Wall clock time and date at job start Tue Mar 31 2020 22:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00115 * 2 1 4 4 H 1.48498 * 109.46921 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47189 * 29.99868 * 3 2 1 6 6 H 1.48502 * 109.47359 * 150.00033 * 3 2 1 7 7 C 1.37882 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99916 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99561 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47284 * 300.00062 * 9 7 2 11 11 O 1.42897 * 109.47421 * 60.00345 * 9 7 2 12 12 C 1.53002 * 109.46948 * 180.02562 * 9 7 2 13 13 N 1.46908 * 109.47095 * 173.96818 * 12 9 7 14 14 C 1.46898 * 110.99819 * 201.78307 * 13 12 9 15 15 C 1.53004 * 109.47289 * 73.03066 * 14 13 12 16 16 C 1.50702 * 109.47118 * 174.75806 * 15 14 13 17 17 N 1.34775 * 119.99716 * 180.02562 * 16 15 14 18 18 O 1.21276 * 119.99882 * 359.97438 * 16 15 14 19 19 C 1.46895 * 110.99934 * 77.82726 * 13 12 9 20 20 H 1.08998 * 109.43880 * 329.13745 * 19 13 12 21 21 C 1.53063 * 109.40300 * 209.23895 * 19 13 12 22 22 C 1.53405 * 108.30508 * 191.76435 * 21 19 13 23 23 O 1.42832 * 108.37414 * 64.71689 * 22 21 19 24 24 C 1.35841 * 117.85680 * 310.82005 * 23 22 21 25 25 C 1.39156 * 118.49763 * 197.06580 * 24 23 22 26 26 C 1.37964 * 120.21142 * 180.29525 * 25 24 23 27 27 C 1.38294 * 119.96472 * 359.70586 * 26 25 24 28 28 C 1.38108 * 119.97731 * 0.44564 * 27 26 25 29 29 C 1.38372 * 121.80960 * 17.20997 * 24 23 22 30 30 H 0.97001 * 120.00096 * 359.97438 * 1 2 3 31 31 H 0.96699 * 114.00377 * 59.99414 * 11 9 7 32 32 H 1.09005 * 109.47270 * 53.97055 * 12 9 7 33 33 H 1.08998 * 109.47330 * 293.96970 * 12 9 7 34 34 H 1.09001 * 109.47171 * 193.03075 * 14 13 12 35 35 H 1.09005 * 109.47086 * 313.03102 * 14 13 12 36 36 H 1.09000 * 109.46971 * 294.75399 * 15 14 13 37 37 H 1.09004 * 109.46960 * 54.75546 * 15 14 13 38 38 H 0.96994 * 120.00092 * 359.97438 * 17 16 15 39 39 H 0.97004 * 119.99871 * 179.97438 * 17 16 15 40 40 H 1.09000 * 109.70162 * 311.47342 * 21 19 13 41 41 H 1.09000 * 109.69756 * 72.02258 * 21 19 13 42 42 H 1.08998 * 109.68689 * 184.43939 * 22 21 19 43 43 H 1.09004 * 109.68057 * 304.96240 * 22 21 19 44 44 H 1.08000 * 119.88890 * 0.27746 * 25 24 23 45 45 H 1.08007 * 120.01702 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00655 * 180.17346 * 27 26 25 47 47 H 1.07993 * 119.83683 * 179.81830 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 1 3.8744 -0.6809 -0.8905 11 8 3.9883 -0.5198 1.1661 12 6 4.0214 -2.6366 0.0001 13 7 5.4832 -2.6392 -0.1460 14 6 5.9586 -3.9308 -0.6596 15 6 5.5989 -4.0540 -2.1416 16 6 6.1975 -5.3192 -2.7003 17 7 6.0106 -5.6379 -3.9964 18 8 6.8481 -6.0501 -1.9838 19 6 6.1398 -2.3039 1.1245 20 1 5.5010 -1.6310 1.6964 21 6 7.4777 -1.6170 0.8397 22 6 8.2712 -1.5452 2.1506 23 8 8.5765 -2.8774 2.5656 24 6 7.5637 -3.7823 2.5904 25 6 7.7404 -4.9569 3.3155 26 6 6.7373 -5.9030 3.3597 27 6 5.5494 -5.6822 2.6869 28 6 5.3718 -4.5191 1.9637 29 6 6.3752 -3.5655 1.9158 30 1 -0.4850 0.8400 0.0004 31 1 3.7032 -0.9227 1.9976 32 1 3.5723 -3.1809 -0.8307 33 1 3.7493 -3.1182 0.9393 34 1 7.0405 -3.9926 -0.5419 35 1 5.4857 -4.7396 -0.1025 36 1 4.5149 -4.0859 -2.2510 37 1 5.9938 -3.1949 -2.6840 38 1 5.4906 -5.0531 -4.5695 39 1 6.3962 -6.4521 -4.3562 40 1 8.0371 -2.1931 0.1027 41 1 7.3005 -0.6102 0.4613 42 1 9.1952 -0.9896 1.9906 43 1 7.6727 -1.0500 2.9153 44 1 8.6659 -5.1284 3.8450 45 1 6.8779 -6.8136 3.9232 46 1 4.7626 -6.4211 2.7234 47 1 4.4444 -4.3503 1.4367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930647883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:38 Heat of formation + Delta-G solvation = -80.560185 kcal Electronic energy + Delta-G solvation = -30652.050698 eV Core-core repulsion = 26607.529523 eV Total energy + Delta-G solvation = -4044.521175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99438 -39.46755 -38.02301 -37.23887 -35.54179 -33.71485 -32.84452 -32.28812 -30.70569 -30.27346 -30.17568 -28.28647 -25.34501 -24.84611 -23.48148 -22.39697 -21.86776 -20.69038 -20.24327 -19.39068 -17.70539 -17.43185 -17.18984 -16.79115 -16.34793 -15.98324 -15.61496 -15.26001 -14.92846 -14.88121 -14.63490 -14.34971 -13.93418 -13.92852 -13.64267 -13.34116 -13.18248 -13.06260 -12.67379 -12.53457 -12.36290 -11.85813 -11.72383 -11.68475 -11.34230 -11.19398 -10.99905 -10.89311 -10.71547 -10.62324 -10.39761 -10.12254 -10.00246 -9.93256 -9.76283 -9.09649 -8.69854 -8.61275 -8.33085 -7.98698 -7.79268 -6.17389 -4.29203 1.43459 1.56882 2.64457 3.36423 3.38520 3.44478 3.46257 3.71421 3.86702 4.28360 4.49603 4.79182 4.86694 4.90699 4.93804 5.10151 5.15546 5.18159 5.18682 5.29956 5.37102 5.43305 5.48182 5.59782 5.70086 5.76517 5.77438 5.85413 5.91361 6.02210 6.07519 6.13597 6.22521 6.28495 6.35647 6.42046 6.57661 6.64013 6.68639 6.69645 6.89571 7.16675 7.24963 7.40986 7.47474 7.57180 7.67420 8.22033 8.22897 8.76655 8.93522 9.47234 10.93095 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.004865 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.784251 B = 5753.531628 C = 7198.658607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.873 3.127 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.216 1.216 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.203 3.797 10 H 0.064 0.936 11 O -0.575 6.575 12 C 0.026 3.974 13 N -0.521 5.521 14 C 0.064 3.936 15 C -0.141 4.141 16 C 0.519 3.481 17 N -0.860 5.860 18 O -0.545 6.545 19 C 0.116 3.884 20 H 0.124 0.876 21 C -0.142 4.142 22 C 0.062 3.938 23 O -0.321 6.321 24 C 0.136 3.864 25 C -0.156 4.156 26 C -0.090 4.090 27 C -0.154 4.154 28 C -0.088 4.088 29 C -0.177 4.177 30 H 0.265 0.735 31 H 0.352 0.648 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.402 0.598 39 H 0.397 0.603 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 -8.173 -0.690 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.699 3.301 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.138 1.138 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.146 3.854 10 H 0.081 0.919 11 O -0.382 6.382 12 C -0.101 4.101 13 N -0.243 5.243 14 C -0.065 4.065 15 C -0.182 4.182 16 C 0.304 3.696 17 N -0.424 5.424 18 O -0.422 6.422 19 C 0.008 3.992 20 H 0.141 0.859 21 C -0.180 4.180 22 C -0.014 4.014 23 O -0.235 6.235 24 C 0.090 3.910 25 C -0.174 4.174 26 C -0.108 4.108 27 C -0.172 4.172 28 C -0.106 4.106 29 C -0.179 4.179 30 H 0.074 0.926 31 H 0.198 0.802 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.231 0.769 39 H 0.228 0.772 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.094 -7.677 -0.836 16.955 hybrid contribution -0.695 -0.218 0.119 0.738 sum 14.399 -7.895 -0.717 16.437 Atomic orbital electron populations 1.69957 1.06845 1.27504 1.48646 1.24987 0.94573 0.99988 0.92447 0.87005 0.82998 0.81728 0.78354 1.21476 1.22491 1.13822 1.21486 0.89853 0.94739 1.54259 0.91149 1.19778 0.92958 0.87045 0.85619 0.91860 1.86694 1.77085 1.57971 1.16420 1.23128 0.85215 1.01281 1.00444 1.62257 1.06818 1.29418 1.25758 1.22034 1.00883 0.91220 0.92322 1.21694 1.02675 0.95366 0.98434 1.20836 0.79404 0.87600 0.81785 1.43923 1.58062 1.28607 1.11781 1.90746 1.40314 1.52618 1.58537 1.20992 0.96469 0.92580 0.89205 0.85927 1.22157 0.95809 1.03014 0.97025 1.23012 1.01070 0.81031 0.96254 1.85941 1.33858 1.20262 1.83472 1.18687 0.87233 0.90141 0.94912 1.20526 1.00726 0.93883 1.02308 1.20848 0.93056 0.98198 0.98700 1.20986 0.98063 0.98166 1.00014 1.21341 0.98731 0.93319 0.97212 1.20690 0.94740 1.00109 1.02361 0.92581 0.80159 0.90744 0.94011 0.90711 0.93062 0.88462 0.87974 0.76948 0.77241 0.90964 0.89093 0.87733 0.91658 0.85759 0.85895 0.86217 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 3 Si 0.87 20.90 26.99 -169.99 -4.59 16.31 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.22 -4.98 5.30 56.52 0.30 -4.68 16 7 C -0.57 -14.64 9.34 -34.44 -0.32 -14.96 16 8 H 0.07 1.98 7.99 -52.49 -0.42 1.56 16 9 C 0.20 4.30 2.54 -27.88 -0.07 4.23 16 10 H 0.06 1.42 7.57 -51.93 -0.39 1.03 16 11 O -0.58 -11.67 7.65 -35.23 -0.27 -11.94 16 12 C 0.03 0.46 3.95 -3.82 -0.02 0.45 16 13 N -0.52 -8.09 4.19 -227.95 -0.96 -9.05 16 14 C 0.06 0.94 2.99 -3.82 -0.01 0.93 16 15 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 16 C 0.52 6.61 8.10 -10.99 -0.09 6.52 16 17 N -0.86 -7.27 8.87 31.22 0.28 -7.00 16 18 O -0.55 -9.27 16.75 5.56 0.09 -9.17 16 19 C 0.12 1.75 2.12 -68.80 -0.15 1.60 16 20 H 0.12 2.01 4.78 -51.93 -0.25 1.76 16 21 C -0.14 -1.91 5.72 -26.49 -0.15 -2.06 16 22 C 0.06 0.75 7.03 37.37 0.26 1.01 16 23 O -0.32 -4.64 10.27 -19.24 -0.20 -4.83 16 24 C 0.14 2.05 6.47 -39.19 -0.25 1.80 16 25 C -0.16 -2.14 9.94 -39.34 -0.39 -2.53 16 26 C -0.09 -1.15 10.04 -39.66 -0.40 -1.55 16 27 C -0.15 -2.11 10.05 -39.61 -0.40 -2.51 16 28 C -0.09 -1.33 6.75 -39.53 -0.27 -1.60 16 29 C -0.18 -2.69 4.28 -104.44 -0.45 -3.14 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.35 6.48 8.57 45.56 0.39 6.87 16 32 H 0.07 1.30 6.36 -51.93 -0.33 0.97 16 33 H 0.04 0.74 5.21 -51.93 -0.27 0.47 16 34 H 0.07 1.22 6.68 -51.93 -0.35 0.88 16 35 H 0.05 0.82 5.08 -51.93 -0.26 0.56 16 36 H 0.10 1.17 6.75 -51.93 -0.35 0.82 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.40 2.32 8.83 -40.82 -0.36 1.96 16 39 H 0.40 2.92 8.93 -40.82 -0.36 2.56 16 40 H 0.07 1.01 7.29 -51.93 -0.38 0.63 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.13 2.06 4.12 -52.49 -0.22 1.85 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -33.00 361.91 -8.12 -41.12 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -5.75 Total: 16.12 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.95 Total: -11.50 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.09 Total: -41.56 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.37 Total: -25.94 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.59 Total: 16.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.00 -8.12 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930647883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.443 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds