Wall clock time and date at job start Tue Mar 31 2020 23:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48497 * 109.46924 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47094 * 300.00395 * 3 2 1 6 6 H 1.48499 * 109.47023 * 60.00512 * 3 2 1 7 7 C 1.39893 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00122 * 175.55098 * 7 2 1 9 9 C 1.41159 * 119.99384 * 355.55705 * 7 2 1 10 10 C 1.40875 * 120.15781 * 214.77808 * 9 7 2 11 11 C 1.36377 * 119.82574 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16794 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83095 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99969 * 35.29460 * 13 12 11 15 15 O 1.21583 * 120.00147 * 355.70838 * 14 13 12 16 16 N 1.34774 * 119.99888 * 175.71453 * 14 13 12 17 17 C 1.46497 * 120.00039 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47083 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.47461 * 65.00278 * 18 17 16 20 20 C 1.42898 * 114.00505 * 180.02562 * 19 18 17 21 21 C 1.53183 * 109.53970 * 269.55110 * 20 19 18 22 22 C 1.53089 * 109.16291 * 183.15308 * 21 20 19 23 23 O 1.42894 * 109.41889 * 57.60750 * 22 21 20 24 24 C 1.42909 * 114.10060 * 298.84619 * 23 22 21 25 25 C 1.53097 * 109.41376 * 61.15252 * 24 23 22 26 26 C 1.39473 * 120.33461 * 0.25219 * 12 11 10 27 27 C 1.36379 * 120.16635 * 359.44291 * 26 12 11 28 28 H 0.96993 * 120.00772 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.08863 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.91161 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00054 * 215.29670 * 13 12 11 32 32 H 0.97006 * 119.99979 * 359.97438 * 16 14 13 33 33 H 1.09003 * 109.47060 * 60.00045 * 17 16 14 34 34 H 1.09001 * 109.47306 * 299.99733 * 17 16 14 35 35 H 1.09002 * 109.47295 * 304.99904 * 18 17 16 36 36 H 1.09001 * 109.47111 * 185.00117 * 18 17 16 37 37 H 1.08994 * 109.61416 * 29.77241 * 20 19 18 38 38 H 1.08998 * 109.52460 * 303.05978 * 21 20 19 39 39 H 1.09005 * 109.51909 * 63.24515 * 21 20 19 40 40 H 1.09000 * 109.48046 * 297.62592 * 22 21 20 41 41 H 1.09001 * 109.48302 * 177.59721 * 22 21 20 42 42 H 1.08997 * 109.47642 * 301.17319 * 24 23 22 43 43 H 1.09001 * 109.49021 * 181.14240 * 24 23 22 44 44 H 1.08998 * 109.51895 * 182.48964 * 25 24 23 45 45 H 1.09000 * 109.52375 * 62.29956 * 25 24 23 46 46 H 1.08000 * 119.91859 * 179.70188 * 26 12 11 47 47 H 1.08003 * 120.08237 * 180.25494 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0084 -1.2114 -0.0005 8 1 3.0858 -1.2127 -0.0731 9 6 1.3057 -2.4321 0.0936 10 6 1.8652 -3.5185 0.7946 11 6 1.1807 -4.6949 0.8809 12 6 -0.0699 -4.8241 0.2769 13 7 -0.7624 -6.0286 0.3689 14 6 -0.6806 -6.7688 1.4922 15 8 0.0584 -6.4250 2.3944 16 7 -1.4179 -7.8903 1.6154 17 6 -1.3286 -8.6952 2.8362 18 6 -2.2599 -9.9035 2.7197 19 8 -1.8028 -10.7578 1.6694 20 6 -2.6077 -11.9225 1.4755 21 6 -2.0709 -13.0662 2.3418 22 6 -2.8899 -14.3304 2.0688 23 8 -2.8231 -14.6485 0.6773 24 6 -3.3547 -13.6354 -0.1791 25 6 -2.5543 -12.3432 0.0036 26 6 -0.6277 -3.7548 -0.4237 27 6 0.0422 -2.5702 -0.5133 28 1 -0.4851 0.8399 0.0004 29 1 2.8336 -3.4201 1.2624 30 1 1.6085 -5.5288 1.4175 31 1 -1.3037 -6.3349 -0.3754 32 1 -2.0077 -8.1645 0.8958 33 1 -1.6247 -8.0899 3.6930 34 1 -0.3028 -9.0384 2.9709 35 1 -3.2710 -9.5627 2.4968 36 1 -2.2610 -10.4534 3.6608 37 1 -3.6385 -11.7057 1.7557 38 1 -1.0250 -13.2495 2.0958 39 1 -2.1566 -12.7968 3.3945 40 1 -3.9282 -14.1594 2.3530 41 1 -2.4853 -15.1585 2.6508 42 1 -4.3990 -13.4552 0.0758 43 1 -3.2849 -13.9626 -1.2165 44 1 -2.9857 -11.5569 -0.6158 45 1 -1.5181 -12.5119 -0.2896 46 1 -1.5943 -3.8638 -0.8929 47 1 -0.3929 -1.7418 -1.0527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927495549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:23 Heat of formation + Delta-G solvation = -125.818720 kcal Electronic energy + Delta-G solvation = -27540.245062 eV Core-core repulsion = 23493.761330 eV Total energy + Delta-G solvation = -4046.483732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 16.46 seconds Orbital eigenvalues (eV) -41.40608 -40.57876 -39.31538 -38.55008 -36.30617 -35.73748 -34.67376 -33.38634 -32.09085 -31.48903 -31.00463 -29.77125 -26.72173 -25.34822 -24.61805 -23.88513 -23.14414 -22.55764 -21.68383 -21.34156 -19.48486 -19.11389 -18.31896 -18.10468 -17.17212 -17.06340 -16.94493 -16.72753 -16.31805 -15.91113 -15.80162 -15.68254 -15.49840 -14.92460 -14.82133 -14.53104 -14.42213 -14.09220 -13.97920 -13.68762 -13.53940 -13.25492 -13.20958 -12.85985 -12.75081 -12.63831 -12.47023 -12.37375 -12.21078 -11.80754 -11.77497 -11.37860 -11.33241 -11.24100 -11.02117 -10.66609 -10.65085 -10.47695 -10.07969 -9.44375 -8.66929 -8.48022 -6.30348 0.85992 1.16301 1.40487 1.47549 1.55785 1.79389 2.21239 2.26526 2.53277 2.83258 2.96968 3.40424 3.70567 3.72741 3.76639 3.96953 4.00000 4.12135 4.19193 4.27407 4.34536 4.41344 4.45226 4.52074 4.55230 4.67146 4.76492 4.77485 4.83227 4.85718 4.95403 5.06291 5.13237 5.15547 5.16921 5.22366 5.35058 5.45710 5.49310 5.71396 5.84097 6.05547 6.13808 6.23123 6.24734 6.27682 6.42070 6.70675 6.99212 7.03301 7.16932 7.66909 8.45029 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.001670 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.214957 B =16764.979332 C =17041.417421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.064 3.936 10 C -0.218 4.218 11 C -0.100 4.100 12 C 0.042 3.958 13 N -0.659 5.659 14 C 0.691 3.309 15 O -0.626 6.626 16 N -0.724 5.724 17 C 0.140 3.860 18 C 0.058 3.942 19 O -0.396 6.396 20 C 0.085 3.915 21 C -0.178 4.178 22 C 0.061 3.939 23 O -0.407 6.407 24 C 0.062 3.938 25 C -0.153 4.153 26 C -0.120 4.120 27 C -0.156 4.156 28 H 0.284 0.716 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.414 0.586 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.126 0.874 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 -24.977 1.597 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.529 4.529 8 H 0.089 0.911 9 C 0.061 3.939 10 C -0.238 4.238 11 C -0.120 4.120 12 C -0.052 4.052 13 N -0.307 5.307 14 C 0.392 3.608 15 O -0.507 6.507 16 N -0.382 5.382 17 C 0.016 3.984 18 C -0.018 4.018 19 O -0.316 6.316 20 C 0.028 3.972 21 C -0.216 4.216 22 C -0.015 4.015 23 O -0.326 6.326 24 C -0.014 4.014 25 C -0.191 4.191 26 C -0.141 4.141 27 C -0.176 4.176 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.251 0.749 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.458 -24.712 2.258 27.766 hybrid contribution -0.061 0.835 -0.180 0.856 sum -12.519 -23.877 2.078 27.039 Atomic orbital electron populations 1.69828 1.08529 1.29831 1.38926 1.26723 0.95826 1.04248 0.91632 0.85058 0.79026 0.76165 0.78777 1.18499 1.18691 1.19452 1.19727 0.94775 0.91349 1.47074 0.91063 1.18043 0.93497 0.92701 0.89628 1.20922 1.01535 0.95472 1.05915 1.20528 0.93852 0.97445 1.00193 1.17101 0.92949 0.86450 1.08688 1.41882 1.51548 1.20779 1.16522 1.16219 0.81203 0.80962 0.82419 1.90883 1.44297 1.73099 1.42429 1.44834 1.47117 1.24379 1.21822 1.21284 1.00370 0.90287 0.86491 1.22828 0.97186 0.89667 0.92126 1.87994 1.54070 1.34847 1.54722 1.22230 0.94727 0.84706 0.95528 1.22721 1.01153 0.96171 1.01510 1.22684 0.99859 0.97131 0.81869 1.87926 1.83671 1.43542 1.17499 1.22707 0.96599 0.86488 0.95611 1.22299 1.02105 0.99008 0.95715 1.20532 0.99388 0.91929 1.02210 1.21158 0.97417 0.96376 1.02698 0.90524 0.88732 0.87661 0.74920 0.75205 0.90177 0.92761 0.90420 0.89550 0.90004 0.92068 0.89391 0.91385 0.87792 0.91299 0.87487 0.89174 0.92052 0.85633 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.18 10.60 21.82 0.23 -44.95 16 2 C 0.03 1.42 5.42 85.24 0.46 1.88 16 3 Si 0.99 39.93 29.56 68.60 2.03 41.96 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.50 -28.05 9.02 23.39 0.21 -27.84 16 8 H 0.07 3.90 7.85 -2.92 -0.02 3.87 16 9 C 0.06 3.61 5.55 -21.28 -0.12 3.49 16 10 C -0.22 -11.80 9.74 22.48 0.22 -11.58 16 11 C -0.10 -5.04 8.61 22.13 0.19 -4.85 16 12 C 0.04 1.91 6.31 38.56 0.24 2.15 16 13 N -0.66 -22.84 5.31 -316.79 -1.68 -24.53 16 14 C 0.69 24.52 8.40 179.05 1.50 26.02 16 15 O -0.63 -28.52 13.76 -3.98 -0.05 -28.58 16 16 N -0.72 -17.36 5.51 -478.55 -2.64 -20.00 16 17 C 0.14 2.89 6.06 86.38 0.52 3.41 16 18 C 0.06 0.73 5.89 71.98 0.42 1.16 16 19 O -0.40 -6.36 9.94 -148.98 -1.48 -7.84 16 20 C 0.09 0.99 2.70 30.71 0.08 1.07 16 21 C -0.18 -1.99 5.76 30.69 0.18 -1.81 16 22 C 0.06 0.60 6.84 72.01 0.49 1.09 16 23 O -0.41 -5.95 10.77 -148.98 -1.60 -7.55 16 24 C 0.06 0.62 6.84 72.01 0.49 1.11 16 25 C -0.15 -1.81 5.79 30.69 0.18 -1.63 16 26 C -0.12 -5.49 9.90 22.13 0.22 -5.27 16 27 C -0.16 -8.32 8.61 22.48 0.19 -8.12 16 28 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 29 H 0.09 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.11 5.36 6.22 -2.91 -0.02 5.34 16 31 H 0.41 10.60 8.83 -92.71 -0.82 9.78 16 32 H 0.41 7.20 8.49 -92.70 -0.79 6.41 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.09 0.76 7.99 -2.39 -0.02 0.74 16 37 H 0.08 0.63 7.79 -2.39 -0.02 0.61 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.74 7.99 -2.38 -0.02 0.73 16 40 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 47 H 0.12 6.59 6.13 -2.91 -0.02 6.58 16 Total: -1.00 -74.06 385.29 -0.32 -74.38 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.61 Total: 36.82 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 5.49 Total: -19.71 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -4.09 Total: -89.48 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -3.14 Total: -43.97 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -74.06 -0.32 -74.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927495549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.443 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.46 seconds