Wall clock time and date at job start Tue Mar 31 2020 17:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46945 * 2 1 4 4 H 1.08998 * 109.46813 * 306.22464 * 3 2 1 5 5 C 1.52995 * 109.46983 * 66.22511 * 3 2 1 6 6 C 1.53003 * 109.47100 * 186.22575 * 3 2 1 7 7 H 1.09007 * 109.46891 * 54.12929 * 6 3 2 8 8 O 1.45195 * 109.47227 * 294.13347 * 6 3 2 9 9 C 1.34228 * 117.00421 * 149.99919 * 8 6 3 10 10 O 1.20828 * 119.99383 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00590 * 180.02562 * 9 8 6 12 12 C 1.50693 * 109.47646 * 180.02562 * 11 9 8 13 13 C 1.37646 * 120.12651 * 264.99714 * 12 11 9 14 14 C 1.38613 * 120.25033 * 180.29413 * 13 12 11 15 15 C 1.38663 * 120.49601 * 359.44522 * 14 13 12 16 16 C 1.37595 * 120.25136 * 0.55310 * 15 14 13 17 17 C 1.40695 * 120.13350 * 85.01478 * 12 11 9 18 18 C 1.41397 * 120.23934 * 359.95885 * 17 12 11 19 19 H 1.07995 * 120.00100 * 332.89599 * 18 17 12 20 20 C 1.39949 * 119.99970 * 152.89121 * 18 17 12 21 21 N 1.30824 * 119.99630 * 347.67434 * 20 18 17 22 22 Si 1.86793 * 120.00245 * 167.67028 * 20 18 17 23 23 H 1.48506 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47125 * 120.00323 * 22 20 18 25 25 H 1.48498 * 109.47428 * 240.00280 * 22 20 18 26 26 C 1.50692 * 109.47162 * 174.12962 * 6 3 2 27 27 O 1.20831 * 119.99601 * 113.83736 * 26 6 3 28 28 O 1.34230 * 120.00412 * 293.83892 * 26 6 3 29 29 C 1.45201 * 117.00142 * 179.97438 * 28 26 6 30 30 H 1.09003 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47021 * 299.99968 * 1 2 3 32 32 H 1.08999 * 109.47879 * 59.99565 * 1 2 3 33 33 H 1.08996 * 109.46928 * 240.00373 * 2 1 3 34 34 H 1.08996 * 109.47703 * 119.99942 * 2 1 3 35 35 H 1.09002 * 109.46909 * 60.00226 * 5 3 2 36 36 H 1.09003 * 109.46673 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47421 * 299.99709 * 5 3 2 38 38 H 1.09000 * 109.47383 * 59.99650 * 11 9 8 39 39 H 1.09003 * 109.46333 * 300.00343 * 11 9 8 40 40 H 1.08007 * 119.87253 * 0.02562 * 13 12 11 41 41 H 1.07994 * 119.74904 * 179.70765 * 14 13 12 42 42 H 1.08000 * 119.86793 * 180.30380 * 15 14 13 43 43 H 1.07998 * 120.12561 * 179.74772 * 16 15 14 44 44 H 0.97003 * 119.99822 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.46991 * 59.99768 * 29 28 26 46 46 H 1.08994 * 109.47215 * 180.02562 * 29 28 26 47 47 H 1.08997 * 109.47227 * 300.00134 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5884 1.9875 -0.8290 5 6 1.6616 2.1172 1.3201 6 6 3.5619 1.4455 -0.1564 7 1 3.8371 0.8744 -1.0433 8 8 4.1701 0.8419 1.0157 9 6 5.3388 0.2063 0.8370 10 8 5.8368 0.1556 -0.2627 11 6 6.0291 -0.4450 2.0076 12 6 7.3122 -1.0839 1.5423 13 6 7.3374 -2.4187 1.2072 14 6 8.5176 -3.0104 0.7847 15 6 9.6820 -2.2643 0.6836 16 6 9.6801 -0.9284 1.0133 17 6 8.4890 -0.3185 1.4490 18 6 8.4749 1.0537 1.7900 19 1 7.5622 1.6236 1.6982 20 6 9.6438 1.6733 2.2466 21 7 10.6779 0.9482 2.5878 22 14 9.7274 3.5353 2.3688 23 1 8.4352 4.1189 1.9271 24 1 9.9918 3.9277 3.7764 25 1 10.8214 4.0398 1.5005 26 6 4.0493 2.8640 -0.3012 27 8 4.7401 3.3562 0.5594 28 8 3.7161 3.5809 -1.3860 29 6 4.2207 4.9405 -1.4582 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3635 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.1131 1.5722 2.1490 36 1 2.0253 3.1447 1.3202 37 1 0.5774 2.1152 1.4315 38 1 5.3778 -1.2070 2.4356 39 1 6.2519 0.3085 2.7631 40 1 6.4352 -3.0083 1.2780 41 1 8.5293 -4.0594 0.5284 42 1 10.5947 -2.7345 0.3486 43 1 10.5891 -0.3501 0.9376 44 1 11.4882 1.3777 2.9040 45 1 5.3105 4.9250 -1.4407 46 1 3.8783 5.4065 -2.3821 47 1 3.8517 5.5107 -0.6057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922589710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:35 Heat of formation + Delta-G solvation = -184.929997 kcal Electronic energy + Delta-G solvation = -29922.384772 eV Core-core repulsion = 25841.045031 eV Total energy + Delta-G solvation = -4081.339741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 13.36 seconds Orbital eigenvalues (eV) -42.32096 -41.14308 -39.53216 -38.32958 -37.61209 -36.52112 -35.55930 -33.65153 -31.77988 -31.38519 -29.47896 -28.96301 -27.80540 -26.94471 -25.17308 -23.48836 -22.85100 -22.07996 -21.23873 -20.95018 -19.15214 -19.05315 -18.90603 -18.13860 -17.59179 -17.34532 -17.13370 -16.45104 -16.26285 -15.86597 -15.52340 -15.44438 -15.37719 -14.79995 -14.45331 -14.32215 -14.26978 -14.10939 -13.63427 -13.42358 -13.26923 -13.06753 -12.97171 -12.94054 -12.87299 -12.82722 -12.62809 -12.57496 -12.39837 -12.18730 -12.15966 -11.98115 -11.76318 -11.54800 -11.46756 -11.39087 -11.27491 -11.20823 -11.11769 -9.25668 -9.24752 -8.64235 -6.38661 0.80150 0.88220 1.01142 1.12932 1.27875 1.42447 1.43796 1.44787 1.88594 2.15077 2.72801 3.33914 3.47354 3.66551 3.69483 3.89769 4.01827 4.14125 4.19070 4.19973 4.31911 4.33462 4.47065 4.55039 4.56927 4.60539 4.65942 4.68679 4.73216 4.73649 4.94041 4.98271 5.05643 5.12268 5.14217 5.19231 5.22532 5.27998 5.34291 5.44952 5.49117 5.53153 5.71994 5.98248 6.11242 6.18005 6.36151 6.43293 6.68228 6.78677 6.92870 7.03891 8.30894 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.004467 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.399766 B = 6266.033761 C = 8093.682247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.071 4.071 4 H 0.120 0.880 5 C -0.148 4.148 6 C 0.095 3.905 7 H 0.118 0.882 8 O -0.325 6.325 9 C 0.467 3.533 10 O -0.527 6.527 11 C -0.040 4.040 12 C -0.201 4.201 13 C -0.082 4.082 14 C -0.235 4.235 15 C -0.113 4.113 16 C -0.188 4.188 17 C 0.097 3.903 18 C -0.484 4.484 19 H 0.058 0.942 20 C 0.041 3.959 21 N -0.823 5.823 22 Si 0.963 3.037 23 H -0.277 1.277 24 H -0.256 1.256 25 H -0.261 1.261 26 C 0.445 3.555 27 O -0.526 6.526 28 O -0.352 6.352 29 C 0.027 3.973 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.287 0.713 45 H 0.047 0.953 46 H 0.146 0.854 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.218 2.800 -4.638 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.089 4.089 4 H 0.138 0.862 5 C -0.205 4.205 6 C 0.039 3.961 7 H 0.136 0.864 8 O -0.242 6.242 9 C 0.312 3.688 10 O -0.414 6.414 11 C -0.077 4.077 12 C -0.202 4.202 13 C -0.100 4.100 14 C -0.254 4.254 15 C -0.131 4.131 16 C -0.208 4.208 17 C 0.095 3.905 18 C -0.514 4.514 19 H 0.077 0.923 20 C -0.173 4.173 21 N -0.449 5.449 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.180 1.180 25 H -0.186 1.186 26 C 0.288 3.712 27 O -0.414 6.414 28 O -0.268 6.268 29 C -0.066 4.066 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.151 0.849 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.163 0.837 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.628 3.009 -4.632 19.430 hybrid contribution 1.143 1.274 -0.021 1.712 sum -17.485 4.283 -4.653 18.593 Atomic orbital electron populations 1.21776 0.93259 1.02603 1.02763 1.21586 0.97875 0.93469 1.02781 1.21453 0.85695 1.00211 1.01517 0.86225 1.21868 1.03256 0.99069 0.96326 1.22554 0.96618 0.86419 0.90556 0.86424 1.86698 1.35961 1.63876 1.37622 1.24602 0.78158 0.74610 0.91462 1.90621 1.64346 1.58121 1.28350 1.20020 0.93834 1.00634 0.93234 1.19463 0.94097 0.94239 1.12414 1.20774 0.97702 0.93759 0.97808 1.20782 0.93297 0.99622 1.11728 1.21018 0.97902 0.94273 0.99912 1.21364 0.99020 0.95208 1.05200 1.17716 0.91679 0.93040 0.88094 1.19606 0.96354 0.95202 1.40265 0.92329 1.26500 0.94379 1.04246 0.92214 1.69843 1.04258 1.38890 1.31928 0.85445 0.78789 0.77807 0.79484 1.20124 1.17971 1.18563 1.24426 0.77133 0.90077 0.79574 1.90735 1.36028 1.72108 1.42571 1.86452 1.69815 1.28746 1.41826 1.23627 0.99549 0.77823 1.05624 0.91847 0.91727 0.91644 0.91551 0.91699 0.92273 0.94558 0.88883 0.84929 0.88208 0.85686 0.86035 0.87287 0.88149 0.90219 0.93435 0.83651 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.69 71.98 0.70 -1.04 16 2 C -0.12 -2.02 5.23 30.59 0.16 -1.86 16 3 C -0.07 -1.41 2.19 -10.79 -0.02 -1.43 16 4 H 0.12 1.89 8.13 -2.39 -0.02 1.87 16 5 C -0.15 -2.94 8.59 71.98 0.62 -2.32 16 6 C 0.10 2.84 2.13 29.85 0.06 2.90 16 7 H 0.12 3.55 7.15 -2.38 -0.02 3.53 16 8 O -0.32 -11.34 8.20 -45.06 -0.37 -11.71 16 9 C 0.47 19.42 7.55 71.24 0.54 19.96 16 10 O -0.53 -25.38 15.25 21.96 0.33 -25.05 16 11 C -0.04 -1.64 5.30 29.10 0.15 -1.48 16 12 C -0.20 -9.71 4.43 -19.41 -0.09 -9.79 16 13 C -0.08 -3.58 9.66 22.22 0.21 -3.37 16 14 C -0.24 -10.30 10.05 22.46 0.23 -10.07 16 15 C -0.11 -5.43 10.02 22.22 0.22 -5.21 16 16 C -0.19 -10.43 8.67 22.73 0.20 -10.23 16 17 C 0.10 5.41 5.56 -21.29 -0.12 5.30 16 18 C -0.48 -27.69 8.13 23.46 0.19 -27.50 16 19 H 0.06 3.44 6.70 -2.91 -0.02 3.42 16 20 C 0.04 2.21 5.24 85.26 0.45 2.66 16 21 N -0.82 -44.68 10.82 21.83 0.24 -44.44 16 22 Si 0.96 42.36 29.58 68.60 2.03 44.39 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 C 0.45 15.12 6.27 71.23 0.45 15.56 16 27 O -0.53 -22.32 16.26 28.29 0.46 -21.86 16 28 O -0.35 -9.68 10.55 -51.42 -0.54 -10.22 16 29 C 0.03 0.58 10.56 113.37 1.20 1.78 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.70 6.61 -2.38 -0.02 0.68 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.23 8.01 -2.39 -0.02 1.21 16 35 H 0.06 1.34 7.53 -2.39 -0.02 1.32 16 36 H 0.04 0.82 7.41 -2.39 -0.02 0.81 16 37 H 0.09 1.29 6.61 -2.39 -0.02 1.28 16 38 H 0.13 4.15 8.05 -2.39 -0.02 4.13 16 39 H 0.10 4.29 7.08 -2.39 -0.02 4.27 16 40 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 41 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 43 H 0.10 5.84 6.15 -2.91 -0.02 5.82 16 44 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 45 H 0.05 1.21 8.13 -2.38 -0.02 1.19 16 46 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 Total: -1.00 -73.52 391.99 8.26 -65.26 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.97 Total: 29.80 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 5.14 Total: -26.16 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.24 Total: -44.44 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -0.12 Total: -68.84 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -73.52 8.26 -65.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922589710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.671 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.36 seconds