Wall clock time and date at job start Tue Mar 31 2020 23:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48504 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47174 * 299.99694 * 3 2 1 6 6 H 1.48498 * 109.47242 * 60.00235 * 3 2 1 7 7 C 1.37883 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.38285 * 119.92690 * 89.99727 * 10 9 7 12 12 C 1.38111 * 120.07046 * 180.02562 * 11 10 9 13 13 C 1.38871 * 119.92929 * 359.97438 * 12 11 10 14 14 N 1.39941 * 120.07187 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99984 * 33.27177 * 14 13 12 16 16 O 1.21590 * 120.00180 * 5.31989 * 15 14 13 17 17 N 1.34776 * 120.00385 * 185.31702 * 15 14 13 18 18 C 1.46504 * 120.00503 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47275 * 179.97438 * 18 17 15 20 20 H 1.09005 * 109.47022 * 60.00025 * 19 18 17 21 21 O 1.42895 * 109.47240 * 300.00001 * 19 18 17 22 22 C 1.52993 * 109.46928 * 180.02562 * 19 18 17 23 23 H 1.09001 * 109.82460 * 295.56747 * 22 19 18 24 24 C 1.54384 * 109.82973 * 174.59160 * 22 19 18 25 25 C 1.55309 * 102.24852 * 219.12838 * 24 22 19 26 26 C 1.54938 * 100.94518 * 34.13160 * 25 24 22 27 27 O 1.43240 * 109.83375 * 56.45273 * 22 19 18 28 28 C 1.38871 * 119.85811 * 0.25905 * 13 12 11 29 29 C 1.38111 * 119.92645 * 359.48492 * 28 13 12 30 30 H 0.97006 * 120.00073 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47335 * 60.00047 * 9 7 2 32 32 H 1.08998 * 109.47275 * 299.99547 * 9 7 2 33 33 H 1.07999 * 119.96780 * 0.04484 * 11 10 9 34 34 H 1.07997 * 120.03913 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99975 * 213.00004 * 14 13 12 36 36 H 0.97010 * 119.99959 * 359.97438 * 17 15 14 37 37 H 1.08998 * 109.46900 * 299.99737 * 18 17 15 38 38 H 1.09005 * 109.47075 * 59.99848 * 18 17 15 39 39 H 0.96698 * 114.00288 * 300.00658 * 21 19 18 40 40 H 1.09003 * 110.84700 * 337.31473 * 24 22 19 41 41 H 1.08995 * 110.85115 * 100.93709 * 24 22 19 42 42 H 1.08997 * 111.12454 * 276.20425 * 25 24 22 43 43 H 1.09011 * 111.12260 * 152.05057 * 25 24 22 44 44 H 1.09001 * 110.31472 * 204.63743 * 26 25 24 45 45 H 1.09005 * 110.39915 * 82.51197 * 26 25 24 46 46 H 1.07995 * 120.03377 * 179.72604 * 28 13 12 47 47 H 1.08008 * 119.96229 * 180.25773 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6784 -4.1691 1.1990 12 6 3.5762 -5.2185 1.2025 13 6 4.0283 -5.7475 0.0007 14 7 4.9384 -6.8106 0.0007 15 6 4.8906 -7.7386 0.9769 16 8 3.9982 -7.7075 1.8021 17 7 5.8320 -8.7012 1.0384 18 6 5.7797 -9.7103 2.0992 19 6 6.9543 -10.6779 1.9410 20 1 7.8917 -10.1259 2.0104 21 8 6.8735 -11.3210 0.6674 22 6 6.8993 -11.7320 3.0484 23 1 7.0391 -11.2562 4.0190 24 6 7.9993 -12.7907 2.8188 25 6 7.2768 -14.1075 3.2140 26 6 5.8323 -13.8031 2.7437 27 8 5.6359 -12.4063 3.0153 28 6 3.5799 -5.2155 -1.2011 29 6 2.6780 -4.1695 -1.1977 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6239 -2.5567 0.8903 33 1 2.3259 -3.7577 2.1333 34 1 3.9263 -5.6274 2.1387 35 1 5.6012 -6.8817 -0.7041 36 1 6.5438 -8.7263 0.3797 37 1 5.8410 -9.2197 3.0706 38 1 4.8425 -10.2625 2.0294 39 1 6.0631 -11.8318 0.5355 40 1 8.3030 -12.8139 1.7722 41 1 8.8553 -12.6079 3.4683 42 1 7.3138 -14.2678 4.2915 43 1 7.6932 -14.9602 2.6774 44 1 5.1168 -14.4022 3.3070 45 1 5.7310 -13.9988 1.6762 46 1 3.9330 -5.6218 -2.1373 47 1 2.3257 -3.7580 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932562343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:15 Heat of formation + Delta-G solvation = -133.015227 kcal Electronic energy + Delta-G solvation = -27605.398159 eV Core-core repulsion = 23558.602363 eV Total energy + Delta-G solvation = -4046.795796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.23 seconds Orbital eigenvalues (eV) -41.70087 -40.87320 -39.74515 -37.85422 -36.28353 -35.41133 -34.91172 -33.05165 -32.37790 -31.75946 -31.56806 -28.93636 -27.85303 -25.28905 -24.33053 -23.78704 -22.65495 -22.25885 -22.06477 -21.48472 -19.55382 -18.74958 -18.48594 -18.13097 -17.83569 -16.92465 -16.76955 -16.54922 -16.26717 -15.95909 -15.87891 -15.78510 -15.33930 -14.89616 -14.63377 -14.57326 -14.49552 -14.25894 -14.02132 -13.71676 -13.45900 -13.25015 -13.11072 -12.80384 -12.62309 -12.59094 -12.46749 -12.44125 -12.06259 -12.03081 -11.68957 -11.65212 -11.54994 -11.33603 -11.21817 -10.92147 -10.59569 -10.35171 -10.18542 -9.74794 -8.80835 -8.16629 -6.31624 0.50273 0.59203 1.40493 1.41112 1.53607 1.54883 2.05389 2.41558 2.82900 3.03771 3.09079 3.12255 3.39657 3.59705 3.65454 3.94437 4.01616 4.06901 4.11205 4.17091 4.24815 4.37320 4.40205 4.51927 4.60009 4.67250 4.69896 4.77366 4.82667 4.90142 4.95838 4.97189 5.08494 5.13554 5.30896 5.32775 5.34991 5.36375 5.43396 5.51490 5.63993 5.77491 5.96058 6.03608 6.10496 6.14668 6.27949 6.60874 6.81323 6.98913 7.36775 7.47817 8.91311 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.001686 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.832638 B =16602.587009 C =16658.841698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.078 4.078 11 C -0.119 4.119 12 C -0.125 4.125 13 C 0.140 3.860 14 N -0.667 5.667 15 C 0.696 3.304 16 O -0.619 6.619 17 N -0.719 5.719 18 C 0.112 3.888 19 C 0.102 3.898 20 H 0.132 0.868 21 O -0.557 6.557 22 C 0.047 3.953 23 H 0.092 0.908 24 C -0.143 4.143 25 C -0.152 4.152 26 C 0.040 3.960 27 O -0.399 6.399 28 C -0.130 4.130 29 C -0.111 4.111 30 H 0.265 0.735 31 H 0.007 0.993 32 H -0.002 1.002 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.424 0.576 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.384 0.616 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.159 0.841 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.677 -30.746 1.906 37.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.079 4.079 11 C -0.138 4.138 12 C -0.145 4.145 13 C 0.045 3.955 14 N -0.316 5.316 15 C 0.397 3.603 16 O -0.499 6.499 17 N -0.376 5.376 18 C -0.012 4.012 19 C 0.042 3.958 20 H 0.149 0.851 21 O -0.363 6.363 22 C -0.012 4.012 23 H 0.110 0.890 24 C -0.180 4.180 25 C -0.189 4.189 26 C -0.036 4.036 27 O -0.320 6.320 28 C -0.150 4.150 29 C -0.130 4.130 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.017 0.983 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.262 0.738 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.177 0.823 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.185 -30.314 2.628 37.076 hybrid contribution -0.198 0.771 -0.145 0.809 sum 20.987 -29.543 2.484 36.324 Atomic orbital electron populations 1.70097 1.07724 1.27844 1.51468 1.25956 0.95779 1.03181 0.94624 0.85356 0.78927 0.78605 0.77908 1.18840 1.19972 1.20393 1.21431 0.93160 0.91166 1.50709 0.92577 1.18091 0.92883 0.91222 0.95807 1.20397 0.97910 0.95830 0.93749 1.20901 0.98507 0.96651 0.97723 1.20989 0.99571 0.96084 0.97897 1.17355 0.94660 0.89847 0.93649 1.42253 1.36052 1.24083 1.29225 1.16142 0.82499 0.79948 0.81752 1.90954 1.38271 1.77064 1.43592 1.44790 1.29485 1.29251 1.34026 1.21853 1.00192 0.89016 0.90174 1.22514 0.98133 0.91220 0.83933 0.85089 1.86510 1.46312 1.69266 1.34258 1.23526 0.84354 0.94263 0.99016 0.88974 1.23097 0.97865 0.92988 1.04096 1.23252 0.94585 0.98618 1.02487 1.23597 0.97587 0.81455 1.00946 1.88477 1.29059 1.21637 1.92778 1.20993 0.98614 0.98337 0.97078 1.20965 0.97857 0.96618 0.97519 0.92613 0.97446 0.98328 0.87288 0.86098 0.73756 0.74757 0.91660 0.92322 0.76677 0.89119 0.88737 0.90342 0.88479 0.89530 0.91172 0.82301 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.53 -30.91 9.09 25.60 0.23 -30.68 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.06 3.18 5.10 29.10 0.15 3.33 16 10 C -0.08 -3.66 5.07 -19.84 -0.10 -3.76 16 11 C -0.12 -5.27 9.69 22.25 0.22 -5.06 16 12 C -0.12 -4.89 8.66 22.39 0.19 -4.69 16 13 C 0.14 4.56 6.28 38.15 0.24 4.80 16 14 N -0.67 -15.99 5.35 -317.18 -1.70 -17.69 16 15 C 0.70 18.69 8.30 179.06 1.49 20.17 16 16 O -0.62 -23.07 14.03 -4.00 -0.06 -23.12 16 17 N -0.72 -12.41 5.45 -478.52 -2.61 -15.02 16 18 C 0.11 1.86 5.16 86.38 0.45 2.31 16 19 C 0.10 0.97 2.98 30.59 0.09 1.06 16 20 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 21 O -0.56 -5.46 11.97 -143.69 -1.72 -7.18 16 22 C 0.05 0.44 3.42 31.06 0.11 0.55 16 23 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 24 C -0.14 -0.83 6.43 31.86 0.20 -0.62 16 25 C -0.15 -0.82 7.15 32.05 0.23 -0.60 16 26 C 0.04 0.34 7.78 72.64 0.56 0.91 16 27 O -0.40 -5.55 9.85 -143.69 -1.42 -6.96 16 28 C -0.13 -4.06 9.96 22.39 0.22 -3.84 16 29 C -0.11 -4.36 9.69 22.25 0.22 -4.14 16 30 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 31 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 32 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 33 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 34 H 0.12 4.80 6.41 -2.91 -0.02 4.78 16 35 H 0.42 6.35 8.83 -92.71 -0.82 5.53 16 36 H 0.42 4.56 8.37 -92.70 -0.78 3.78 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.25 7.61 -2.38 -0.02 1.23 16 39 H 0.38 3.17 8.69 -74.06 -0.64 2.53 16 40 H 0.09 0.57 7.03 -2.39 -0.02 0.55 16 41 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 46 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 47 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -78.34 389.49 -1.46 -79.80 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -1.23 Total: 19.76 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.96 Total: -19.65 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -4.02 Total: -89.76 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -3.19 Total: -37.27 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -78.34 -1.46 -79.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.217 kcal (2) G-P(sol) polarization free energy of solvation -78.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.24 seconds