Wall clock time and date at job start Tue Mar 31 2020 22:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48501 * 109.47251 * 270.00180 * 3 2 1 5 5 H 1.48503 * 109.47029 * 30.00392 * 3 2 1 6 6 H 1.48498 * 109.47147 * 149.99942 * 3 2 1 7 7 C 1.37874 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99893 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47125 * 59.99977 * 9 7 2 11 11 N 1.46500 * 109.47068 * 179.97438 * 9 7 2 12 12 C 1.34783 * 120.00052 * 205.27796 * 11 9 7 13 13 O 1.21276 * 119.99711 * 355.21969 * 12 11 9 14 14 C 1.50702 * 119.99734 * 175.22210 * 12 11 9 15 15 H 1.08996 * 109.87562 * 177.13405 * 14 12 11 16 16 C 1.54321 * 109.89049 * 55.93638 * 14 12 11 17 17 C 1.55138 * 103.01850 * 218.30493 * 16 14 12 18 18 C 1.54913 * 101.64981 * 35.65518 * 17 16 14 19 19 N 1.47438 * 109.89175 * 298.16579 * 14 12 11 20 20 C 1.46902 * 110.99937 * 356.14750 * 19 14 12 21 21 C 1.54264 * 110.03709 * 293.02611 * 20 19 14 22 22 C 1.54964 * 104.16002 * 217.13359 * 21 20 19 23 23 C 1.54888 * 102.77548 * 37.88664 * 22 21 20 24 24 C 1.53877 * 110.03469 * 175.80253 * 20 19 14 25 25 C 1.52996 * 109.47479 * 299.99728 * 9 7 2 26 26 F 1.39894 * 109.47173 * 300.00456 * 25 9 7 27 27 F 1.39905 * 109.46766 * 60.00150 * 25 9 7 28 28 F 1.39898 * 109.47162 * 179.97438 * 25 9 7 29 29 H 0.97005 * 119.99650 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00079 * 25.00196 * 11 9 7 31 31 H 1.09002 * 110.70283 * 336.69423 * 16 14 12 32 32 H 1.09000 * 110.70246 * 99.92469 * 16 14 12 33 33 H 1.08997 * 110.99372 * 277.55987 * 17 16 14 34 34 H 1.08999 * 111.02056 * 153.75733 * 17 16 14 35 35 H 1.09001 * 110.37019 * 204.09507 * 18 17 16 36 36 H 1.09001 * 110.46386 * 81.80857 * 18 17 16 37 37 H 1.09002 * 110.01494 * 54.41665 * 20 19 14 38 38 H 1.09008 * 110.48210 * 335.77868 * 21 20 19 39 39 H 1.08995 * 110.49063 * 98.42182 * 21 20 19 40 40 H 1.08997 * 110.72205 * 279.56855 * 22 21 20 41 41 H 1.09008 * 110.92262 * 156.29028 * 22 21 20 42 42 H 1.09001 * 110.48714 * 203.40127 * 23 22 21 43 43 H 1.09005 * 110.60226 * 80.82126 * 23 22 21 44 44 H 1.08997 * 110.03241 * 238.57286 * 24 20 19 45 45 H 1.09003 * 110.02880 * 359.95646 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5566 -0.8903 11 7 2.2029 -3.6126 -0.0018 12 6 1.8382 -4.8105 -0.5005 13 8 0.6969 -4.9922 -0.8682 14 6 2.8486 -5.9241 -0.6010 15 1 2.3683 -6.8275 -0.9765 16 6 3.4720 -6.1941 0.7847 17 6 4.9582 -6.4855 0.4485 18 6 5.2073 -5.5162 -0.7340 19 7 3.9449 -5.5268 -1.5032 20 6 3.6828 -4.2116 -2.1028 21 6 2.4725 -4.2968 -3.0556 22 6 2.8460 -3.3549 -4.2281 23 6 4.3648 -3.6061 -4.3989 24 6 4.8854 -3.7722 -2.9563 25 6 0.3718 -2.5805 1.2490 26 9 1.1766 -2.5066 2.3909 27 9 -0.5373 -1.5171 1.2496 28 9 -0.3281 -3.7918 1.2486 29 1 -0.4850 0.8401 0.0004 30 1 3.0971 -3.4867 0.3526 31 1 3.3865 -5.3151 1.4236 32 1 3.0062 -7.0602 1.2546 33 1 5.0925 -7.5219 0.1388 34 1 5.6044 -6.2456 1.2928 35 1 6.0310 -5.8747 -1.3514 36 1 5.4191 -4.5124 -0.3657 37 1 3.4914 -3.4766 -1.3210 38 1 2.3404 -5.3178 -3.4140 39 1 1.5689 -3.9466 -2.5569 40 1 2.6537 -2.3151 -3.9636 41 1 2.3050 -3.6278 -5.1342 42 1 4.8410 -2.7520 -4.8804 43 1 4.5408 -4.5146 -4.9750 44 1 5.2770 -2.8235 -2.5892 45 1 5.6639 -4.5345 -2.9249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928814033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:54 Heat of formation + Delta-G solvation = -175.405970 kcal Electronic energy + Delta-G solvation = -32733.318466 eV Core-core repulsion = 28142.827729 eV Total energy + Delta-G solvation = -4590.490737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 38.02 seconds Orbital eigenvalues (eV) -50.45401 -48.09110 -47.76143 -42.14697 -39.19131 -37.69969 -36.58565 -34.49187 -32.35018 -31.38971 -29.84126 -29.05707 -27.55865 -26.62528 -24.25830 -23.10504 -22.50916 -21.38116 -21.13014 -20.60968 -19.14028 -18.92373 -18.68106 -18.28242 -17.91952 -17.32275 -16.80730 -16.53439 -16.28964 -15.69310 -15.49279 -15.14779 -15.01342 -14.87029 -14.51255 -14.42033 -14.32651 -14.14102 -14.08626 -14.02259 -13.91723 -13.73342 -13.49028 -13.07752 -12.98534 -12.75363 -12.64788 -12.25931 -12.23124 -11.92920 -11.90116 -11.81738 -11.76023 -11.72217 -11.60595 -11.53577 -11.35698 -10.85945 -10.69976 -10.00951 -9.20266 -8.23620 -6.54212 1.43172 1.43944 1.52316 1.55412 2.11300 2.35791 2.50012 2.91383 2.99376 3.51739 3.55143 3.68631 3.75321 3.82657 3.84899 3.86699 4.12131 4.14048 4.22553 4.42128 4.57941 4.59915 4.61756 4.64669 4.75397 4.85517 4.86444 4.91016 4.92305 5.05331 5.07821 5.09652 5.14792 5.20970 5.26590 5.29815 5.35793 5.36791 5.49972 5.50878 5.62165 5.95277 6.12244 6.48741 6.60991 7.13334 7.25998 8.68997 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.006143 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.705616 B = 4556.850459 C = 5673.934991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.018 3.982 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.554 4.554 8 H 0.089 0.911 9 C 0.258 3.742 10 H 0.044 0.956 11 N -0.700 5.700 12 C 0.504 3.496 13 O -0.575 6.575 14 C 0.061 3.939 15 H 0.110 0.890 16 C -0.138 4.138 17 C -0.112 4.112 18 C 0.031 3.969 19 N -0.502 5.502 20 C 0.041 3.959 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.110 4.110 25 C 0.411 3.589 26 F -0.204 7.204 27 F -0.151 7.151 28 F -0.219 7.219 29 H 0.268 0.732 30 H 0.407 0.593 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.824 -8.713 -2.249 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.181 1.181 7 C -0.591 4.591 8 H 0.107 0.893 9 C 0.151 3.849 10 H 0.062 0.938 11 N -0.353 5.353 12 C 0.291 3.709 13 O -0.453 6.453 14 C -0.050 4.050 15 H 0.128 0.872 16 C -0.177 4.177 17 C -0.150 4.150 18 C -0.095 4.095 19 N -0.229 5.229 20 C -0.068 4.068 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.147 4.147 25 C 0.355 3.645 26 F -0.185 7.185 27 F -0.133 7.133 28 F -0.201 7.201 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.849 -9.074 -2.898 15.994 hybrid contribution -0.657 1.606 1.139 2.075 sum 12.192 -7.468 -1.759 14.405 Atomic orbital electron populations 1.70531 1.07476 1.28062 1.44684 1.25937 0.95791 1.03511 0.93503 0.85249 0.78651 0.77420 0.78616 1.19495 1.21174 1.18147 1.21107 0.94194 0.88158 1.55602 0.89290 1.19268 0.88725 0.87518 0.89396 0.93846 1.46328 1.16420 1.10312 1.62198 1.21643 0.89394 0.84220 0.75612 1.90691 1.22581 1.82347 1.49659 1.22910 0.91216 0.95399 0.95462 0.87223 1.22920 0.97918 1.03020 0.93847 1.22702 0.93585 1.00718 0.98004 1.23308 0.92159 0.99359 0.94717 1.64152 1.01368 1.27691 1.29647 1.23189 0.96054 0.89979 0.97585 1.22500 0.96802 0.99740 0.96782 1.22434 0.97622 0.98543 0.97457 1.22252 0.93900 1.02002 0.96574 1.22182 0.96542 1.01351 0.94667 1.23396 0.80899 0.72355 0.87859 1.92980 1.74110 1.96156 1.55300 1.93377 1.69027 1.54549 1.96322 1.93066 1.81603 1.48460 1.97016 0.92236 0.75468 0.91781 0.88877 0.89027 0.88409 0.87813 0.93111 0.91485 0.91701 0.94584 0.93064 0.91284 0.90747 0.90689 0.91649 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.20 9.50 21.45 0.20 -47.99 16 2 C 0.02 0.92 5.20 84.65 0.44 1.36 16 3 Si 0.98 40.04 29.54 68.60 2.03 42.07 16 4 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.55 -27.33 8.46 25.60 0.22 -27.11 16 8 H 0.09 4.05 7.74 -2.91 -0.02 4.03 16 9 C 0.26 12.76 2.20 44.24 0.10 12.85 16 10 H 0.04 2.52 7.52 -2.39 -0.02 2.50 16 11 N -0.70 -27.91 2.65 -446.10 -1.18 -29.09 16 12 C 0.50 19.71 3.20 87.66 0.28 19.99 16 13 O -0.57 -27.79 14.19 -3.02 -0.04 -27.84 16 14 C 0.06 1.77 3.58 44.51 0.16 1.93 16 15 H 0.11 3.25 8.13 -2.39 -0.02 3.23 16 16 C -0.14 -3.09 6.35 31.78 0.20 -2.89 16 17 C -0.11 -1.75 7.08 31.98 0.23 -1.52 16 18 C 0.03 0.57 5.46 86.78 0.47 1.05 16 19 N -0.50 -12.70 4.95 -835.66 -4.14 -16.84 16 20 C 0.04 1.19 1.92 45.64 0.09 1.28 16 21 C -0.12 -4.14 5.12 31.69 0.16 -3.97 16 22 C -0.12 -3.64 6.91 31.91 0.22 -3.42 16 23 C -0.11 -2.53 6.83 31.67 0.22 -2.31 16 24 C -0.11 -2.56 5.97 31.32 0.19 -2.38 16 25 C 0.41 21.38 2.81 71.98 0.20 21.58 16 26 F -0.20 -9.95 16.94 44.97 0.76 -9.19 16 27 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 28 F -0.22 -11.50 15.52 44.97 0.70 -10.80 16 29 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 30 H 0.41 14.26 6.78 -92.71 -0.63 13.64 16 31 H 0.06 1.59 6.95 -2.39 -0.02 1.57 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.53 7.61 -2.39 -0.02 1.51 16 36 H 0.05 0.96 7.73 -2.39 -0.02 0.94 16 37 H 0.07 2.28 4.38 -2.39 -0.01 2.27 16 38 H 0.06 2.22 8.05 -2.38 -0.02 2.21 16 39 H 0.04 1.55 5.54 -2.39 -0.01 1.54 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.09 1.72 6.62 -2.39 -0.02 1.70 16 Total: -1.00 -63.39 349.08 2.47 -60.92 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.39 Total: 30.36 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 3.17 Total: 16.43 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -5.12 Total: -93.92 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.04 Total: -27.84 kcal Atomic # 9 Polarization: -30.06 SS G_CDS: 2.04 Total: -28.02 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -63.39 2.47 -60.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.490 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.02 seconds