Wall clock time and date at job start Tue Mar 31 2020 22:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99656 * 2 1 4 4 H 1.48506 * 109.47144 * 269.99892 * 3 2 1 5 5 H 1.48496 * 109.47124 * 29.99720 * 3 2 1 6 6 H 1.48499 * 109.47351 * 150.00207 * 3 2 1 7 7 C 1.37878 * 120.00720 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99473 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47180 * 179.97438 * 9 7 2 11 11 C 1.38281 * 119.93219 * 89.99656 * 10 9 7 12 12 C 1.38115 * 120.07015 * 180.02562 * 11 10 9 13 13 C 1.38865 * 119.93062 * 359.97438 * 12 11 10 14 14 N 1.39941 * 120.07021 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00372 * 35.08842 * 14 13 12 16 16 O 1.21596 * 119.99389 * 355.36140 * 15 14 13 17 17 N 1.34772 * 120.00490 * 175.36934 * 15 14 13 18 18 C 1.48308 * 127.76721 * 359.92841 * 17 15 14 19 19 C 1.54394 * 104.53836 * 219.51766 * 18 17 15 20 20 C 1.54281 * 105.05398 * 336.26202 * 19 18 17 21 21 C 1.53001 * 110.34435 * 118.81444 * 20 19 18 22 22 O 1.42903 * 109.47146 * 180.02562 * 21 20 19 23 23 C 1.52998 * 110.34256 * 241.07651 * 20 19 18 24 24 O 1.42900 * 109.47006 * 179.97438 * 23 20 19 25 25 C 1.48146 * 127.83828 * 180.02562 * 17 15 14 26 26 C 1.38869 * 119.85900 * 0.25380 * 13 12 11 27 27 C 1.38110 * 119.92872 * 359.49936 * 26 13 12 28 28 H 0.96996 * 120.00242 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47408 * 59.99666 * 9 7 2 30 30 H 1.08998 * 109.47212 * 299.99657 * 9 7 2 31 31 H 1.07997 * 119.96061 * 0.02562 * 11 10 9 32 32 H 1.08002 * 120.03510 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99881 * 215.09183 * 14 13 12 34 34 H 1.08998 * 110.38292 * 100.79386 * 18 17 15 35 35 H 1.08997 * 110.51326 * 338.30792 * 18 17 15 36 36 H 1.08993 * 110.34368 * 217.33389 * 19 18 17 37 37 H 1.09006 * 110.33723 * 95.18426 * 19 18 17 38 38 H 1.09000 * 109.47192 * 300.00154 * 21 20 19 39 39 H 1.09000 * 109.46685 * 59.99930 * 21 20 19 40 40 H 0.96694 * 114.00108 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.46733 * 299.99566 * 23 20 19 42 42 H 1.09002 * 109.47189 * 60.00101 * 23 20 19 43 43 H 0.96702 * 114.00093 * 179.97438 * 24 23 20 44 44 H 1.08997 * 110.40978 * 21.63586 * 25 17 15 45 45 H 1.08998 * 110.40881 * 259.19360 * 25 17 15 46 46 H 1.08004 * 120.03080 * 179.71960 * 26 13 12 47 47 H 1.08007 * 119.96298 * 180.25274 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6790 -4.1689 1.1989 12 6 3.5769 -5.2183 1.2022 13 6 4.0290 -5.7472 0.0005 14 7 4.9392 -6.8101 0.0004 15 6 4.8683 -7.7581 0.9558 16 8 4.0691 -7.6460 1.8653 17 7 5.6834 -8.8302 0.9032 18 6 6.7123 -9.1397 -0.1191 19 6 6.5936 -10.6632 -0.3395 20 6 5.9612 -11.2078 0.9581 21 6 4.6185 -11.8761 0.6556 22 8 4.0496 -12.3726 1.8689 23 6 6.9091 -12.1987 1.6366 24 8 6.3059 -12.6904 2.8351 25 6 5.7530 -9.9662 1.8515 26 6 3.5804 -5.2152 -1.2013 27 6 2.6785 -4.1692 -1.1979 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6243 -2.5567 0.8903 31 1 2.3266 -3.7574 2.1332 32 1 3.9271 -5.6272 2.1385 33 1 5.6212 -6.8646 -0.6872 34 1 7.7050 -8.8857 0.2524 35 1 6.5036 -8.6043 -1.0453 36 1 7.5795 -11.1017 -0.4936 37 1 5.9486 -10.8735 -1.1927 38 1 3.9422 -11.1472 0.2093 39 1 4.7722 -12.7021 -0.0388 40 1 3.1949 -12.8097 1.7525 41 1 7.1082 -13.0311 0.9618 42 1 7.8453 -11.6969 1.8809 43 1 6.8520 -13.3255 3.3184 44 1 4.8213 -10.0524 2.4105 45 1 6.5955 -9.8424 2.5319 46 1 3.9337 -5.6215 -2.1376 47 1 2.3261 -3.7578 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932562131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:05 Heat of formation + Delta-G solvation = -119.855703 kcal Electronic energy + Delta-G solvation = -28401.686832 eV Core-core repulsion = 24355.461675 eV Total energy + Delta-G solvation = -4046.225156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.86566 -40.50262 -39.33928 -37.21061 -36.87458 -36.28158 -34.99994 -33.50823 -31.99831 -31.76109 -30.31551 -28.65120 -26.94028 -26.67345 -24.97499 -24.06621 -23.74171 -22.14616 -21.01938 -20.22702 -19.49511 -18.51537 -18.41292 -17.93754 -17.80983 -17.26099 -16.89648 -16.44999 -16.27202 -16.16101 -15.92571 -15.47464 -15.12297 -14.64219 -14.53057 -14.36218 -14.32879 -14.26275 -13.92950 -13.68523 -13.32123 -13.27653 -13.20003 -13.04266 -12.61485 -12.55092 -12.46811 -12.24624 -12.08275 -12.05060 -11.69848 -11.54679 -11.43314 -11.26202 -10.90959 -10.80547 -10.66618 -10.59397 -9.87123 -9.76287 -8.84259 -8.17335 -6.32130 0.47663 0.57637 1.37454 1.40050 1.41750 1.53206 1.99080 2.40853 2.83274 3.00420 3.11570 3.13183 3.35817 3.52840 3.88445 4.04992 4.12390 4.16347 4.19779 4.27497 4.36456 4.38827 4.51977 4.53571 4.59597 4.61998 4.62527 4.67331 4.72493 4.81054 4.88799 4.91810 4.98004 5.13244 5.16123 5.26980 5.33523 5.36127 5.43738 5.49574 5.61682 5.76435 5.96898 6.08650 6.13304 6.26345 6.80444 6.83435 6.95009 7.10265 7.36065 7.41081 8.90632 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.002010 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.781372 B =13929.952550 C =14129.200486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.075 4.075 11 C -0.121 4.121 12 C -0.126 4.126 13 C 0.135 3.865 14 N -0.664 5.664 15 C 0.718 3.282 16 O -0.620 6.620 17 N -0.640 5.640 18 C 0.091 3.909 19 C -0.112 4.112 20 C -0.072 4.072 21 C 0.093 3.907 22 O -0.569 6.569 23 C 0.095 3.905 24 O -0.575 6.575 25 C 0.143 3.857 26 C -0.125 4.125 27 C -0.111 4.111 28 H 0.265 0.735 29 H 0.008 0.992 30 H -0.003 1.003 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.422 0.578 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.383 0.617 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.386 0.614 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.162 0.838 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.763 -29.865 -4.689 36.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.076 4.076 11 C -0.140 4.140 12 C -0.146 4.146 13 C 0.041 3.959 14 N -0.313 5.313 15 C 0.420 3.580 16 O -0.500 6.500 17 N -0.378 5.378 18 C -0.031 4.031 19 C -0.150 4.150 20 C -0.074 4.074 21 C 0.015 3.985 22 O -0.374 6.374 23 C 0.017 3.983 24 O -0.381 6.381 25 C 0.020 3.980 26 C -0.145 4.145 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.016 0.984 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.261 0.739 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.234 0.766 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.179 0.821 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.089 -29.001 -3.975 35.502 hybrid contribution -0.220 0.602 0.135 0.655 sum 19.869 -28.399 -3.840 34.871 Atomic orbital electron populations 1.70088 1.07708 1.27925 1.51403 1.25972 0.95809 1.03225 0.94660 0.85406 0.78465 0.78248 0.78687 1.19293 1.20644 1.19165 1.21380 0.93118 0.91124 1.50771 0.92606 1.18089 0.92861 0.91198 0.95807 1.20409 0.97744 0.95716 0.93704 1.20911 0.98621 0.96688 0.97767 1.21119 0.99425 0.95875 0.98172 1.17370 0.94855 0.89978 0.93685 1.42184 1.34826 1.22840 1.31459 1.15540 0.80593 0.79658 0.82181 1.90935 1.42308 1.79107 1.37678 1.48162 1.38532 1.20875 1.30198 1.22814 0.91651 0.96736 0.91875 1.22559 1.03677 0.93625 0.95187 1.21672 0.95553 0.93782 0.96347 1.22123 0.93179 0.96534 0.86667 1.86672 1.39969 1.78772 1.32029 1.22175 0.93541 0.95671 0.86929 1.86730 1.48241 1.64864 1.38258 1.22107 1.01583 0.82916 0.91352 1.20998 0.98410 0.98179 0.96948 1.20977 0.97877 0.96607 0.97520 0.92597 0.97341 0.98426 0.87457 0.86106 0.73919 0.88606 0.88374 0.86109 0.89229 0.95812 0.91619 0.76959 0.91502 0.92010 0.76571 0.93110 0.90877 0.82091 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.53 -30.89 9.09 25.60 0.23 -30.66 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.06 3.21 5.10 29.10 0.15 3.36 16 10 C -0.07 -3.52 5.07 -19.84 -0.10 -3.63 16 11 C -0.12 -5.46 9.69 22.25 0.22 -5.24 16 12 C -0.13 -5.07 8.70 22.39 0.19 -4.88 16 13 C 0.14 4.52 6.30 38.15 0.24 4.76 16 14 N -0.66 -16.79 5.31 -317.17 -1.68 -18.48 16 15 C 0.72 21.22 8.41 179.06 1.51 22.72 16 16 O -0.62 -25.16 14.04 -4.02 -0.06 -25.21 16 17 N -0.64 -13.04 3.32 -825.51 -2.74 -15.78 16 18 C 0.09 0.77 6.89 86.50 0.60 1.36 16 19 C -0.11 -0.59 6.30 31.50 0.20 -0.39 16 20 C -0.07 -0.89 0.73 -51.28 -0.04 -0.93 16 21 C 0.09 1.39 5.71 71.98 0.41 1.80 16 22 O -0.57 -10.92 10.98 -127.67 -1.40 -12.32 16 23 C 0.09 0.83 5.64 71.98 0.41 1.24 16 24 O -0.57 -8.15 11.35 -127.67 -1.45 -9.60 16 25 C 0.14 2.96 5.87 86.53 0.51 3.47 16 26 C -0.13 -3.88 9.97 22.39 0.22 -3.65 16 27 C -0.11 -4.33 9.69 22.25 0.22 -4.12 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.01 0.48 8.08 -2.39 -0.02 0.47 16 30 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 31 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.12 5.10 6.22 -2.91 -0.02 5.08 16 33 H 0.42 6.77 7.26 -92.71 -0.67 6.10 16 34 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.10 0.48 6.93 -2.39 -0.02 0.46 16 36 H 0.12 -0.10 7.71 -2.39 -0.02 -0.11 16 37 H 0.09 0.39 7.71 -2.38 -0.02 0.37 16 38 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.38 4.63 9.12 -74.06 -0.68 3.96 16 41 H 0.07 0.31 8.14 -2.39 -0.02 0.30 16 42 H 0.06 0.35 8.10 -2.39 -0.02 0.33 16 43 H 0.39 2.14 9.12 -74.06 -0.68 1.46 16 44 H 0.05 1.52 7.17 -2.39 -0.02 1.50 16 45 H 0.07 1.42 7.83 -2.39 -0.02 1.40 16 46 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -86.21 383.89 -0.61 -86.82 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -1.01 Total: 18.78 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.42 Total: -14.26 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -4.14 Total: -91.42 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -2.91 Total: -47.13 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -86.21 -0.61 -86.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.034 kcal (2) G-P(sol) polarization free energy of solvation -86.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds