Wall clock time and date at job start Tue Mar 31 2020 23:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48497 * 109.46924 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47094 * 300.00395 * 3 2 1 6 6 H 1.48499 * 109.47023 * 60.00512 * 3 2 1 7 7 C 1.39893 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00122 * 175.55098 * 7 2 1 9 9 C 1.41159 * 119.99384 * 355.55705 * 7 2 1 10 10 C 1.40875 * 120.15781 * 214.77808 * 9 7 2 11 11 C 1.36377 * 119.82574 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16794 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83095 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99969 * 35.29460 * 13 12 11 15 15 O 1.21583 * 120.00147 * 355.70838 * 14 13 12 16 16 N 1.34774 * 119.99888 * 175.71453 * 14 13 12 17 17 C 1.46497 * 120.00039 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47083 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.47461 * 65.00278 * 18 17 16 20 20 C 1.42898 * 114.00505 * 180.02562 * 19 18 17 21 21 C 1.53183 * 109.53970 * 269.55110 * 20 19 18 22 22 C 1.53089 * 109.16291 * 183.15308 * 21 20 19 23 23 O 1.42894 * 109.41889 * 57.60750 * 22 21 20 24 24 C 1.42909 * 114.10060 * 298.84619 * 23 22 21 25 25 C 1.53097 * 109.41376 * 61.15252 * 24 23 22 26 26 C 1.39473 * 120.33461 * 0.25219 * 12 11 10 27 27 C 1.36379 * 120.16635 * 359.44291 * 26 12 11 28 28 H 0.96993 * 120.00772 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.08863 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.91161 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00054 * 215.29670 * 13 12 11 32 32 H 0.97006 * 119.99979 * 359.97438 * 16 14 13 33 33 H 1.09003 * 109.47060 * 60.00045 * 17 16 14 34 34 H 1.09001 * 109.47306 * 299.99733 * 17 16 14 35 35 H 1.09002 * 109.47295 * 304.99904 * 18 17 16 36 36 H 1.09001 * 109.47111 * 185.00117 * 18 17 16 37 37 H 1.08994 * 109.61416 * 29.77241 * 20 19 18 38 38 H 1.08998 * 109.52460 * 303.05978 * 21 20 19 39 39 H 1.09005 * 109.51909 * 63.24515 * 21 20 19 40 40 H 1.09000 * 109.48046 * 297.62592 * 22 21 20 41 41 H 1.09001 * 109.48302 * 177.59721 * 22 21 20 42 42 H 1.08997 * 109.47642 * 301.17319 * 24 23 22 43 43 H 1.09001 * 109.49021 * 181.14240 * 24 23 22 44 44 H 1.08998 * 109.51895 * 182.48964 * 25 24 23 45 45 H 1.09000 * 109.52375 * 62.29956 * 25 24 23 46 46 H 1.08000 * 119.91859 * 179.70188 * 26 12 11 47 47 H 1.08003 * 120.08237 * 180.25494 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0084 -1.2114 -0.0005 8 1 3.0858 -1.2127 -0.0731 9 6 1.3057 -2.4321 0.0936 10 6 1.8652 -3.5185 0.7946 11 6 1.1807 -4.6949 0.8809 12 6 -0.0699 -4.8241 0.2769 13 7 -0.7624 -6.0286 0.3689 14 6 -0.6806 -6.7688 1.4922 15 8 0.0584 -6.4250 2.3944 16 7 -1.4179 -7.8903 1.6154 17 6 -1.3286 -8.6952 2.8362 18 6 -2.2599 -9.9035 2.7197 19 8 -1.8028 -10.7578 1.6694 20 6 -2.6077 -11.9225 1.4755 21 6 -2.0709 -13.0662 2.3418 22 6 -2.8899 -14.3304 2.0688 23 8 -2.8231 -14.6485 0.6773 24 6 -3.3547 -13.6354 -0.1791 25 6 -2.5543 -12.3432 0.0036 26 6 -0.6277 -3.7548 -0.4237 27 6 0.0422 -2.5702 -0.5133 28 1 -0.4851 0.8399 0.0004 29 1 2.8336 -3.4201 1.2624 30 1 1.6085 -5.5288 1.4175 31 1 -1.3037 -6.3349 -0.3754 32 1 -2.0077 -8.1645 0.8958 33 1 -1.6247 -8.0899 3.6930 34 1 -0.3028 -9.0384 2.9709 35 1 -3.2710 -9.5627 2.4968 36 1 -2.2610 -10.4534 3.6608 37 1 -3.6385 -11.7057 1.7557 38 1 -1.0250 -13.2495 2.0958 39 1 -2.1566 -12.7968 3.3945 40 1 -3.9282 -14.1594 2.3530 41 1 -2.4853 -15.1585 2.6508 42 1 -4.3990 -13.4552 0.0758 43 1 -3.2849 -13.9626 -1.2165 44 1 -2.9857 -11.5569 -0.6158 45 1 -1.5181 -12.5119 -0.2896 46 1 -1.5943 -3.8638 -0.8929 47 1 -0.3929 -1.7418 -1.0527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927495549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:37 Heat of formation + Delta-G solvation = -103.224550 kcal Electronic energy + Delta-G solvation = -27539.265306 eV Core-core repulsion = 23493.761330 eV Total energy + Delta-G solvation = -4045.503975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 16.11 seconds Orbital eigenvalues (eV) -40.14870 -39.79440 -38.08662 -37.31708 -34.90170 -34.21967 -32.97488 -32.61027 -31.63961 -29.74343 -29.39863 -28.33956 -25.04474 -24.68454 -24.10937 -22.81774 -21.51122 -20.86313 -20.81206 -20.04292 -17.97330 -17.58350 -17.20454 -16.86467 -16.55904 -16.30899 -15.87070 -15.32655 -15.19018 -15.00553 -14.79745 -14.49710 -13.97131 -13.89722 -13.72263 -13.47279 -13.07072 -12.85290 -12.64879 -12.56076 -12.06249 -11.97254 -11.86582 -11.72907 -11.63417 -11.29931 -11.25136 -11.11152 -10.91733 -10.85950 -10.68093 -10.17810 -10.04534 -9.92581 -9.48098 -9.40303 -9.18955 -8.89376 -8.79088 -7.47542 -6.76742 -6.55624 -4.27610 2.71153 3.03640 3.12487 3.13204 3.14268 3.19103 3.23016 3.40057 3.76704 4.03030 4.21935 4.26062 4.44941 4.53419 4.64964 4.69151 4.70914 4.76896 4.84445 4.87284 4.95215 5.03686 5.12395 5.17475 5.32661 5.50142 5.55775 5.63923 5.68296 5.71982 5.78262 6.25056 6.49434 6.61772 6.67412 6.80073 6.83307 6.89782 7.11270 7.22011 7.33664 7.47577 7.71899 7.93300 8.03749 8.16267 8.37521 8.53889 8.70538 8.99315 8.99778 9.16291 10.35759 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.001670 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.214957 B =16764.979332 C =17041.417421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.096 3.904 10 C -0.203 4.203 11 C -0.087 4.087 12 C 0.026 3.974 13 N -0.668 5.668 14 C 0.695 3.305 15 O -0.580 6.580 16 N -0.748 5.748 17 C 0.144 3.856 18 C 0.050 3.950 19 O -0.374 6.374 20 C 0.089 3.911 21 C -0.180 4.180 22 C 0.063 3.937 23 O -0.382 6.382 24 C 0.064 3.936 25 C -0.155 4.155 26 C -0.124 4.124 27 C -0.140 4.140 28 H 0.276 0.724 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.391 0.609 32 H 0.394 0.606 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 -24.075 1.622 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.094 3.906 10 C -0.223 4.223 11 C -0.108 4.108 12 C -0.067 4.067 13 N -0.313 5.313 14 C 0.396 3.604 15 O -0.457 6.457 16 N -0.406 5.406 17 C 0.020 3.980 18 C -0.027 4.027 19 O -0.293 6.293 20 C 0.031 3.969 21 C -0.218 4.218 22 C -0.013 4.013 23 O -0.301 6.301 24 C -0.013 4.013 25 C -0.192 4.192 26 C -0.145 4.145 27 C -0.160 4.160 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.224 0.776 32 H 0.228 0.772 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.231 -23.729 2.314 25.944 hybrid contribution -0.664 0.753 -0.213 1.026 sum -10.894 -22.977 2.100 25.515 Atomic orbital electron populations 1.69773 1.07245 1.28443 1.38783 1.25861 0.94923 1.01085 0.92664 0.86165 0.80608 0.80979 0.78305 1.18623 1.20079 1.20062 1.19511 0.94710 0.90209 1.44845 0.90637 1.17725 0.92358 0.92053 0.88491 1.20813 1.01158 0.94928 1.05406 1.20436 0.92786 0.97945 0.99594 1.17083 0.93717 0.84997 1.10923 1.42106 1.51724 1.22126 1.15386 1.16014 0.81237 0.80051 0.83139 1.90906 1.42211 1.71697 1.40881 1.44992 1.48570 1.26303 1.20690 1.21119 1.00282 0.89176 0.87449 1.22866 0.97561 0.91051 0.91229 1.88024 1.52980 1.33987 1.54284 1.22087 0.94004 0.85395 0.95430 1.22748 1.02343 0.95834 1.00860 1.22558 0.98939 0.97209 0.82638 1.87958 1.83239 1.42539 1.16359 1.22595 0.96013 0.87328 0.95376 1.22306 1.03174 0.98245 0.95502 1.20291 0.98389 0.93064 1.02744 1.21166 0.97302 0.95439 1.02097 0.91323 0.88646 0.87327 0.77570 0.77247 0.90174 0.90879 0.92539 0.91699 0.92065 0.89882 0.90615 0.93120 0.88466 0.93021 0.88157 0.89998 0.89878 0.89191 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.58 10.60 55.54 0.59 -20.99 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 3 Si 0.91 19.37 29.56 -169.99 -5.03 14.35 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.46 -12.58 9.02 -37.85 -0.34 -12.92 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 10 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 11 C -0.09 -2.17 8.61 -39.79 -0.34 -2.52 16 12 C 0.03 0.58 6.31 -83.57 -0.53 0.06 16 13 N -0.67 -12.18 5.31 -14.10 -0.07 -12.25 16 14 C 0.69 12.76 8.40 -86.92 -0.73 12.03 16 15 O -0.58 -13.20 13.76 5.29 0.07 -13.12 16 16 N -0.75 -9.76 5.51 -65.23 -0.36 -10.12 16 17 C 0.14 1.61 6.06 -4.04 -0.02 1.59 16 18 C 0.05 0.39 5.89 37.16 0.22 0.61 16 19 O -0.37 -3.42 9.94 -35.23 -0.35 -3.77 16 20 C 0.09 0.62 2.70 -26.55 -0.07 0.55 16 21 C -0.18 -1.16 5.76 -26.59 -0.15 -1.31 16 22 C 0.06 0.37 6.84 37.20 0.25 0.63 16 23 O -0.38 -3.05 10.77 -35.23 -0.38 -3.43 16 24 C 0.06 0.38 6.84 37.21 0.25 0.63 16 25 C -0.15 -1.03 5.79 -26.59 -0.15 -1.19 16 26 C -0.12 -2.89 9.90 -39.79 -0.39 -3.29 16 27 C -0.14 -3.67 8.61 -39.26 -0.34 -4.00 16 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 29 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.11 2.70 6.22 -52.49 -0.33 2.37 16 31 H 0.39 5.59 8.83 -40.82 -0.36 5.23 16 32 H 0.39 4.07 8.49 -40.82 -0.35 3.72 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.06 0.40 7.99 -51.93 -0.42 -0.02 16 37 H 0.06 0.35 7.79 -51.93 -0.40 -0.05 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.41 7.99 -51.93 -0.42 0.00 16 40 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.13 3.54 6.13 -52.48 -0.32 3.22 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -33.09 385.29 -10.35 -43.44 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -7.21 Total: 11.17 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.42 Total: -11.08 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.15 Total: -43.36 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.66 Total: -20.32 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.09 -10.35 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927495549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.788 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.11 seconds