Wall clock time and date at job start Tue Mar 31 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47039 * 269.99915 * 3 2 1 5 5 H 1.48498 * 109.46975 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47221 * 149.99796 * 3 2 1 7 7 C 1.37881 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47165 * 59.99538 * 9 7 2 11 11 N 1.46494 * 109.47065 * 179.97438 * 9 7 2 12 12 C 1.34782 * 120.00260 * 204.99710 * 11 9 7 13 13 O 1.21288 * 119.99316 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00277 * 180.02562 * 12 11 9 15 15 H 1.08994 * 110.00707 * 0.81998 * 14 12 11 16 16 C 1.54316 * 109.89003 * 121.94056 * 14 12 11 17 17 C 1.55134 * 103.02029 * 141.68585 * 16 14 12 18 18 C 1.54902 * 101.65379 * 324.34662 * 17 16 14 19 19 N 1.47445 * 109.88466 * 239.70944 * 14 12 11 20 20 C 1.46899 * 111.00323 * 3.84836 * 19 14 12 21 21 C 1.55236 * 110.46795 * 182.05242 * 20 19 14 22 22 C 1.54887 * 102.58626 * 203.39883 * 21 20 19 23 23 C 1.54267 * 104.31547 * 37.93070 * 22 21 20 24 24 C 1.53875 * 106.59847 * 336.32247 * 23 22 21 25 25 C 1.52998 * 109.46812 * 300.00005 * 9 7 2 26 26 F 1.39904 * 109.47140 * 299.99540 * 25 9 7 27 27 F 1.39897 * 109.47376 * 59.99974 * 25 9 7 28 28 F 1.39903 * 109.46897 * 180.02562 * 25 9 7 29 29 H 0.97002 * 120.00048 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00066 * 25.00122 * 11 9 7 31 31 H 1.09001 * 110.70280 * 260.07144 * 16 14 12 32 32 H 1.09001 * 110.70340 * 23.30204 * 16 14 12 33 33 H 1.09004 * 110.98975 * 82.43770 * 17 16 14 34 34 H 1.08997 * 110.99125 * 206.21375 * 17 16 14 35 35 H 1.08997 * 110.37411 * 278.23491 * 18 17 16 36 36 H 1.09006 * 110.37208 * 155.89938 * 18 17 16 37 37 H 1.08997 * 110.43453 * 304.70590 * 20 19 14 38 38 H 1.08997 * 110.90210 * 85.10918 * 21 20 19 39 39 H 1.09002 * 110.76536 * 321.62141 * 21 20 19 40 40 H 1.08999 * 110.48600 * 279.18463 * 22 21 20 41 41 H 1.08996 * 110.49156 * 156.67464 * 22 21 20 42 42 H 1.09000 * 110.03246 * 95.61081 * 23 22 21 43 43 H 1.09004 * 110.02911 * 216.99042 * 23 22 21 44 44 H 1.09004 * 110.02589 * 119.28450 * 24 23 22 45 45 H 1.08989 * 110.03377 * 240.66601 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2031 -3.6126 0.0005 12 6 1.8370 -4.8123 -0.4927 13 8 0.7195 -4.9698 -0.9370 14 6 2.8161 -5.9579 -0.4922 15 1 3.7591 -5.6423 -0.0458 16 6 2.2325 -7.1470 0.2994 17 6 2.6937 -8.3767 -0.5264 18 6 2.6087 -7.8313 -1.9738 19 7 3.0453 -6.4224 -1.8727 20 6 2.3283 -5.5785 -2.8380 21 6 2.5361 -6.1089 -4.2820 22 6 2.2755 -4.8494 -5.1450 23 6 2.8967 -3.6948 -4.3320 24 6 2.9303 -4.1584 -2.8651 25 6 0.3710 -2.5799 1.2495 26 9 1.1749 -2.5056 2.3920 27 9 -0.5381 -1.5166 1.2489 28 9 -0.3280 -3.7917 1.2498 29 1 -0.4850 0.8401 -0.0004 30 1 3.0969 -3.4865 0.3556 31 1 2.6484 -7.1810 1.3063 32 1 1.1444 -7.0910 0.3324 33 1 3.7167 -8.6553 -0.2736 34 1 2.0157 -9.2184 -0.3852 35 1 1.5835 -7.8856 -2.3401 36 1 3.2769 -8.3895 -2.6295 37 1 1.2669 -5.5383 -2.5935 38 1 1.8159 -6.8930 -4.5157 39 1 3.5566 -6.4667 -4.4192 40 1 1.2050 -4.6912 -5.2755 41 1 2.7673 -4.9418 -6.1133 42 1 3.9087 -3.4932 -4.6832 43 1 2.2833 -2.7988 -4.4273 44 1 3.9586 -4.1817 -2.5045 45 1 2.3335 -3.4872 -2.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928814037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:18 Heat of formation + Delta-G solvation = -184.594386 kcal Electronic energy + Delta-G solvation = -32250.754694 eV Core-core repulsion = 27659.865517 eV Total energy + Delta-G solvation = -4590.889177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 10.53 seconds Orbital eigenvalues (eV) -50.44812 -48.08361 -47.75898 -42.00691 -39.08248 -37.74509 -36.45969 -34.49676 -32.36338 -31.43730 -29.76459 -29.12601 -27.59146 -26.61455 -24.36239 -22.75177 -22.47476 -21.56387 -20.94856 -20.70790 -19.21200 -18.89095 -18.70327 -18.27204 -17.78729 -17.26941 -17.03709 -16.64639 -16.22507 -15.68553 -15.54880 -15.12080 -15.00158 -14.87009 -14.53340 -14.47971 -14.32013 -14.21423 -14.05631 -13.96377 -13.87767 -13.63080 -13.39826 -13.19041 -12.84188 -12.69384 -12.57039 -12.26514 -12.22049 -12.11099 -11.97483 -11.84725 -11.79665 -11.69191 -11.55983 -11.46325 -11.29718 -10.96067 -10.69100 -10.04949 -9.20606 -8.22780 -6.53153 1.44250 1.45090 1.55207 1.56900 2.17980 2.37934 2.51560 2.91916 2.98043 3.49015 3.60156 3.71440 3.78236 3.80827 3.85956 3.91611 4.08423 4.17418 4.23634 4.37694 4.54085 4.58113 4.61834 4.64687 4.78688 4.80645 4.81325 4.89357 4.91098 4.98149 5.04664 5.07893 5.10692 5.21138 5.29256 5.30291 5.34628 5.43620 5.49419 5.54583 5.63997 5.92634 6.08565 6.51604 6.70002 7.15818 7.33410 8.69670 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.005177 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.000995 B = 5407.560489 C = 6723.644613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.979 3.021 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.557 4.557 8 H 0.091 0.909 9 C 0.259 3.741 10 H 0.042 0.958 11 N -0.703 5.703 12 C 0.502 3.498 13 O -0.572 6.572 14 C 0.055 3.945 15 H 0.120 0.880 16 C -0.131 4.131 17 C -0.113 4.113 18 C 0.036 3.964 19 N -0.491 5.491 20 C 0.043 3.957 21 C -0.102 4.102 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.125 4.125 25 C 0.412 3.588 26 F -0.203 7.203 27 F -0.152 7.152 28 F -0.221 7.221 29 H 0.267 0.733 30 H 0.411 0.589 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.034 0.966 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.359 -12.863 -4.284 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.594 4.594 8 H 0.109 0.891 9 C 0.152 3.848 10 H 0.060 0.940 11 N -0.353 5.353 12 C 0.290 3.710 13 O -0.451 6.451 14 C -0.056 4.056 15 H 0.137 0.863 16 C -0.169 4.169 17 C -0.151 4.151 18 C -0.091 4.091 19 N -0.216 5.216 20 C -0.065 4.065 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.164 4.164 25 C 0.356 3.644 26 F -0.185 7.185 27 F -0.133 7.133 28 F -0.203 7.203 29 H 0.077 0.923 30 H 0.248 0.752 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.899 -12.810 -4.689 16.287 hybrid contribution -1.141 1.353 0.846 1.962 sum 7.758 -11.457 -3.843 14.360 Atomic orbital electron populations 1.70531 1.07487 1.28044 1.44879 1.25964 0.95816 1.03599 0.93511 0.85221 0.78625 0.77335 0.78566 1.19578 1.21100 1.18187 1.21195 0.94419 0.88328 1.55411 0.89126 1.19184 0.88777 0.87583 0.89269 0.93989 1.46091 1.16945 1.10070 1.62214 1.21581 0.88619 0.84539 0.76307 1.90600 1.23660 1.83838 1.47005 1.22726 0.97489 0.92661 0.92684 0.86261 1.22782 1.00239 0.93570 1.00349 1.22691 1.03387 0.96336 0.92653 1.23203 0.99188 0.87959 0.98728 1.64310 1.53450 1.02995 1.00835 1.23316 0.96946 0.92939 0.93331 1.22512 1.02450 0.97143 0.91860 1.22292 1.00217 0.94227 0.98973 1.22033 1.01341 0.98016 0.94239 1.22323 1.01137 0.95138 0.97760 1.23382 0.80857 0.72287 0.87866 1.92986 1.74140 1.96145 1.55209 1.93375 1.69043 1.54561 1.96323 1.93056 1.81686 1.48479 1.97032 0.92268 0.75237 0.88362 0.93203 0.88296 0.89237 0.94776 0.87710 0.92818 0.91482 0.89478 0.93028 0.89353 0.90313 0.93698 0.90780 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.74 9.50 21.45 0.20 -48.54 16 2 C 0.02 0.84 5.20 84.66 0.44 1.28 16 3 Si 0.98 40.65 29.54 68.60 2.03 42.67 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.56 -27.94 8.46 25.60 0.22 -27.72 16 8 H 0.09 4.21 7.74 -2.91 -0.02 4.19 16 9 C 0.26 12.89 1.76 44.24 0.08 12.97 16 10 H 0.04 2.45 7.54 -2.39 -0.02 2.43 16 11 N -0.70 -28.11 4.02 -446.10 -1.79 -29.91 16 12 C 0.50 19.22 3.13 87.66 0.27 19.49 16 13 O -0.57 -26.60 12.34 -3.05 -0.04 -26.64 16 14 C 0.06 1.57 3.63 44.51 0.16 1.74 16 15 H 0.12 2.86 7.94 -2.39 -0.02 2.84 16 16 C -0.13 -3.22 6.43 31.77 0.20 -3.02 16 17 C -0.11 -2.04 7.08 31.98 0.23 -1.81 16 18 C 0.04 0.79 5.84 86.77 0.51 1.29 16 19 N -0.49 -13.03 4.99 -832.94 -4.16 -17.19 16 20 C 0.04 1.33 1.77 46.11 0.08 1.42 16 21 C -0.10 -2.47 5.61 32.01 0.18 -2.29 16 22 C -0.12 -2.93 6.82 31.67 0.22 -2.72 16 23 C -0.12 -3.40 6.80 31.32 0.21 -3.18 16 24 C -0.13 -4.13 5.17 31.32 0.16 -3.97 16 25 C 0.41 21.44 2.81 71.98 0.20 21.65 16 26 F -0.20 -9.96 16.94 44.97 0.76 -9.19 16 27 F -0.15 -8.64 12.91 44.97 0.58 -8.06 16 28 F -0.22 -11.45 15.68 44.97 0.71 -10.74 16 29 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.41 14.11 8.40 -92.71 -0.78 13.34 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.54 7.52 -2.39 -0.02 1.52 16 33 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.03 0.85 7.78 -2.39 -0.02 0.83 16 36 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.05 2.15 5.22 -2.39 -0.01 2.14 16 38 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 45 H 0.04 1.85 5.24 -2.39 -0.01 1.84 16 Total: -1.00 -64.01 352.87 1.69 -62.31 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.24 Total: 30.16 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 3.16 Total: 15.13 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -5.74 Total: -95.63 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.04 Total: -26.64 kcal Atomic # 9 Polarization: -30.05 SS G_CDS: 2.05 Total: -28.00 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -64.01 1.69 -62.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.280 kcal (2) G-P(sol) polarization free energy of solvation -64.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.53 seconds