Wall clock time and date at job start Tue Mar 31 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47039 * 269.99915 * 3 2 1 5 5 H 1.48498 * 109.46975 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47221 * 149.99796 * 3 2 1 7 7 C 1.37881 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47165 * 59.99538 * 9 7 2 11 11 N 1.46494 * 109.47065 * 179.97438 * 9 7 2 12 12 C 1.34782 * 120.00260 * 204.99710 * 11 9 7 13 13 O 1.21288 * 119.99316 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00277 * 180.02562 * 12 11 9 15 15 H 1.08994 * 110.00707 * 0.81998 * 14 12 11 16 16 C 1.54316 * 109.89003 * 121.94056 * 14 12 11 17 17 C 1.55134 * 103.02029 * 141.68585 * 16 14 12 18 18 C 1.54902 * 101.65379 * 324.34662 * 17 16 14 19 19 N 1.47445 * 109.88466 * 239.70944 * 14 12 11 20 20 C 1.46899 * 111.00323 * 3.84836 * 19 14 12 21 21 C 1.55236 * 110.46795 * 182.05242 * 20 19 14 22 22 C 1.54887 * 102.58626 * 203.39883 * 21 20 19 23 23 C 1.54267 * 104.31547 * 37.93070 * 22 21 20 24 24 C 1.53875 * 106.59847 * 336.32247 * 23 22 21 25 25 C 1.52998 * 109.46812 * 300.00005 * 9 7 2 26 26 F 1.39904 * 109.47140 * 299.99540 * 25 9 7 27 27 F 1.39897 * 109.47376 * 59.99974 * 25 9 7 28 28 F 1.39903 * 109.46897 * 180.02562 * 25 9 7 29 29 H 0.97002 * 120.00048 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00066 * 25.00122 * 11 9 7 31 31 H 1.09001 * 110.70280 * 260.07144 * 16 14 12 32 32 H 1.09001 * 110.70340 * 23.30204 * 16 14 12 33 33 H 1.09004 * 110.98975 * 82.43770 * 17 16 14 34 34 H 1.08997 * 110.99125 * 206.21375 * 17 16 14 35 35 H 1.08997 * 110.37411 * 278.23491 * 18 17 16 36 36 H 1.09006 * 110.37208 * 155.89938 * 18 17 16 37 37 H 1.08997 * 110.43453 * 304.70590 * 20 19 14 38 38 H 1.08997 * 110.90210 * 85.10918 * 21 20 19 39 39 H 1.09002 * 110.76536 * 321.62141 * 21 20 19 40 40 H 1.08999 * 110.48600 * 279.18463 * 22 21 20 41 41 H 1.08996 * 110.49156 * 156.67464 * 22 21 20 42 42 H 1.09000 * 110.03246 * 95.61081 * 23 22 21 43 43 H 1.09004 * 110.02911 * 216.99042 * 23 22 21 44 44 H 1.09004 * 110.02589 * 119.28450 * 24 23 22 45 45 H 1.08989 * 110.03377 * 240.66601 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2031 -3.6126 0.0005 12 6 1.8370 -4.8123 -0.4927 13 8 0.7195 -4.9698 -0.9370 14 6 2.8161 -5.9579 -0.4922 15 1 3.7591 -5.6423 -0.0458 16 6 2.2325 -7.1470 0.2994 17 6 2.6937 -8.3767 -0.5264 18 6 2.6087 -7.8313 -1.9738 19 7 3.0453 -6.4224 -1.8727 20 6 2.3283 -5.5785 -2.8380 21 6 2.5361 -6.1089 -4.2820 22 6 2.2755 -4.8494 -5.1450 23 6 2.8967 -3.6948 -4.3320 24 6 2.9303 -4.1584 -2.8651 25 6 0.3710 -2.5799 1.2495 26 9 1.1749 -2.5056 2.3920 27 9 -0.5381 -1.5166 1.2489 28 9 -0.3280 -3.7917 1.2498 29 1 -0.4850 0.8401 -0.0004 30 1 3.0969 -3.4865 0.3556 31 1 2.6484 -7.1810 1.3063 32 1 1.1444 -7.0910 0.3324 33 1 3.7167 -8.6553 -0.2736 34 1 2.0157 -9.2184 -0.3852 35 1 1.5835 -7.8856 -2.3401 36 1 3.2769 -8.3895 -2.6295 37 1 1.2669 -5.5383 -2.5935 38 1 1.8159 -6.8930 -4.5157 39 1 3.5566 -6.4667 -4.4192 40 1 1.2050 -4.6912 -5.2755 41 1 2.7673 -4.9418 -6.1133 42 1 3.9087 -3.4932 -4.6832 43 1 2.2833 -2.7988 -4.4273 44 1 3.9586 -4.1817 -2.5045 45 1 2.3335 -3.4872 -2.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928814037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:20 Heat of formation + Delta-G solvation = -167.081845 kcal Electronic energy + Delta-G solvation = -32249.995293 eV Core-core repulsion = 27659.865517 eV Total energy + Delta-G solvation = -4590.129776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.38290 -46.03835 -45.64627 -40.67620 -37.69199 -36.62064 -34.68695 -32.63490 -31.30025 -30.02653 -28.32459 -27.79840 -26.46534 -24.61162 -22.82661 -21.51694 -21.07846 -20.19947 -19.75269 -19.31863 -17.44049 -16.92846 -16.74743 -16.62202 -16.34032 -15.74890 -15.57483 -15.07920 -14.84004 -14.35884 -13.99697 -13.94726 -13.23562 -13.07836 -12.96746 -12.88837 -12.61739 -12.44378 -12.34923 -12.33437 -12.25745 -12.00558 -11.84685 -11.71084 -11.24023 -11.17682 -11.08914 -10.97320 -10.87109 -10.80051 -10.76640 -10.69892 -10.46213 -10.42010 -10.36541 -10.06234 -9.67223 -9.49363 -8.74704 -8.39993 -7.88682 -6.26636 -4.50585 3.00866 3.16693 3.23553 3.26112 3.76195 4.11507 4.18999 4.53408 4.57746 4.71457 4.90310 4.91081 4.93095 5.04526 5.23602 5.27251 5.45587 5.51698 5.70377 5.76307 5.79277 5.80483 5.82489 5.84487 5.86651 5.87197 5.94261 5.96671 6.02938 6.12537 6.17802 6.19220 6.25548 6.39134 6.51194 6.58694 6.68084 6.90083 7.05293 7.13119 7.28269 7.43501 7.60129 8.26935 8.46831 8.81693 9.17596 10.64849 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.005177 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.000995 B = 5407.560489 C = 6723.644613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.066 3.934 3 Si 0.913 3.087 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.246 3.754 10 H 0.084 0.916 11 N -0.708 5.708 12 C 0.502 3.498 13 O -0.535 6.535 14 C 0.053 3.947 15 H 0.097 0.903 16 C -0.129 4.129 17 C -0.126 4.126 18 C 0.042 3.958 19 N -0.498 5.498 20 C 0.041 3.959 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.127 4.127 25 C 0.416 3.584 26 F -0.209 7.209 27 F -0.137 7.137 28 F -0.219 7.219 29 H 0.268 0.732 30 H 0.399 0.601 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -11.483 -3.865 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.101 0.899 11 N -0.357 5.357 12 C 0.288 3.712 13 O -0.412 6.412 14 C -0.058 4.058 15 H 0.115 0.885 16 C -0.168 4.168 17 C -0.164 4.164 18 C -0.086 4.086 19 N -0.223 5.223 20 C -0.067 4.067 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.165 4.165 25 C 0.360 3.640 26 F -0.191 7.191 27 F -0.118 7.118 28 F -0.201 7.201 29 H 0.079 0.921 30 H 0.233 0.767 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.936 -11.397 -4.275 13.543 hybrid contribution -0.172 0.969 0.717 1.217 sum 5.764 -10.428 -3.559 12.435 Atomic orbital electron populations 1.70397 1.05871 1.27366 1.43647 1.25073 0.95117 1.00109 0.94019 0.86235 0.79645 0.81726 0.78396 1.20171 1.20829 1.19486 1.20870 0.93775 0.88051 1.56071 0.90422 1.19688 0.88730 0.85996 0.91557 0.89892 1.46234 1.17153 1.10599 1.61712 1.20794 0.88404 0.84195 0.77812 1.90606 1.21556 1.83257 1.45785 1.22553 0.97864 0.93901 0.91465 0.88502 1.22745 1.02085 0.93010 0.98912 1.22682 1.01729 0.97299 0.94682 1.23038 0.99439 0.89042 0.97064 1.64161 1.54317 1.02116 1.01745 1.23494 0.99282 0.92708 0.91172 1.22560 1.01294 0.97085 0.94120 1.22290 1.00755 0.95029 0.97947 1.22018 1.00416 0.98118 0.94969 1.22401 1.01708 0.95240 0.97168 1.23172 0.80883 0.72759 0.87175 1.92990 1.74435 1.96182 1.55521 1.93406 1.68418 1.53777 1.96201 1.93065 1.81552 1.48473 1.96984 0.92130 0.76665 0.90386 0.90150 0.90667 0.90782 0.93226 0.90226 0.88799 0.92338 0.91149 0.91818 0.92073 0.92265 0.91759 0.91456 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.68 9.50 55.43 0.53 -22.15 16 2 C 0.07 1.68 5.20 -17.82 -0.09 1.58 16 3 Si 0.91 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -13.63 8.46 -34.44 -0.29 -13.92 16 8 H 0.08 1.82 7.74 -52.48 -0.41 1.42 16 9 C 0.25 5.88 1.76 -69.09 -0.12 5.76 16 10 H 0.08 2.24 7.54 -51.93 -0.39 1.85 16 11 N -0.71 -13.85 4.02 -54.94 -0.22 -14.07 16 12 C 0.50 9.39 3.13 -10.98 -0.03 9.35 16 13 O -0.53 -11.77 12.34 5.55 0.07 -11.70 16 14 C 0.05 0.79 3.63 -67.88 -0.25 0.55 16 15 H 0.10 1.29 7.94 -51.93 -0.41 0.87 16 16 C -0.13 -1.69 6.43 -24.91 -0.16 -1.85 16 17 C -0.13 -1.34 7.08 -24.60 -0.17 -1.51 16 18 C 0.04 0.50 5.84 -2.30 -0.01 0.49 16 19 N -0.50 -7.05 4.99 -214.62 -1.07 -8.12 16 20 C 0.04 0.64 1.77 -65.86 -0.12 0.53 16 21 C -0.11 -1.47 5.61 -24.55 -0.14 -1.61 16 22 C -0.12 -1.58 6.82 -25.07 -0.17 -1.75 16 23 C -0.12 -1.70 6.80 -25.61 -0.17 -1.88 16 24 C -0.13 -2.08 5.17 -25.61 -0.13 -2.21 16 25 C 0.42 10.49 2.81 37.16 0.10 10.60 16 26 F -0.21 -5.10 16.94 2.25 0.04 -5.06 16 27 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 28 F -0.22 -5.47 15.68 2.25 0.04 -5.44 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.40 6.90 8.40 -40.82 -0.34 6.56 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.24 7.52 -51.93 -0.39 0.85 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.65 7.78 -51.93 -0.40 0.24 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.78 5.22 -51.93 -0.27 1.51 16 38 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 45 H 0.08 1.65 5.24 -51.94 -0.27 1.38 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -28.26 352.87 -8.73 -36.99 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.67 Total: 9.00 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.76 Total: 4.12 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.76 Total: -44.34 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.07 Total: -11.70 kcal Atomic # 9 Polarization: -14.33 SS G_CDS: 0.10 Total: -14.22 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.26 -8.73 -36.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.092 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds