Wall clock time and date at job start Tue Mar 31 2020 22:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48501 * 109.47251 * 270.00180 * 3 2 1 5 5 H 1.48503 * 109.47029 * 30.00392 * 3 2 1 6 6 H 1.48498 * 109.47147 * 149.99942 * 3 2 1 7 7 C 1.37874 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99893 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47125 * 59.99977 * 9 7 2 11 11 N 1.46500 * 109.47068 * 179.97438 * 9 7 2 12 12 C 1.34783 * 120.00052 * 205.27796 * 11 9 7 13 13 O 1.21276 * 119.99711 * 355.21969 * 12 11 9 14 14 C 1.50702 * 119.99734 * 175.22210 * 12 11 9 15 15 H 1.08996 * 109.87562 * 177.13405 * 14 12 11 16 16 C 1.54321 * 109.89049 * 55.93638 * 14 12 11 17 17 C 1.55138 * 103.01850 * 218.30493 * 16 14 12 18 18 C 1.54913 * 101.64981 * 35.65518 * 17 16 14 19 19 N 1.47438 * 109.89175 * 298.16579 * 14 12 11 20 20 C 1.46902 * 110.99937 * 356.14750 * 19 14 12 21 21 C 1.54264 * 110.03709 * 293.02611 * 20 19 14 22 22 C 1.54964 * 104.16002 * 217.13359 * 21 20 19 23 23 C 1.54888 * 102.77548 * 37.88664 * 22 21 20 24 24 C 1.53877 * 110.03469 * 175.80253 * 20 19 14 25 25 C 1.52996 * 109.47479 * 299.99728 * 9 7 2 26 26 F 1.39894 * 109.47173 * 300.00456 * 25 9 7 27 27 F 1.39905 * 109.46766 * 60.00150 * 25 9 7 28 28 F 1.39898 * 109.47162 * 179.97438 * 25 9 7 29 29 H 0.97005 * 119.99650 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00079 * 25.00196 * 11 9 7 31 31 H 1.09002 * 110.70283 * 336.69423 * 16 14 12 32 32 H 1.09000 * 110.70246 * 99.92469 * 16 14 12 33 33 H 1.08997 * 110.99372 * 277.55987 * 17 16 14 34 34 H 1.08999 * 111.02056 * 153.75733 * 17 16 14 35 35 H 1.09001 * 110.37019 * 204.09507 * 18 17 16 36 36 H 1.09001 * 110.46386 * 81.80857 * 18 17 16 37 37 H 1.09002 * 110.01494 * 54.41665 * 20 19 14 38 38 H 1.09008 * 110.48210 * 335.77868 * 21 20 19 39 39 H 1.08995 * 110.49063 * 98.42182 * 21 20 19 40 40 H 1.08997 * 110.72205 * 279.56855 * 22 21 20 41 41 H 1.09008 * 110.92262 * 156.29028 * 22 21 20 42 42 H 1.09001 * 110.48714 * 203.40127 * 23 22 21 43 43 H 1.09005 * 110.60226 * 80.82126 * 23 22 21 44 44 H 1.08997 * 110.03241 * 238.57286 * 24 20 19 45 45 H 1.09003 * 110.02880 * 359.95646 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5566 -0.8903 11 7 2.2029 -3.6126 -0.0018 12 6 1.8382 -4.8105 -0.5005 13 8 0.6969 -4.9922 -0.8682 14 6 2.8486 -5.9241 -0.6010 15 1 2.3683 -6.8275 -0.9765 16 6 3.4720 -6.1941 0.7847 17 6 4.9582 -6.4855 0.4485 18 6 5.2073 -5.5162 -0.7340 19 7 3.9449 -5.5268 -1.5032 20 6 3.6828 -4.2116 -2.1028 21 6 2.4725 -4.2968 -3.0556 22 6 2.8460 -3.3549 -4.2281 23 6 4.3648 -3.6061 -4.3989 24 6 4.8854 -3.7722 -2.9563 25 6 0.3718 -2.5805 1.2490 26 9 1.1766 -2.5066 2.3909 27 9 -0.5373 -1.5171 1.2496 28 9 -0.3281 -3.7918 1.2486 29 1 -0.4850 0.8401 0.0004 30 1 3.0971 -3.4867 0.3526 31 1 3.3865 -5.3151 1.4236 32 1 3.0062 -7.0602 1.2546 33 1 5.0925 -7.5219 0.1388 34 1 5.6044 -6.2456 1.2928 35 1 6.0310 -5.8747 -1.3514 36 1 5.4191 -4.5124 -0.3657 37 1 3.4914 -3.4766 -1.3210 38 1 2.3404 -5.3178 -3.4140 39 1 1.5689 -3.9466 -2.5569 40 1 2.6537 -2.3151 -3.9636 41 1 2.3050 -3.6278 -5.1342 42 1 4.8410 -2.7520 -4.8804 43 1 4.5408 -4.5146 -4.9750 44 1 5.2770 -2.8235 -2.5892 45 1 5.6639 -4.5345 -2.9249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928814033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:20 Heat of formation + Delta-G solvation = -158.698621 kcal Electronic energy + Delta-G solvation = -32732.593981 eV Core-core repulsion = 28142.827729 eV Total energy + Delta-G solvation = -4589.766252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 12.40 seconds Orbital eigenvalues (eV) -48.38713 -46.04230 -45.64938 -40.82062 -37.78306 -36.59936 -34.78328 -32.64660 -31.31206 -30.04479 -28.34091 -27.76293 -26.44804 -24.63666 -22.78561 -21.57491 -21.46012 -19.99417 -19.77630 -19.36631 -17.33729 -17.04809 -16.78920 -16.64947 -16.34722 -15.84016 -15.21925 -15.10973 -14.84379 -14.43063 -14.18440 -13.74663 -13.17734 -13.02327 -12.97772 -12.91219 -12.68998 -12.52915 -12.44088 -12.40330 -12.30946 -12.03034 -11.85873 -11.75001 -11.33347 -11.23643 -11.01671 -10.91858 -10.85582 -10.79731 -10.71504 -10.59668 -10.49895 -10.45463 -10.42554 -10.23564 -9.71550 -9.33969 -8.77105 -8.41219 -7.91634 -6.29138 -4.53498 3.00298 3.13898 3.20845 3.22965 3.70004 4.11627 4.15824 4.52149 4.56628 4.67765 4.85952 4.88401 4.92396 4.99440 5.16440 5.24305 5.43123 5.51014 5.72289 5.74610 5.76596 5.79893 5.81781 5.83419 5.87663 5.90703 5.92186 5.98985 6.09528 6.12573 6.15302 6.20119 6.23454 6.33670 6.45700 6.59922 6.69835 6.88148 7.05232 7.06888 7.25636 7.39446 7.57110 8.19710 8.42904 8.76555 9.14632 10.62344 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.006143 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.705616 B = 4556.850459 C = 5673.934991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.246 3.754 10 H 0.084 0.916 11 N -0.711 5.711 12 C 0.504 3.496 13 O -0.529 6.529 14 C 0.055 3.945 15 H 0.112 0.888 16 C -0.139 4.139 17 C -0.126 4.126 18 C 0.037 3.963 19 N -0.506 5.506 20 C 0.038 3.962 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.137 7.137 28 F -0.216 7.216 29 H 0.268 0.732 30 H 0.396 0.604 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -8.141 -2.241 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.093 0.907 9 C 0.141 3.859 10 H 0.102 0.898 11 N -0.363 5.363 12 C 0.289 3.711 13 O -0.404 6.404 14 C -0.056 4.056 15 H 0.130 0.870 16 C -0.177 4.177 17 C -0.164 4.164 18 C -0.091 4.091 19 N -0.233 5.233 20 C -0.070 4.070 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.153 4.153 25 C 0.360 3.640 26 F -0.192 7.192 27 F -0.118 7.118 28 F -0.198 7.198 29 H 0.079 0.921 30 H 0.232 0.768 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.166 -8.478 -2.899 12.818 hybrid contribution 0.545 1.484 1.148 1.954 sum 9.710 -6.994 -1.752 12.094 Atomic orbital electron populations 1.70396 1.05836 1.27390 1.43428 1.25052 0.95108 1.00035 0.94009 0.86257 0.79634 0.81830 0.78416 1.20136 1.20783 1.19553 1.20809 0.93564 0.88053 1.56346 0.90673 1.19731 0.88661 0.85873 0.91662 0.89818 1.46506 1.16770 1.10996 1.62021 1.20816 0.89189 0.83842 0.77258 1.90719 1.20157 1.81617 1.47925 1.22925 0.91789 0.97688 0.93190 0.86980 1.22886 0.95923 1.02990 0.95950 1.22707 0.95638 1.00216 0.97884 1.23120 0.93231 0.98694 0.94050 1.64080 1.00782 1.28840 1.29573 1.23323 0.95788 0.89790 0.98127 1.22602 0.97601 0.99862 0.95785 1.22446 0.95249 1.00274 0.97971 1.22274 0.96221 1.00704 0.96354 1.22201 0.97277 1.00664 0.95192 1.23151 0.80904 0.72856 0.87131 1.92984 1.74421 1.96197 1.55619 1.93406 1.68410 1.53815 1.96201 1.93078 1.81434 1.48356 1.96962 0.92082 0.76795 0.90649 0.90037 0.90521 0.90574 0.90021 0.93163 0.89258 0.91320 0.90165 0.91085 0.92059 0.92275 0.92032 0.91903 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.44 9.50 55.43 0.53 -21.91 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.91 19.67 29.54 -169.99 -5.02 14.64 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.55 -13.44 8.46 -34.44 -0.29 -13.73 16 8 H 0.08 1.74 7.74 -52.48 -0.41 1.33 16 9 C 0.25 5.85 2.20 -69.09 -0.15 5.70 16 10 H 0.08 2.24 7.52 -51.93 -0.39 1.85 16 11 N -0.71 -13.84 2.65 -54.93 -0.15 -13.99 16 12 C 0.50 9.56 3.20 -10.98 -0.04 9.53 16 13 O -0.53 -12.09 14.19 5.56 0.08 -12.01 16 14 C 0.06 0.82 3.58 -67.88 -0.24 0.58 16 15 H 0.11 1.68 8.13 -51.93 -0.42 1.26 16 16 C -0.14 -1.70 6.35 -24.91 -0.16 -1.86 16 17 C -0.13 -1.24 7.08 -24.59 -0.17 -1.41 16 18 C 0.04 0.40 5.46 -2.30 -0.01 0.39 16 19 N -0.51 -6.89 4.95 -215.48 -1.07 -7.95 16 20 C 0.04 0.57 1.92 -66.59 -0.13 0.44 16 21 C -0.12 -2.02 5.12 -25.03 -0.13 -2.15 16 22 C -0.12 -1.80 6.91 -24.70 -0.17 -1.97 16 23 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 24 C -0.12 -1.50 5.97 -25.61 -0.15 -1.66 16 25 C 0.42 10.47 2.81 37.16 0.10 10.58 16 26 F -0.21 -5.10 16.94 2.25 0.04 -5.07 16 27 F -0.14 -3.75 12.91 2.25 0.03 -3.72 16 28 F -0.22 -5.46 15.52 2.25 0.03 -5.42 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.40 6.97 6.78 -40.82 -0.28 6.70 16 31 H 0.07 1.00 6.95 -51.93 -0.36 0.64 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.81 7.61 -51.93 -0.39 0.41 16 36 H 0.05 0.56 7.73 -51.93 -0.40 0.16 16 37 H 0.09 1.52 4.38 -51.93 -0.23 1.30 16 38 H 0.07 1.15 8.05 -51.92 -0.42 0.73 16 39 H 0.08 1.62 5.54 -51.93 -0.29 1.33 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -28.04 349.08 -8.52 -36.56 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.45 Total: 9.24 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.80 Total: 4.38 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.69 Total: -43.85 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 0.10 Total: -14.22 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.04 -8.52 -36.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.143 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.40 seconds