Wall clock time and date at job start Tue Mar 31 2020 22:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47003 * 239.99929 * 3 2 1 5 5 H 1.48502 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47219 * 119.99877 * 3 2 1 7 7 C 1.37878 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00121 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99833 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47627 * 300.00060 * 9 7 2 11 11 N 1.46506 * 109.47008 * 180.02562 * 9 7 2 12 12 C 1.34772 * 119.99819 * 155.00274 * 11 9 7 13 13 O 1.21274 * 120.00389 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99640 * 179.97438 * 12 11 9 15 15 H 1.09004 * 110.36683 * 57.65001 * 14 12 11 16 16 C 1.54381 * 110.41352 * 295.17067 * 14 12 11 17 17 C 1.54258 * 105.06134 * 217.36634 * 16 14 12 18 18 C 1.54381 * 105.06240 * 0.02562 * 17 16 14 19 19 N 1.48565 * 104.59320 * 23.85132 * 18 17 16 20 20 C 1.46900 * 110.99656 * 200.96164 * 19 18 17 21 21 C 1.54264 * 110.03193 * 58.33685 * 20 19 18 22 22 C 1.54972 * 104.15926 * 217.13266 * 21 20 19 23 23 C 1.54884 * 102.77290 * 37.89023 * 22 21 20 24 24 C 1.53869 * 110.03391 * 301.11606 * 20 19 18 25 25 C 1.52994 * 109.47218 * 60.00604 * 9 7 2 26 26 F 1.39902 * 109.47556 * 179.97438 * 25 9 7 27 27 F 1.39904 * 109.47061 * 299.99551 * 25 9 7 28 28 F 1.39899 * 109.47219 * 59.99424 * 25 9 7 29 29 H 0.96998 * 120.00756 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99537 * 335.00003 * 11 9 7 31 31 H 1.09000 * 110.32455 * 336.26627 * 16 14 12 32 32 H 1.09002 * 110.32071 * 98.36845 * 16 14 12 33 33 H 1.09000 * 110.31811 * 118.89780 * 17 16 14 34 34 H 1.08994 * 110.32552 * 241.00366 * 17 16 14 35 35 H 1.08991 * 110.41232 * 265.07144 * 18 17 16 36 36 H 1.08995 * 110.41115 * 142.62733 * 18 17 16 37 37 H 1.09003 * 110.01358 * 179.72756 * 20 19 18 38 38 H 1.08995 * 110.48955 * 335.78428 * 21 20 19 39 39 H 1.09008 * 110.48428 * 98.42736 * 21 20 19 40 40 H 1.09000 * 110.71962 * 279.57453 * 22 21 20 41 41 H 1.08995 * 110.92195 * 156.29836 * 22 21 20 42 42 H 1.09005 * 110.48939 * 203.40498 * 23 22 21 43 43 H 1.08996 * 110.60229 * 80.81625 * 23 22 21 44 44 H 1.09002 * 110.03427 * 238.57363 * 24 20 19 45 45 H 1.09002 * 110.02977 * 359.95247 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.7195 -4.9699 0.9369 14 6 2.8160 -5.9579 0.4921 15 1 3.7168 -5.6873 1.0432 16 6 3.1686 -6.3641 -0.9549 17 6 3.2931 -7.9013 -0.9206 18 6 3.0046 -8.2946 0.5441 19 7 2.1928 -7.1718 1.0802 20 6 2.2502 -7.1345 2.5476 21 6 3.7130 -6.9897 3.0157 22 6 3.7912 -7.8658 4.2916 23 6 2.8959 -9.0771 3.9307 24 6 1.7306 -8.4608 3.1294 25 6 0.3710 -2.5800 -1.2495 26 9 -0.3281 -3.7918 -1.2498 27 9 -0.5382 -1.5166 -1.2490 28 9 1.1749 -2.5056 -2.3920 29 1 -0.4851 0.8400 -0.0004 30 1 3.0969 -3.4865 -0.3556 31 1 2.3732 -6.0638 -1.6370 32 1 4.1143 -5.9128 -1.2551 33 1 2.5587 -8.3554 -1.5859 34 1 4.3002 -8.2061 -1.2051 35 1 3.9357 -8.3910 1.1023 36 1 2.4387 -9.2254 0.5834 37 1 1.6539 -6.3029 2.9233 38 1 4.3963 -7.3642 2.2535 39 1 3.9367 -5.9494 3.2521 40 1 3.3891 -7.3309 5.1520 41 1 4.8156 -8.1858 4.4819 42 1 2.5241 -9.5595 4.8347 43 1 3.4454 -9.7908 3.3170 44 1 0.8827 -8.2729 3.7880 45 1 1.4350 -9.1319 2.3228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928814036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:36 Heat of formation + Delta-G solvation = -170.516899 kcal Electronic energy + Delta-G solvation = -31376.463390 eV Core-core repulsion = 26786.184659 eV Total energy + Delta-G solvation = -4590.278731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 7.65 seconds Orbital eigenvalues (eV) -48.30839 -45.96013 -45.57751 -40.37650 -38.35057 -36.36399 -34.56325 -32.57232 -31.39609 -29.92089 -28.77982 -27.73178 -26.67524 -24.55774 -23.04922 -21.68026 -21.12952 -20.70622 -19.60929 -19.01030 -17.47161 -16.85553 -16.64143 -16.59122 -16.52172 -15.71601 -15.58856 -15.10602 -14.79465 -14.50515 -13.93297 -13.76827 -13.58405 -13.42331 -13.11984 -12.88647 -12.78440 -12.39783 -12.34849 -12.23433 -12.06204 -11.95019 -11.78766 -11.66327 -11.59189 -11.40221 -11.22613 -11.16379 -11.08184 -10.94640 -10.86487 -10.77103 -10.70680 -10.45370 -10.42757 -10.37755 -9.65786 -9.07482 -8.70876 -8.26704 -8.16265 -6.22446 -4.46632 3.19338 3.24360 3.26002 3.29776 3.59421 4.15391 4.25558 4.48529 4.56800 4.61253 4.64619 4.80727 4.82981 4.94456 4.99455 5.18002 5.33966 5.35892 5.40695 5.43707 5.50850 5.54739 5.59866 5.67880 5.76103 5.79714 5.81468 5.86061 5.89288 5.91195 5.96990 6.03977 6.11852 6.18462 6.25163 6.26352 6.34687 6.87082 7.00450 7.13980 7.24258 7.49507 7.64262 8.39148 8.51666 8.98971 9.21548 10.69026 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003723 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.884840 B = 7519.321414 C = 8108.504462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.247 3.753 10 H 0.083 0.917 11 N -0.714 5.714 12 C 0.514 3.486 13 O -0.516 6.516 14 C 0.042 3.958 15 H 0.077 0.923 16 C -0.116 4.116 17 C -0.122 4.122 18 C 0.026 3.974 19 N -0.475 5.475 20 C 0.072 3.928 21 C -0.165 4.165 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.116 4.116 25 C 0.417 3.583 26 F -0.216 7.216 27 F -0.138 7.138 28 F -0.210 7.210 29 H 0.268 0.732 30 H 0.396 0.604 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.224 -14.587 2.988 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.142 3.858 10 H 0.101 0.899 11 N -0.365 5.365 12 C 0.298 3.702 13 O -0.390 6.390 14 C -0.070 4.070 15 H 0.095 0.905 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.102 4.102 19 N -0.198 5.198 20 C -0.037 4.037 21 C -0.204 4.204 22 C -0.158 4.158 23 C -0.163 4.163 24 C -0.154 4.154 25 C 0.360 3.640 26 F -0.198 7.198 27 F -0.119 7.119 28 F -0.192 7.192 29 H 0.079 0.921 30 H 0.229 0.771 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.578 -14.615 3.159 16.764 hybrid contribution 1.503 1.087 -0.245 1.871 sum 9.081 -13.529 2.915 16.553 Atomic orbital electron populations 1.70390 1.05848 1.27437 1.43571 1.25078 0.95133 1.00073 0.94085 0.86291 0.79352 0.81430 0.78873 1.19836 1.20877 1.19829 1.20831 0.93684 0.88177 1.56231 0.90596 1.19663 0.88728 0.85830 0.91609 0.89911 1.46058 1.17063 1.10563 1.62815 1.20185 0.88447 0.83134 0.78392 1.90689 1.20790 1.82465 1.45042 1.22643 0.95726 0.91634 0.96973 0.90547 1.22268 1.02336 0.95994 0.94827 1.22271 1.01579 0.95486 0.96647 1.23212 0.96532 0.95730 0.94720 1.65348 1.47862 1.00524 1.06050 1.22563 0.94663 0.99257 0.87256 1.23155 0.98619 1.00435 0.98151 1.22417 0.99450 0.96316 0.97601 1.22387 0.96774 0.97424 0.99677 1.22177 0.97821 0.95981 0.99448 1.23133 0.80890 0.72812 0.87121 1.93080 1.81479 1.48302 1.96967 1.93401 1.68438 1.53854 1.96206 1.92982 1.74465 1.96194 1.55555 0.92083 0.77060 0.90274 0.90570 0.90870 0.91300 0.93065 0.90027 0.88763 0.90975 0.91450 0.91392 0.91892 0.91796 0.91937 0.91366 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.08 9.50 55.43 0.53 -22.55 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -14.02 8.46 -34.44 -0.29 -14.31 16 8 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 9 C 0.25 6.15 2.21 -69.08 -0.15 6.00 16 10 H 0.08 2.32 7.58 -51.93 -0.39 1.92 16 11 N -0.71 -14.51 4.97 -54.93 -0.27 -14.78 16 12 C 0.51 10.16 6.45 -10.99 -0.07 10.09 16 13 O -0.52 -12.29 14.40 5.56 0.08 -12.21 16 14 C 0.04 0.62 2.49 -67.20 -0.17 0.46 16 15 H 0.08 1.01 6.39 -51.93 -0.33 0.68 16 16 C -0.12 -1.47 6.53 -25.35 -0.17 -1.63 16 17 C -0.12 -1.27 7.00 -25.35 -0.18 -1.45 16 18 C 0.03 0.28 5.41 -2.18 -0.01 0.27 16 19 N -0.47 -6.80 4.67 -214.24 -1.00 -7.80 16 20 C 0.07 0.95 2.94 -66.60 -0.20 0.76 16 21 C -0.16 -1.81 4.63 -25.03 -0.12 -1.92 16 22 C -0.12 -1.11 6.91 -24.70 -0.17 -1.29 16 23 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 24 C -0.12 -1.31 6.06 -25.61 -0.16 -1.46 16 25 C 0.42 10.78 2.81 37.15 0.10 10.88 16 26 F -0.22 -5.61 15.68 2.25 0.04 -5.57 16 27 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 28 F -0.21 -5.20 16.94 2.25 0.04 -5.16 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.40 6.93 8.54 -40.82 -0.35 6.58 16 31 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.50 5.57 -51.93 -0.29 0.21 16 36 H 0.08 0.84 7.18 -51.93 -0.37 0.47 16 37 H 0.09 1.54 7.55 -51.93 -0.39 1.15 16 38 H 0.07 0.74 5.35 -51.93 -0.28 0.46 16 39 H 0.07 0.78 8.05 -51.92 -0.42 0.37 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.84 6.57 -51.93 -0.34 0.49 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -30.13 355.67 -8.56 -38.68 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.50 Total: 6.15 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.83 Total: 6.70 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.75 Total: -45.13 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 0.10 Total: -14.56 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.13 -8.56 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.832 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.66 seconds