Wall clock time and date at job start Tue Mar 31 2020 22:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47003 * 239.99929 * 3 2 1 5 5 H 1.48502 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47219 * 119.99877 * 3 2 1 7 7 C 1.37878 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00121 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99833 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47627 * 300.00060 * 9 7 2 11 11 N 1.46506 * 109.47008 * 180.02562 * 9 7 2 12 12 C 1.34772 * 119.99819 * 155.00274 * 11 9 7 13 13 O 1.21274 * 120.00389 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99640 * 179.97438 * 12 11 9 15 15 H 1.09004 * 110.36683 * 57.65001 * 14 12 11 16 16 C 1.54381 * 110.41352 * 295.17067 * 14 12 11 17 17 C 1.54258 * 105.06134 * 217.36634 * 16 14 12 18 18 C 1.54381 * 105.06240 * 0.02562 * 17 16 14 19 19 N 1.48565 * 104.59320 * 23.85132 * 18 17 16 20 20 C 1.46900 * 110.99656 * 200.96164 * 19 18 17 21 21 C 1.54264 * 110.03193 * 58.33685 * 20 19 18 22 22 C 1.54972 * 104.15926 * 217.13266 * 21 20 19 23 23 C 1.54884 * 102.77290 * 37.89023 * 22 21 20 24 24 C 1.53869 * 110.03391 * 301.11606 * 20 19 18 25 25 C 1.52994 * 109.47218 * 60.00604 * 9 7 2 26 26 F 1.39902 * 109.47556 * 179.97438 * 25 9 7 27 27 F 1.39904 * 109.47061 * 299.99551 * 25 9 7 28 28 F 1.39899 * 109.47219 * 59.99424 * 25 9 7 29 29 H 0.96998 * 120.00756 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99537 * 335.00003 * 11 9 7 31 31 H 1.09000 * 110.32455 * 336.26627 * 16 14 12 32 32 H 1.09002 * 110.32071 * 98.36845 * 16 14 12 33 33 H 1.09000 * 110.31811 * 118.89780 * 17 16 14 34 34 H 1.08994 * 110.32552 * 241.00366 * 17 16 14 35 35 H 1.08991 * 110.41232 * 265.07144 * 18 17 16 36 36 H 1.08995 * 110.41115 * 142.62733 * 18 17 16 37 37 H 1.09003 * 110.01358 * 179.72756 * 20 19 18 38 38 H 1.08995 * 110.48955 * 335.78428 * 21 20 19 39 39 H 1.09008 * 110.48428 * 98.42736 * 21 20 19 40 40 H 1.09000 * 110.71962 * 279.57453 * 22 21 20 41 41 H 1.08995 * 110.92195 * 156.29836 * 22 21 20 42 42 H 1.09005 * 110.48939 * 203.40498 * 23 22 21 43 43 H 1.08996 * 110.60229 * 80.81625 * 23 22 21 44 44 H 1.09002 * 110.03427 * 238.57363 * 24 20 19 45 45 H 1.09002 * 110.02977 * 359.95247 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.7195 -4.9699 0.9369 14 6 2.8160 -5.9579 0.4921 15 1 3.7168 -5.6873 1.0432 16 6 3.1686 -6.3641 -0.9549 17 6 3.2931 -7.9013 -0.9206 18 6 3.0046 -8.2946 0.5441 19 7 2.1928 -7.1718 1.0802 20 6 2.2502 -7.1345 2.5476 21 6 3.7130 -6.9897 3.0157 22 6 3.7912 -7.8658 4.2916 23 6 2.8959 -9.0771 3.9307 24 6 1.7306 -8.4608 3.1294 25 6 0.3710 -2.5800 -1.2495 26 9 -0.3281 -3.7918 -1.2498 27 9 -0.5382 -1.5166 -1.2490 28 9 1.1749 -2.5056 -2.3920 29 1 -0.4851 0.8400 -0.0004 30 1 3.0969 -3.4865 -0.3556 31 1 2.3732 -6.0638 -1.6370 32 1 4.1143 -5.9128 -1.2551 33 1 2.5587 -8.3554 -1.5859 34 1 4.3002 -8.2061 -1.2051 35 1 3.9357 -8.3910 1.1023 36 1 2.4387 -9.2254 0.5834 37 1 1.6539 -6.3029 2.9233 38 1 4.3963 -7.3642 2.2535 39 1 3.9367 -5.9494 3.2521 40 1 3.3891 -7.3309 5.1520 41 1 4.8156 -8.1858 4.4819 42 1 2.5241 -9.5595 4.8347 43 1 3.4454 -9.7908 3.3170 44 1 0.8827 -8.2729 3.7880 45 1 1.4350 -9.1319 2.3228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928814036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:35 Heat of formation + Delta-G solvation = -190.033122 kcal Electronic energy + Delta-G solvation = -31377.309677 eV Core-core repulsion = 26786.184659 eV Total energy + Delta-G solvation = -4591.125018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -50.42580 -48.05904 -47.73881 -41.53886 -39.78273 -37.33981 -36.42568 -34.46158 -32.34014 -31.31439 -29.79604 -29.17941 -27.58234 -26.59829 -24.43811 -23.05603 -22.38730 -21.66477 -21.05491 -20.10800 -19.21628 -18.86132 -18.64061 -18.31722 -17.66889 -17.40288 -16.82587 -16.52408 -16.29867 -15.69571 -15.29626 -15.10470 -14.96875 -14.82737 -14.65438 -14.47711 -14.40704 -14.30468 -14.15415 -14.03522 -13.89617 -13.76776 -13.16498 -12.97546 -12.79183 -12.62809 -12.61298 -12.48123 -12.26055 -12.20194 -12.04559 -11.92252 -11.77143 -11.66803 -11.60383 -11.41096 -11.24956 -10.68442 -10.65783 -10.03447 -9.25628 -8.21439 -6.52962 1.45819 1.48301 1.56913 1.71663 2.12715 2.38293 2.53064 2.93487 3.07667 3.53355 3.60792 3.71040 3.75713 3.80557 3.87674 4.00222 4.03489 4.11820 4.23510 4.30812 4.50852 4.52093 4.54828 4.59066 4.62280 4.72868 4.84719 4.90637 4.92247 4.96500 5.05462 5.08353 5.12178 5.20128 5.23695 5.31171 5.39535 5.43412 5.46800 5.54938 5.64560 5.91987 6.16461 6.51719 6.78485 7.16933 7.43030 8.71104 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003723 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.884840 B = 7519.321414 C = 8108.504462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.255 3.745 10 H 0.041 0.959 11 N -0.707 5.707 12 C 0.508 3.492 13 O -0.564 6.564 14 C 0.051 3.949 15 H 0.099 0.901 16 C -0.115 4.115 17 C -0.115 4.115 18 C 0.029 3.971 19 N -0.504 5.504 20 C 0.069 3.931 21 C -0.159 4.159 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.115 4.115 25 C 0.414 3.586 26 F -0.220 7.220 27 F -0.152 7.152 28 F -0.202 7.202 29 H 0.268 0.732 30 H 0.412 0.588 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.656 -15.861 2.801 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.147 3.853 10 H 0.059 0.941 11 N -0.359 5.359 12 C 0.295 3.705 13 O -0.442 6.442 14 C -0.061 4.061 15 H 0.116 0.884 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.098 4.098 19 N -0.228 5.228 20 C -0.040 4.040 21 C -0.197 4.197 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.153 4.153 25 C 0.357 3.643 26 F -0.202 7.202 27 F -0.133 7.133 28 F -0.184 7.184 29 H 0.078 0.922 30 H 0.248 0.752 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.056 -15.920 2.963 19.608 hybrid contribution 0.341 1.449 -0.187 1.500 sum 11.396 -14.471 2.777 18.628 Atomic orbital electron populations 1.70534 1.07581 1.28196 1.44671 1.26027 0.95874 1.03778 0.93441 0.85209 0.77996 0.76692 0.79427 1.18892 1.21083 1.18642 1.21191 0.94511 0.88276 1.55785 0.88902 1.19240 0.88927 0.87669 0.89435 0.94135 1.45927 1.17001 1.09917 1.63028 1.21226 0.88813 0.83825 0.76615 1.90661 1.23344 1.83227 1.46925 1.22603 0.94444 0.89951 0.99088 0.88396 1.22325 1.02598 0.98099 0.92322 1.22294 1.03441 0.93357 0.96198 1.23292 0.96955 0.94525 0.95026 1.65260 1.49611 1.01296 1.06647 1.22476 0.95811 0.98650 0.87075 1.23090 0.96906 1.00306 0.99425 1.22421 1.00693 0.95951 0.96384 1.22351 0.95609 0.97380 0.99948 1.22157 0.98574 0.95076 0.99471 1.23317 0.80844 0.72286 0.87816 1.93068 1.81662 1.48462 1.97025 1.93372 1.69045 1.54570 1.96327 1.92981 1.74120 1.96145 1.55146 0.92209 0.75208 0.93188 0.87684 0.91312 0.87976 0.91021 0.89358 0.93405 0.89369 0.92662 0.92072 0.89797 0.90704 0.90255 0.92615 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.35 9.50 21.45 0.20 -49.15 16 2 C 0.01 0.73 5.20 84.66 0.44 1.17 16 3 Si 0.98 40.64 29.54 68.60 2.03 42.67 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.56 -28.55 8.46 25.60 0.22 -28.34 16 8 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 9 C 0.25 13.07 2.21 44.24 0.10 13.17 16 10 H 0.04 2.43 7.58 -2.39 -0.02 2.41 16 11 N -0.71 -29.16 4.97 -446.11 -2.22 -31.38 16 12 C 0.51 20.68 6.45 87.66 0.57 21.25 16 13 O -0.56 -28.52 14.40 -3.01 -0.04 -28.56 16 14 C 0.05 1.46 2.49 44.31 0.11 1.57 16 15 H 0.10 2.39 6.39 -2.39 -0.02 2.37 16 16 C -0.12 -2.68 6.53 31.49 0.21 -2.47 16 17 C -0.12 -2.04 7.00 31.49 0.22 -1.81 16 18 C 0.03 0.55 5.41 86.45 0.47 1.01 16 19 N -0.50 -14.17 4.67 -831.74 -3.89 -18.06 16 20 C 0.07 1.84 2.94 45.64 0.13 1.98 16 21 C -0.16 -3.21 4.63 31.70 0.15 -3.06 16 22 C -0.12 -1.89 6.91 31.91 0.22 -1.67 16 23 C -0.12 -1.77 6.83 31.67 0.22 -1.56 16 24 C -0.11 -2.52 6.06 31.32 0.19 -2.33 16 25 C 0.41 22.04 2.81 71.98 0.20 22.24 16 26 F -0.22 -11.87 15.68 44.97 0.71 -11.17 16 27 F -0.15 -8.80 12.91 44.97 0.58 -8.22 16 28 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.41 14.10 8.54 -92.71 -0.79 13.31 16 31 H 0.05 1.46 7.85 -2.39 -0.02 1.44 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.09 5.57 -2.39 -0.01 1.08 16 36 H 0.09 1.58 7.18 -2.39 -0.02 1.57 16 37 H 0.05 1.69 7.55 -2.39 -0.02 1.68 16 38 H 0.09 1.50 5.35 -2.39 -0.01 1.49 16 39 H 0.05 1.24 8.05 -2.38 -0.02 1.22 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.59 6.57 -2.39 -0.02 1.58 16 Total: -1.00 -68.64 355.67 1.80 -66.84 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.23 Total: 25.17 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 3.43 Total: 21.14 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -5.90 Total: -98.58 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.04 Total: -28.56 kcal Atomic # 9 Polarization: -30.73 SS G_CDS: 2.05 Total: -28.69 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -68.64 1.80 -66.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.188 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds