Wall clock time and date at job start Tue Mar 31 2020 22:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00115 * 2 1 4 4 H 1.48498 * 109.46921 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47189 * 29.99868 * 3 2 1 6 6 H 1.48502 * 109.47359 * 150.00033 * 3 2 1 7 7 C 1.37882 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99916 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99561 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47284 * 300.00062 * 9 7 2 11 11 O 1.42897 * 109.47421 * 60.00345 * 9 7 2 12 12 C 1.53002 * 109.46948 * 180.02562 * 9 7 2 13 13 N 1.46908 * 109.47095 * 173.96818 * 12 9 7 14 14 C 1.46898 * 110.99819 * 201.78307 * 13 12 9 15 15 C 1.53004 * 109.47289 * 73.03066 * 14 13 12 16 16 C 1.50702 * 109.47118 * 174.75806 * 15 14 13 17 17 N 1.34775 * 119.99716 * 180.02562 * 16 15 14 18 18 O 1.21276 * 119.99882 * 359.97438 * 16 15 14 19 19 C 1.46895 * 110.99934 * 77.82726 * 13 12 9 20 20 H 1.08998 * 109.43880 * 329.13745 * 19 13 12 21 21 C 1.53063 * 109.40300 * 209.23895 * 19 13 12 22 22 C 1.53405 * 108.30508 * 191.76435 * 21 19 13 23 23 O 1.42832 * 108.37414 * 64.71689 * 22 21 19 24 24 C 1.35841 * 117.85680 * 310.82005 * 23 22 21 25 25 C 1.39156 * 118.49763 * 197.06580 * 24 23 22 26 26 C 1.37964 * 120.21142 * 180.29525 * 25 24 23 27 27 C 1.38294 * 119.96472 * 359.70586 * 26 25 24 28 28 C 1.38108 * 119.97731 * 0.44564 * 27 26 25 29 29 C 1.38372 * 121.80960 * 17.20997 * 24 23 22 30 30 H 0.97001 * 120.00096 * 359.97438 * 1 2 3 31 31 H 0.96699 * 114.00377 * 59.99414 * 11 9 7 32 32 H 1.09005 * 109.47270 * 53.97055 * 12 9 7 33 33 H 1.08998 * 109.47330 * 293.96970 * 12 9 7 34 34 H 1.09001 * 109.47171 * 193.03075 * 14 13 12 35 35 H 1.09005 * 109.47086 * 313.03102 * 14 13 12 36 36 H 1.09000 * 109.46971 * 294.75399 * 15 14 13 37 37 H 1.09004 * 109.46960 * 54.75546 * 15 14 13 38 38 H 0.96994 * 120.00092 * 359.97438 * 17 16 15 39 39 H 0.97004 * 119.99871 * 179.97438 * 17 16 15 40 40 H 1.09000 * 109.70162 * 311.47342 * 21 19 13 41 41 H 1.09000 * 109.69756 * 72.02258 * 21 19 13 42 42 H 1.08998 * 109.68689 * 184.43939 * 22 21 19 43 43 H 1.09004 * 109.68057 * 304.96240 * 22 21 19 44 44 H 1.08000 * 119.88890 * 0.27746 * 25 24 23 45 45 H 1.08007 * 120.01702 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00655 * 180.17346 * 27 26 25 47 47 H 1.07993 * 119.83683 * 179.81830 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 1 3.8744 -0.6809 -0.8905 11 8 3.9883 -0.5198 1.1661 12 6 4.0214 -2.6366 0.0001 13 7 5.4832 -2.6392 -0.1460 14 6 5.9586 -3.9308 -0.6596 15 6 5.5989 -4.0540 -2.1416 16 6 6.1975 -5.3192 -2.7003 17 7 6.0106 -5.6379 -3.9964 18 8 6.8481 -6.0501 -1.9838 19 6 6.1398 -2.3039 1.1245 20 1 5.5010 -1.6310 1.6964 21 6 7.4777 -1.6170 0.8397 22 6 8.2712 -1.5452 2.1506 23 8 8.5765 -2.8774 2.5656 24 6 7.5637 -3.7823 2.5904 25 6 7.7404 -4.9569 3.3155 26 6 6.7373 -5.9030 3.3597 27 6 5.5494 -5.6822 2.6869 28 6 5.3718 -4.5191 1.9637 29 6 6.3752 -3.5655 1.9158 30 1 -0.4850 0.8400 0.0004 31 1 3.7032 -0.9227 1.9976 32 1 3.5723 -3.1809 -0.8307 33 1 3.7493 -3.1182 0.9393 34 1 7.0405 -3.9926 -0.5419 35 1 5.4857 -4.7396 -0.1025 36 1 4.5149 -4.0859 -2.2510 37 1 5.9938 -3.1949 -2.6840 38 1 5.4906 -5.0531 -4.5695 39 1 6.3962 -6.4521 -4.3562 40 1 8.0371 -2.1931 0.1027 41 1 7.3005 -0.6102 0.4613 42 1 9.1952 -0.9896 1.9906 43 1 7.6727 -1.0500 2.9153 44 1 8.6659 -5.1284 3.8450 45 1 6.8779 -6.8136 3.9232 46 1 4.7626 -6.4211 2.7234 47 1 4.4444 -4.3503 1.4367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930647883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:37 Heat of formation + Delta-G solvation = -107.315740 kcal Electronic energy + Delta-G solvation = -30653.210906 eV Core-core repulsion = 26607.529523 eV Total energy + Delta-G solvation = -4045.681383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.11059 -40.51320 -39.29838 -38.35028 -37.08718 -34.66427 -34.38963 -33.91109 -31.89556 -31.44149 -31.26526 -29.82484 -26.90347 -26.02642 -24.56370 -23.60355 -23.10150 -22.23980 -21.27831 -20.50779 -19.31089 -18.61867 -18.30689 -17.84565 -17.39931 -17.05017 -16.84477 -16.78745 -16.40097 -16.22134 -15.89519 -15.63761 -15.41483 -15.01199 -14.95850 -14.69115 -14.41221 -14.25006 -14.14865 -13.62906 -13.57105 -13.49506 -13.00375 -12.84577 -12.73813 -12.59508 -12.47886 -12.31499 -11.96577 -11.89164 -11.79442 -11.61235 -11.25530 -11.04672 -11.01645 -10.74935 -10.64284 -10.06945 -9.62846 -9.26024 -8.98817 -8.29933 -6.43996 0.35543 0.47896 1.45302 1.51441 1.64230 1.80527 2.37863 2.48629 2.49774 2.79877 3.08917 3.13743 3.67163 3.77305 3.83949 3.93151 3.99895 4.08269 4.14644 4.19542 4.28390 4.31129 4.38944 4.46110 4.54668 4.57113 4.60792 4.69921 4.78026 4.81394 4.89759 4.99288 5.06295 5.10327 5.16850 5.22939 5.35010 5.48504 5.51643 5.57838 5.61526 5.85916 5.91519 6.09781 6.18931 6.22623 6.46073 6.51058 6.69403 7.20033 7.35956 7.38533 8.84028 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.004865 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.784251 B = 5753.531628 C = 7198.658607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.287 1.287 5 H -0.306 1.306 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.037 0.963 9 C 0.215 3.785 10 H 0.059 0.941 11 O -0.573 6.573 12 C 0.040 3.960 13 N -0.515 5.515 14 C 0.074 3.926 15 C -0.137 4.137 16 C 0.519 3.481 17 N -0.837 5.837 18 O -0.593 6.593 19 C 0.113 3.887 20 H 0.111 0.889 21 C -0.136 4.136 22 C 0.061 3.939 23 O -0.329 6.329 24 C 0.121 3.879 25 C -0.164 4.164 26 C -0.086 4.086 27 C -0.163 4.163 28 C -0.103 4.103 29 C -0.187 4.187 30 H 0.265 0.735 31 H 0.362 0.638 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.418 0.582 39 H 0.407 0.593 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.134 0.866 43 H 0.069 0.931 44 H 0.142 0.858 45 H 0.154 0.846 46 H 0.135 0.865 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.298 -8.118 -0.831 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.762 3.238 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.120 1.120 7 C -0.598 4.598 8 H 0.055 0.945 9 C 0.157 3.843 10 H 0.077 0.923 11 O -0.380 6.380 12 C -0.088 4.088 13 N -0.237 5.237 14 C -0.054 4.054 15 C -0.178 4.178 16 C 0.305 3.695 17 N -0.401 5.401 18 O -0.474 6.474 19 C 0.005 3.995 20 H 0.129 0.871 21 C -0.174 4.174 22 C -0.014 4.014 23 O -0.244 6.244 24 C 0.075 3.925 25 C -0.182 4.182 26 C -0.104 4.104 27 C -0.181 4.181 28 C -0.121 4.121 29 C -0.190 4.190 30 H 0.073 0.927 31 H 0.210 0.790 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.249 0.751 39 H 0.238 0.762 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.087 0.913 44 H 0.160 0.840 45 H 0.172 0.828 46 H 0.153 0.847 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.127 -7.626 -1.020 18.776 hybrid contribution -1.344 -0.339 0.162 1.396 sum 15.783 -7.965 -0.858 17.700 Atomic orbital electron populations 1.70089 1.08612 1.28229 1.51200 1.25810 0.95112 1.03506 0.92493 0.86027 0.82130 0.77425 0.78251 1.21373 1.23337 1.12027 1.21820 0.92413 0.93141 1.52441 0.94517 1.19511 0.89873 0.89158 0.85763 0.92318 1.86621 1.76698 1.58103 1.16620 1.22815 0.86699 0.98772 1.00465 1.62241 1.05322 1.29852 1.26246 1.21881 0.99657 0.90218 0.93679 1.21651 1.03067 0.96006 0.97032 1.20832 0.78869 0.87171 0.82668 1.43709 1.56973 1.28905 1.10489 1.90730 1.42652 1.53987 1.60001 1.20990 0.97048 0.92634 0.88793 0.87127 1.22103 0.94872 1.02714 0.97727 1.23205 1.02413 0.80374 0.95414 1.85931 1.33843 1.21023 1.83580 1.18922 0.87304 0.90919 0.95366 1.20866 1.01690 0.93580 1.02097 1.21210 0.92180 0.98976 0.98052 1.21266 0.99072 0.98028 0.99747 1.21353 0.98474 0.94240 0.97985 1.20679 0.95125 1.00204 1.02967 0.92675 0.79013 0.90737 0.94253 0.92132 0.94319 0.87837 0.86514 0.75058 0.76194 0.91631 0.88697 0.84844 0.91284 0.84045 0.82844 0.84702 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 13.96 21.45 0.30 -56.37 16 2 C 0.03 1.67 5.47 84.66 0.46 2.13 16 3 Si 0.94 43.09 26.99 68.60 1.85 44.94 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.20 -8.51 5.30 99.48 0.53 -7.98 16 7 C -0.56 -29.27 9.34 25.60 0.24 -29.03 16 8 H 0.04 2.12 7.99 -2.91 -0.02 2.10 16 9 C 0.21 8.92 2.54 29.85 0.08 9.00 16 10 H 0.06 2.54 7.57 -2.39 -0.02 2.52 16 11 O -0.57 -22.38 7.65 -148.98 -1.14 -23.52 16 12 C 0.04 1.39 3.95 86.30 0.34 1.73 16 13 N -0.51 -15.63 4.19 -875.09 -3.67 -19.30 16 14 C 0.07 2.16 2.99 86.30 0.26 2.42 16 15 C -0.14 -3.27 5.70 29.85 0.17 -3.10 16 16 C 0.52 12.67 8.10 87.66 0.71 13.38 16 17 N -0.84 -12.51 8.87 -173.54 -1.54 -14.05 16 18 O -0.59 -19.99 16.75 -3.02 -0.05 -20.04 16 19 C 0.11 3.35 2.12 44.21 0.09 3.44 16 20 H 0.11 3.52 4.78 -2.39 -0.01 3.51 16 21 C -0.14 -3.46 5.72 30.75 0.18 -3.29 16 22 C 0.06 1.35 7.03 72.12 0.51 1.86 16 23 O -0.33 -9.02 10.27 -91.77 -0.94 -9.96 16 24 C 0.12 3.52 6.47 22.52 0.15 3.67 16 25 C -0.16 -4.25 9.94 22.43 0.22 -4.03 16 26 C -0.09 -2.05 10.04 22.22 0.22 -1.83 16 27 C -0.16 -4.32 10.05 22.25 0.22 -4.10 16 28 C -0.10 -3.08 6.75 22.30 0.15 -2.93 16 29 C -0.19 -5.63 4.28 -19.75 -0.08 -5.71 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 31 H 0.36 12.93 8.57 -74.06 -0.63 12.30 16 32 H 0.07 2.58 6.36 -2.38 -0.02 2.56 16 33 H 0.04 1.41 5.21 -2.39 -0.01 1.39 16 34 H 0.06 1.97 6.68 -2.39 -0.02 1.96 16 35 H 0.04 1.25 5.08 -2.38 -0.01 1.24 16 36 H 0.10 2.35 6.75 -2.39 -0.02 2.33 16 37 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.42 3.76 8.83 -92.71 -0.82 2.94 16 39 H 0.41 5.17 8.93 -92.71 -0.83 4.34 16 40 H 0.06 1.76 7.29 -2.39 -0.02 1.74 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 45 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 46 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 47 H 0.12 3.86 4.12 -2.91 -0.01 3.85 16 Total: -1.00 -71.94 361.91 -2.69 -74.63 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -1.41 Total: 40.06 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 3.91 Total: -16.38 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -4.91 Total: -89.72 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -2.13 Total: -53.52 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.85 Total: 44.94 kcal Total: -71.94 -2.69 -74.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930647883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.690 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds