Wall clock time and date at job start Tue Mar 31 2020 22:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99656 * 2 1 4 4 H 1.48506 * 109.47144 * 269.99892 * 3 2 1 5 5 H 1.48496 * 109.47124 * 29.99720 * 3 2 1 6 6 H 1.48499 * 109.47351 * 150.00207 * 3 2 1 7 7 C 1.37878 * 120.00720 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99473 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47180 * 179.97438 * 9 7 2 11 11 C 1.38281 * 119.93219 * 89.99656 * 10 9 7 12 12 C 1.38115 * 120.07015 * 180.02562 * 11 10 9 13 13 C 1.38865 * 119.93062 * 359.97438 * 12 11 10 14 14 N 1.39941 * 120.07021 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00372 * 35.08842 * 14 13 12 16 16 O 1.21596 * 119.99389 * 355.36140 * 15 14 13 17 17 N 1.34772 * 120.00490 * 175.36934 * 15 14 13 18 18 C 1.48308 * 127.76721 * 359.92841 * 17 15 14 19 19 C 1.54394 * 104.53836 * 219.51766 * 18 17 15 20 20 C 1.54281 * 105.05398 * 336.26202 * 19 18 17 21 21 C 1.53001 * 110.34435 * 118.81444 * 20 19 18 22 22 O 1.42903 * 109.47146 * 180.02562 * 21 20 19 23 23 C 1.52998 * 110.34256 * 241.07651 * 20 19 18 24 24 O 1.42900 * 109.47006 * 179.97438 * 23 20 19 25 25 C 1.48146 * 127.83828 * 180.02562 * 17 15 14 26 26 C 1.38869 * 119.85900 * 0.25380 * 13 12 11 27 27 C 1.38110 * 119.92872 * 359.49936 * 26 13 12 28 28 H 0.96996 * 120.00242 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47408 * 59.99666 * 9 7 2 30 30 H 1.08998 * 109.47212 * 299.99657 * 9 7 2 31 31 H 1.07997 * 119.96061 * 0.02562 * 11 10 9 32 32 H 1.08002 * 120.03510 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99881 * 215.09183 * 14 13 12 34 34 H 1.08998 * 110.38292 * 100.79386 * 18 17 15 35 35 H 1.08997 * 110.51326 * 338.30792 * 18 17 15 36 36 H 1.08993 * 110.34368 * 217.33389 * 19 18 17 37 37 H 1.09006 * 110.33723 * 95.18426 * 19 18 17 38 38 H 1.09000 * 109.47192 * 300.00154 * 21 20 19 39 39 H 1.09000 * 109.46685 * 59.99930 * 21 20 19 40 40 H 0.96694 * 114.00108 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.46733 * 299.99566 * 23 20 19 42 42 H 1.09002 * 109.47189 * 60.00101 * 23 20 19 43 43 H 0.96702 * 114.00093 * 179.97438 * 24 23 20 44 44 H 1.08997 * 110.40978 * 21.63586 * 25 17 15 45 45 H 1.08998 * 110.40881 * 259.19360 * 25 17 15 46 46 H 1.08004 * 120.03080 * 179.71960 * 26 13 12 47 47 H 1.08007 * 119.96298 * 180.25274 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6790 -4.1689 1.1989 12 6 3.5769 -5.2183 1.2022 13 6 4.0290 -5.7472 0.0005 14 7 4.9392 -6.8101 0.0004 15 6 4.8683 -7.7581 0.9558 16 8 4.0691 -7.6460 1.8653 17 7 5.6834 -8.8302 0.9032 18 6 6.7123 -9.1397 -0.1191 19 6 6.5936 -10.6632 -0.3395 20 6 5.9612 -11.2078 0.9581 21 6 4.6185 -11.8761 0.6556 22 8 4.0496 -12.3726 1.8689 23 6 6.9091 -12.1987 1.6366 24 8 6.3059 -12.6904 2.8351 25 6 5.7530 -9.9662 1.8515 26 6 3.5804 -5.2152 -1.2013 27 6 2.6785 -4.1692 -1.1979 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6243 -2.5567 0.8903 31 1 2.3266 -3.7574 2.1332 32 1 3.9271 -5.6272 2.1385 33 1 5.6212 -6.8646 -0.6872 34 1 7.7050 -8.8857 0.2524 35 1 6.5036 -8.6043 -1.0453 36 1 7.5795 -11.1017 -0.4936 37 1 5.9486 -10.8735 -1.1927 38 1 3.9422 -11.1472 0.2093 39 1 4.7722 -12.7021 -0.0388 40 1 3.1949 -12.8097 1.7525 41 1 7.1082 -13.0311 0.9618 42 1 7.8453 -11.6969 1.8809 43 1 6.8520 -13.3255 3.3184 44 1 4.8213 -10.0524 2.4105 45 1 6.5955 -9.8424 2.5319 46 1 3.9337 -5.6215 -2.1376 47 1 2.3261 -3.7578 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932562131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:06 Heat of formation + Delta-G solvation = -91.741966 kcal Electronic energy + Delta-G solvation = -28400.467729 eV Core-core repulsion = 24355.461675 eV Total energy + Delta-G solvation = -4045.006053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84556 -39.49913 -38.04285 -36.48747 -36.28031 -34.79803 -33.12497 -32.51961 -30.33237 -30.18921 -29.73801 -27.05004 -26.24511 -25.63858 -23.57913 -22.97669 -22.25869 -20.65054 -19.78184 -19.60031 -18.49467 -17.63031 -17.23466 -16.87426 -16.50464 -16.26260 -15.69735 -15.45882 -15.17587 -14.82544 -14.49402 -14.23823 -14.11793 -13.78071 -13.58972 -13.23777 -12.96815 -12.75036 -12.68208 -12.61036 -12.40777 -11.99040 -11.93032 -11.79386 -11.50812 -11.33709 -11.23017 -10.92709 -10.79150 -10.59004 -10.35120 -10.27716 -10.12161 -10.07537 -9.81659 -9.39557 -9.22955 -8.94319 -8.38317 -8.21330 -7.30328 -5.99513 -4.03355 1.99980 2.13928 2.42404 3.17296 3.32932 3.39141 3.43732 3.55703 3.78000 3.88897 4.06484 4.41494 4.43387 4.58093 4.61800 4.65941 4.77061 4.86029 4.96863 5.06034 5.13836 5.17336 5.23491 5.34287 5.42063 5.46551 5.51291 5.55922 5.65389 5.78707 5.92819 6.02723 6.13135 6.23939 6.26902 6.67722 6.75672 7.01400 7.11297 7.23737 7.28882 7.36506 7.46640 7.57206 7.79277 7.86976 7.93241 7.96438 8.37451 8.54781 9.02043 9.60033 11.10027 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.002010 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.781372 B =13929.952550 C =14129.200486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.044 4.044 11 C -0.108 4.108 12 C -0.116 4.116 13 C 0.120 3.880 14 N -0.680 5.680 15 C 0.725 3.275 16 O -0.566 6.566 17 N -0.645 5.645 18 C 0.099 3.901 19 C -0.122 4.122 20 C -0.073 4.073 21 C 0.096 3.904 22 O -0.545 6.545 23 C 0.096 3.904 24 O -0.544 6.544 25 C 0.145 3.855 26 C -0.145 4.145 27 C -0.109 4.109 28 H 0.261 0.739 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.399 0.601 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.372 0.628 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.370 0.630 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.025 -28.229 -2.194 33.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.045 4.045 11 C -0.127 4.127 12 C -0.136 4.136 13 C 0.028 3.972 14 N -0.327 5.327 15 C 0.428 3.572 16 O -0.441 6.441 17 N -0.384 5.384 18 C -0.024 4.024 19 C -0.161 4.161 20 C -0.075 4.075 21 C 0.017 3.983 22 O -0.349 6.349 23 C 0.017 3.983 24 O -0.348 6.348 25 C 0.022 3.978 26 C -0.166 4.166 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.217 0.783 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.216 0.784 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.130 0.870 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.279 -27.300 -1.439 31.818 hybrid contribution 0.910 0.276 -0.688 1.174 sum 17.189 -27.025 -2.127 32.099 Atomic orbital electron populations 1.69958 1.06014 1.26744 1.50645 1.25022 0.94885 0.99234 0.95307 0.86542 0.79853 0.83236 0.78095 1.20652 1.21200 1.19828 1.21074 0.93046 0.89892 1.50745 0.92467 1.18346 0.92583 0.89597 0.98369 1.20703 0.96536 0.95341 0.91882 1.21017 0.97537 0.95637 0.98492 1.21164 0.99228 0.96107 0.97132 1.17307 0.95474 0.90079 0.94370 1.42445 1.35020 1.24187 1.31054 1.15326 0.80449 0.78720 0.82729 1.90964 1.39818 1.77777 1.35578 1.48153 1.38799 1.22372 1.29090 1.22382 0.92332 0.95290 0.92417 1.22518 1.01890 0.95040 0.96643 1.21585 0.95180 0.95149 0.95552 1.22007 0.93199 0.96215 0.86843 1.86695 1.38974 1.78502 1.30728 1.22062 0.93784 0.95273 0.87164 1.86769 1.46750 1.64056 1.37187 1.22083 1.03798 0.81253 0.90659 1.20695 1.00454 1.00051 0.95357 1.20849 0.97447 0.95944 0.98503 0.92889 0.95363 0.95292 0.86122 0.85259 0.76609 0.90712 0.90329 0.89520 0.90075 0.93731 0.94033 0.78270 0.93728 0.93625 0.78410 0.88587 0.91276 0.87006 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.49 9.09 -34.44 -0.31 -14.80 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.05 1.26 5.10 -29.03 -0.15 1.12 16 10 C -0.04 -0.99 5.07 -104.59 -0.53 -1.53 16 11 C -0.11 -2.31 9.69 -39.61 -0.38 -2.70 16 12 C -0.12 -2.29 8.70 -39.39 -0.34 -2.64 16 13 C 0.12 2.10 6.30 -83.69 -0.53 1.57 16 14 N -0.68 -9.42 5.31 -14.22 -0.08 -9.50 16 15 C 0.72 10.99 8.41 -86.92 -0.73 10.26 16 16 O -0.57 -11.08 14.04 5.28 0.07 -11.01 16 17 N -0.65 -7.11 3.32 -174.90 -0.58 -7.69 16 18 C 0.10 0.63 6.89 -2.32 -0.02 0.61 16 19 C -0.12 -0.60 6.30 -25.33 -0.16 -0.76 16 20 C -0.07 -0.54 0.73 -153.12 -0.11 -0.65 16 21 C 0.10 0.78 5.71 37.16 0.21 0.99 16 22 O -0.55 -5.22 10.98 -57.52 -0.63 -5.85 16 23 C 0.10 0.57 5.64 37.16 0.21 0.78 16 24 O -0.54 -4.23 11.35 -57.52 -0.65 -4.89 16 25 C 0.15 1.54 5.87 -2.42 -0.01 1.52 16 26 C -0.15 -2.45 9.97 -39.39 -0.39 -2.84 16 27 C -0.11 -2.16 9.69 -39.61 -0.38 -2.54 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 32 H 0.13 2.60 6.22 -52.49 -0.33 2.28 16 33 H 0.40 4.05 7.26 -40.82 -0.30 3.76 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.40 6.93 -51.93 -0.36 0.04 16 36 H 0.09 0.23 7.71 -51.93 -0.40 -0.17 16 37 H 0.08 0.37 7.71 -51.93 -0.40 -0.03 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.37 2.18 9.12 45.56 0.42 2.60 16 41 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.05 0.22 8.10 -51.93 -0.42 -0.21 16 43 H 0.37 1.29 9.12 45.56 0.42 1.71 16 44 H 0.10 1.35 7.17 -51.93 -0.37 0.98 16 45 H 0.07 0.69 7.83 -51.93 -0.41 0.29 16 46 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 47 H 0.12 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -37.03 383.89 -9.59 -46.62 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.49 Total: 5.87 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.73 Total: -10.08 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.08 Total: -43.26 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.21 Total: -21.75 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.03 -9.59 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.121 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds