 26 46 46 H 1.08994 * 109.47215 * 180.02562 * 29 28 26 47 47 H 1.08997 * 109.47227 * 300.00134 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5884 1.9875 -0.8290 5 6 1.6616 2.1172 1.3201 6 6 3.5619 1.4455 -0.1564 7 1 3.8371 0.8744 -1.0433 8 8 4.1701 0.8419 1.0157 9 6 5.3388 0.2063 0.8370 10 8 5.8368 0.1556 -0.2627 11 6 6.0291 -0.4450 2.0076 12 6 7.3122 -1.0839 1.5423 13 6 7.3374 -2.4187 1.2072 14 6 8.5176 -3.0104 0.7847 15 6 9.6820 -2.2643 0.6836 16 6 9.6801 -0.9284 1.0133 17 6 8.4890 -0.3185 1.4490 18 6 8.4749 1.0537 1.7900 19 1 7.5622 1.6236 1.6982 20 6 9.6438 1.6733 2.2466 21 7 10.6779 0.9482 2.5878 22 14 9.7274 3.5353 2.3688 23 1 8.4352 4.1189 1.9271 24 1 9.9918 3.9277 3.7764 25 1 10.8214 4.0398 1.5005 26 6 4.0493 2.8640 -0.3012 27 8 4.7401 3.3562 0.5594 28 8 3.7161 3.5809 -1.3860 29 6 4.2207 4.9405 -1.4582 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3635 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.1131 1.5722 2.1490 36 1 2.0253 3.1447 1.3202 37 1 0.5774 2.1152 1.4315 38 1 5.3778 -1.2070 2.4356 39 1 6.2519 0.3085 2.7631 40 1 6.4352 -3.0083 1.2780 41 1 8.5293 -4.0594 0.5284 42 1 10.5947 -2.7345 0.3486 43 1 10.5891 -0.3501 0.9376 44 1 11.4882 1.3777 2.9040 45 1 5.3105 4.9250 -1.4407 46 1 3.8783 5.4065 -2.3821 47 1 3.8517 5.5107 -0.6057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922589710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:44 Heat of formation + Delta-G solvation = -169.528398 kcal Electronic energy + Delta-G solvation = -29921.716908 eV Core-core repulsion = 25841.045031 eV Total energy + Delta-G solvation = -4080.671877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -40.95385 -39.66967 -37.83129 -36.96598 -36.34035 -35.23388 -33.62368 -31.90506 -30.80372 -29.47038 -28.49221 -27.42490 -26.56855 -25.05139 -24.31675 -21.95968 -20.97629 -20.89459 -19.95490 -19.39221 -17.77124 -17.41762 -17.18244 -16.83954 -16.32627 -15.73537 -15.46799 -15.11983 -14.89188 -14.49654 -14.39904 -13.89770 -13.65632 -13.51336 -13.24809 -13.11811 -12.80664 -12.58802 -12.35512 -12.17882 -12.00907 -11.82133 -11.65881 -11.54282 -11.38397 -11.17823 -11.13325 -11.02232 -10.98459 -10.89815 -10.78645 -10.72671 -10.68244 -10.35701 -10.01506 -9.81376 -9.52604 -9.37309 -9.19569 -7.37099 -7.30676 -6.71403 -4.37171 2.19761 2.29446 2.72714 2.88193 2.96865 3.10471 3.21191 3.26258 3.33674 3.98716 4.36922 4.52362 4.66682 4.71641 4.86863 5.03692 5.04992 5.14590 5.23616 5.28907 5.38699 5.45864 5.46247 5.53985 5.72909 5.73931 5.83335 5.86902 5.93612 5.95552 6.02702 6.18136 6.24567 6.25663 6.32624 6.40409 6.48418 6.69038 6.85118 7.09762 7.27581 7.39721 7.62731 7.72872 7.87901 8.06013 8.10521 8.29135 8.35897 8.65156 8.90861 8.98338 10.21359 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.004467 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.399766 B = 6266.033761 C = 8093.682247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.079 4.079 4 H 0.097 0.903 5 C -0.150 4.150 6 C 0.102 3.898 7 H 0.119 0.881 8 O -0.331 6.331 9 C 0.460 3.540 10 O -0.490 6.490 11 C -0.038 4.038 12 C -0.196 4.196 13 C -0.077 4.077 14 C -0.239 4.239 15 C -0.105 4.105 16 C -0.156 4.156 17 C 0.129 3.871 18 C -0.454 4.454 19 H 0.076 0.924 20 C 0.077 3.923 21 N -0.796 5.796 22 Si 0.901 3.099 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.272 1.272 26 C 0.446 3.554 27 O -0.480 6.480 28 O -0.359 6.359 29 C 0.035 3.965 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.279 0.721 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 3.401 -4.139 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.097 4.097 4 H 0.115 0.885 5 C -0.207 4.207 6 C 0.045 3.955 7 H 0.136 0.864 8 O -0.249 6.249 9 C 0.303 3.697 10 O -0.374 6.374 11 C -0.076 4.076 12 C -0.198 4.198 13 C -0.095 4.095 14 C -0.258 4.258 15 C -0.124 4.124 16 C -0.175 4.175 17 C 0.127 3.873 18 C -0.484 4.484 19 H 0.094 0.906 20 C -0.140 4.140 21 N -0.422 5.422 22 Si 0.725 3.275 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.197 1.197 26 C 0.286 3.714 27 O -0.364 6.364 28 O -0.276 6.276 29 C -0.059 4.059 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.154 3.618 -4.131 17.063 hybrid contribution 0.481 1.149 -0.090 1.249 sum -15.674 4.768 -4.221 16.918 Atomic orbital electron populations 1.21798 0.95270 1.01822 1.01934 1.21582 0.96212 0.94825 1.03213 1.21325 0.89098 0.98717 1.00576 0.88465 1.21872 1.01503 1.00347 0.97010 1.22073 0.94205 0.87636 0.91592 0.86384 1.86738 1.37362 1.64423 1.36405 1.24744 0.77742 0.75009 0.92211 1.90642 1.63208 1.56531 1.27010 1.19996 0.94312 0.99775 0.93494 1.19057 0.93582 0.93423 1.13691 1.20313 0.96149 0.94059 0.98985 1.20317 0.93939 0.98065 1.13518 1.20719 0.96152 0.95061 1.00439 1.21379 0.99417 0.93871 1.02830 1.17374 0.90289 0.92521 0.87124 1.19599 0.96213 0.94511 1.38078 0.90594 1.25864 0.94901 1.00477 0.92756 1.69807 1.03728 1.37382 1.31276 0.86347 0.79726 0.82781 0.78612 1.18089 1.19820 1.19743 1.24025 0.78197 0.89384 0.79751 1.90751 1.33860 1.70952 1.40860 1.86456 1.70311 1.27511 1.43332 1.23280 1.00431 0.79101 1.03055 0.92527 0.92321 0.92727 0.91562 0.90711 0.90863 0.93064 0.91805 0.89181 0.87199 0.89522 0.89503 0.89455 0.86123 0.90986 0.91632 0.88015 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.69 37.15 0.36 -0.77 16 2 C -0.12 -1.16 5.23 -26.73 -0.14 -1.30 16 3 C -0.08 -0.85 2.19 -90.62 -0.20 -1.05 16 4 H 0.10 0.91 8.13 -51.93 -0.42 0.48 16 5 C -0.15 -1.61 8.59 37.16 0.32 -1.29 16 6 C 0.10 1.54 2.13 -27.89 -0.06 1.48 16 7 H 0.12 1.79 7.15 -51.92 -0.37 1.42 16 8 O -0.33 -5.77 8.20 -45.89 -0.38 -6.14 16 9 C 0.46 9.47 7.55 36.00 0.27 9.74 16 10 O -0.49 -11.55 15.25 -18.75 -0.29 -11.84 16 11 C -0.04 -0.79 5.30 -29.04 -0.15 -0.94 16 12 C -0.20 -4.73 4.43 -103.91 -0.46 -5.20 16 13 C -0.08 -1.75 9.66 -39.66 -0.38 -2.13 16 14 C -0.24 -5.49 10.05 -39.29 -0.39 -5.88 16 15 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 16 C -0.16 -4.17 8.67 -38.87 -0.34 -4.51 16 17 C 0.13 3.50 5.56 -106.83 -0.59 2.90 16 18 C -0.45 -12.38 8.13 -37.74 -0.31 -12.69 16 19 H 0.08 2.10 6.70 -52.49 -0.35 1.74 16 20 C 0.08 2.00 5.24 -17.34 -0.09 1.91 16 21 N -0.80 -20.88 10.82 55.55 0.60 -20.28 16 22 Si 0.90 19.87 29.58 -169.99 -5.03 14.85 16 23 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C 0.45 7.49 6.27 36.00 0.23 7.72 16 27 O -0.48 -9.81 16.26 -25.39 -0.41 -10.22 16 28 O -0.36 -5.06 10.55 -39.26 -0.41 -5.47 16 29 C 0.03 0.40 10.56 101.05 1.07 1.46 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 6.61 -51.93 -0.34 0.07 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 35 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 36 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 37 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 38 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 39 H 0.11 2.29 7.08 -51.93 -0.37 1.92 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.33 6.15 -52.49 -0.32 3.01 16 44 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 45 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -32.20 391.99 -8.35 -40.55 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.07 Total: 6.14 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.27 Total: -13.49 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.60 Total: -20.28 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.49 Total: -33.68 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.20 -8.35 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.975 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds