Wall clock time and date at job start Tue Mar 31 2020 23:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48504 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47174 * 299.99694 * 3 2 1 6 6 H 1.48498 * 109.47242 * 60.00235 * 3 2 1 7 7 C 1.37883 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.38285 * 119.92690 * 89.99727 * 10 9 7 12 12 C 1.38111 * 120.07046 * 180.02562 * 11 10 9 13 13 C 1.38871 * 119.92929 * 359.97438 * 12 11 10 14 14 N 1.39941 * 120.07187 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99984 * 33.27177 * 14 13 12 16 16 O 1.21590 * 120.00180 * 5.31989 * 15 14 13 17 17 N 1.34776 * 120.00385 * 185.31702 * 15 14 13 18 18 C 1.46504 * 120.00503 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47275 * 179.97438 * 18 17 15 20 20 H 1.09005 * 109.47022 * 60.00025 * 19 18 17 21 21 O 1.42895 * 109.47240 * 300.00001 * 19 18 17 22 22 C 1.52993 * 109.46928 * 180.02562 * 19 18 17 23 23 H 1.09001 * 109.82460 * 295.56747 * 22 19 18 24 24 C 1.54384 * 109.82973 * 174.59160 * 22 19 18 25 25 C 1.55309 * 102.24852 * 219.12838 * 24 22 19 26 26 C 1.54938 * 100.94518 * 34.13160 * 25 24 22 27 27 O 1.43240 * 109.83375 * 56.45273 * 22 19 18 28 28 C 1.38871 * 119.85811 * 0.25905 * 13 12 11 29 29 C 1.38111 * 119.92645 * 359.48492 * 28 13 12 30 30 H 0.97006 * 120.00073 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47335 * 60.00047 * 9 7 2 32 32 H 1.08998 * 109.47275 * 299.99547 * 9 7 2 33 33 H 1.07999 * 119.96780 * 0.04484 * 11 10 9 34 34 H 1.07997 * 120.03913 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99975 * 213.00004 * 14 13 12 36 36 H 0.97010 * 119.99959 * 359.97438 * 17 15 14 37 37 H 1.08998 * 109.46900 * 299.99737 * 18 17 15 38 38 H 1.09005 * 109.47075 * 59.99848 * 18 17 15 39 39 H 0.96698 * 114.00288 * 300.00658 * 21 19 18 40 40 H 1.09003 * 110.84700 * 337.31473 * 24 22 19 41 41 H 1.08995 * 110.85115 * 100.93709 * 24 22 19 42 42 H 1.08997 * 111.12454 * 276.20425 * 25 24 22 43 43 H 1.09011 * 111.12260 * 152.05057 * 25 24 22 44 44 H 1.09001 * 110.31472 * 204.63743 * 26 25 24 45 45 H 1.09005 * 110.39915 * 82.51197 * 26 25 24 46 46 H 1.07995 * 120.03377 * 179.72604 * 28 13 12 47 47 H 1.08008 * 119.96229 * 180.25773 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6784 -4.1691 1.1990 12 6 3.5762 -5.2185 1.2025 13 6 4.0283 -5.7475 0.0007 14 7 4.9384 -6.8106 0.0007 15 6 4.8906 -7.7386 0.9769 16 8 3.9982 -7.7075 1.8021 17 7 5.8320 -8.7012 1.0384 18 6 5.7797 -9.7103 2.0992 19 6 6.9543 -10.6779 1.9410 20 1 7.8917 -10.1259 2.0104 21 8 6.8735 -11.3210 0.6674 22 6 6.8993 -11.7320 3.0484 23 1 7.0391 -11.2562 4.0190 24 6 7.9993 -12.7907 2.8188 25 6 7.2768 -14.1075 3.2140 26 6 5.8323 -13.8031 2.7437 27 8 5.6359 -12.4063 3.0153 28 6 3.5799 -5.2155 -1.2011 29 6 2.6780 -4.1695 -1.1977 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6239 -2.5567 0.8903 33 1 2.3259 -3.7577 2.1333 34 1 3.9263 -5.6274 2.1387 35 1 5.6012 -6.8817 -0.7041 36 1 6.5438 -8.7263 0.3797 37 1 5.8410 -9.2197 3.0706 38 1 4.8425 -10.2625 2.0294 39 1 6.0631 -11.8318 0.5355 40 1 8.3030 -12.8139 1.7722 41 1 8.8553 -12.6079 3.4683 42 1 7.3138 -14.2678 4.2915 43 1 7.6932 -14.9602 2.6774 44 1 5.1168 -14.4022 3.3070 45 1 5.7310 -13.9988 1.6762 46 1 3.9330 -5.6218 -2.1373 47 1 2.3257 -3.7580 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932562343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:45 Heat of formation + Delta-G solvation = -107.303803 kcal Electronic energy + Delta-G solvation = -27604.283228 eV Core-core repulsion = 23558.602363 eV Total energy + Delta-G solvation = -4045.680865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.91 seconds Orbital eigenvalues (eV) -40.70014 -40.20085 -38.35500 -37.23045 -34.87190 -34.42474 -32.94994 -32.68485 -31.38680 -30.31437 -30.17951 -27.96280 -26.34637 -24.08066 -23.05742 -22.31034 -22.11706 -21.63703 -20.97303 -20.07552 -18.47114 -17.84252 -17.61149 -17.04815 -16.25640 -16.14083 -15.95409 -15.36858 -15.14441 -14.94110 -14.81226 -14.27806 -14.24829 -14.10659 -13.84311 -13.56383 -12.97442 -12.85346 -12.72435 -12.49224 -12.43086 -12.18380 -12.06436 -11.94222 -11.69907 -11.36620 -11.32317 -11.22993 -10.79293 -10.76670 -10.56427 -10.35030 -10.12789 -9.91333 -9.82531 -9.41210 -9.26932 -9.15153 -8.38216 -8.20581 -7.26942 -5.99120 -4.02901 2.02562 2.14957 2.56835 3.20465 3.24847 3.32332 3.39826 3.45019 3.75925 3.88442 4.08312 4.22011 4.31623 4.43405 4.44873 4.55755 4.64010 4.66697 4.73395 4.96592 5.13883 5.21757 5.24505 5.30995 5.34827 5.40826 5.49668 5.56371 5.64821 5.69766 6.01574 6.12045 6.16426 6.26981 6.28701 6.41431 6.63398 6.74130 7.01982 7.04492 7.13143 7.24710 7.29074 7.58224 7.80118 7.93308 7.95374 7.97032 8.38213 8.57583 9.02835 9.60574 11.10427 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.001686 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.832638 B =16602.587009 C =16658.841698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.046 4.046 11 C -0.107 4.107 12 C -0.118 4.118 13 C 0.125 3.875 14 N -0.682 5.682 15 C 0.700 3.300 16 O -0.572 6.572 17 N -0.742 5.742 18 C 0.112 3.888 19 C 0.088 3.912 20 H 0.114 0.886 21 O -0.555 6.555 22 C 0.050 3.950 23 H 0.092 0.908 24 C -0.149 4.149 25 C -0.156 4.156 26 C 0.048 3.952 27 O -0.374 6.374 28 C -0.147 4.147 29 C -0.107 4.107 30 H 0.261 0.739 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.401 0.599 36 H 0.398 0.602 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.380 0.620 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.113 0.887 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.402 -29.385 3.163 34.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.047 4.047 11 C -0.125 4.125 12 C -0.138 4.138 13 C 0.032 3.968 14 N -0.329 5.329 15 C 0.401 3.599 16 O -0.448 6.448 17 N -0.399 5.399 18 C -0.013 4.013 19 C 0.028 3.972 20 H 0.132 0.868 21 O -0.361 6.361 22 C -0.008 4.008 23 H 0.109 0.891 24 C -0.187 4.187 25 C -0.194 4.194 26 C -0.028 4.028 27 O -0.293 6.293 28 C -0.167 4.167 29 C -0.126 4.126 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.235 0.765 36 H 0.232 0.768 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.228 0.772 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.841 -28.902 3.922 34.191 hybrid contribution 0.807 0.510 -0.554 1.104 sum 18.648 -28.392 3.367 34.135 Atomic orbital electron populations 1.69971 1.06020 1.26615 1.50742 1.25018 0.94872 0.99223 0.95303 0.86491 0.80136 0.83582 0.77565 1.19701 1.20998 1.20993 1.21126 0.93103 0.89910 1.50624 0.92401 1.18348 0.92595 0.89604 0.98379 1.20687 0.96661 0.95436 0.91878 1.20986 0.97462 0.95610 0.98485 1.21001 0.99556 0.96437 0.96785 1.17293 0.95302 0.89868 0.94361 1.42472 1.36357 1.25418 1.28617 1.15925 0.82351 0.79347 0.82309 1.90970 1.36134 1.75838 1.41839 1.44963 1.30507 1.30633 1.33824 1.21783 0.99506 0.89085 0.90945 1.22573 0.99052 0.91826 0.83742 0.86846 1.86519 1.45980 1.69280 1.34283 1.23436 0.84260 0.93991 0.99128 0.89063 1.23126 0.98113 0.93545 1.03902 1.23256 0.95523 0.98281 1.02305 1.23442 0.96634 0.82427 1.00338 1.88497 1.27843 1.20357 1.92617 1.20697 1.00517 1.00093 0.95424 1.20853 0.97334 0.95887 0.98499 0.92956 0.95338 0.95302 0.86153 0.85799 0.76484 0.76757 0.90710 0.90306 0.77190 0.89028 0.89927 0.90361 0.89788 0.89550 0.91953 0.86900 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.51 9.09 -34.44 -0.31 -14.82 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 10 C -0.05 -1.04 5.07 -104.59 -0.53 -1.57 16 11 C -0.11 -2.27 9.69 -39.61 -0.38 -2.66 16 12 C -0.12 -2.29 8.66 -39.39 -0.34 -2.64 16 13 C 0.12 2.16 6.28 -83.69 -0.53 1.64 16 14 N -0.68 -9.17 5.35 -14.22 -0.08 -9.25 16 15 C 0.70 10.01 8.30 -86.92 -0.72 9.29 16 16 O -0.57 -10.72 14.03 5.29 0.07 -10.65 16 17 N -0.74 -7.24 5.45 -65.22 -0.36 -7.60 16 18 C 0.11 0.99 5.16 -4.04 -0.02 0.97 16 19 C 0.09 0.51 2.98 -26.73 -0.08 0.43 16 20 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 21 O -0.55 -3.41 11.97 -40.76 -0.49 -3.90 16 22 C 0.05 0.28 3.42 -26.01 -0.09 0.19 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 C -0.15 -0.60 6.43 -24.78 -0.16 -0.76 16 25 C -0.16 -0.57 7.15 -24.48 -0.18 -0.74 16 26 C 0.05 0.23 7.78 38.18 0.30 0.53 16 27 O -0.37 -2.73 9.85 -40.76 -0.40 -3.13 16 28 C -0.15 -2.50 9.96 -39.39 -0.39 -2.89 16 29 C -0.11 -2.14 9.69 -39.62 -0.38 -2.52 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 34 H 0.12 2.42 6.41 -52.49 -0.34 2.09 16 35 H 0.40 3.87 8.83 -40.82 -0.36 3.51 16 36 H 0.40 2.88 8.37 -40.82 -0.34 2.54 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.85 7.61 -51.93 -0.40 0.45 16 39 H 0.38 1.93 8.69 45.56 0.40 2.33 16 40 H 0.09 0.41 7.03 -51.93 -0.37 0.05 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 44 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 47 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -34.91 389.49 -10.16 -45.07 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.43 Total: 5.77 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -4.06 Total: -12.91 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.30 Total: -42.91 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.82 Total: -17.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.91 -10.16 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.233 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.91 seconds