Wall clock time and date at job start Tue Mar 31 2020 23:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99733 * 2 1 4 4 H 1.48498 * 109.47228 * 269.99722 * 3 2 1 5 5 H 1.48498 * 109.47117 * 29.99944 * 3 2 1 6 6 H 1.48504 * 109.46651 * 149.99950 * 3 2 1 7 7 C 1.37872 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46842 * 179.97438 * 9 7 2 11 11 C 1.38286 * 119.92785 * 90.00431 * 10 9 7 12 12 C 1.38109 * 120.07004 * 180.02562 * 11 10 9 13 13 C 1.38867 * 119.93320 * 0.02562 * 12 11 10 14 14 N 1.39941 * 120.07247 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99809 * 35.08594 * 14 13 12 16 16 O 1.21583 * 120.00110 * 355.37739 * 15 14 13 17 17 N 1.34782 * 119.99668 * 175.38308 * 15 14 13 18 18 C 1.46502 * 119.99769 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.46921 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47563 * 59.99609 * 19 18 17 21 21 O 1.42908 * 109.46913 * 299.99755 * 19 18 17 22 22 C 1.53004 * 109.47219 * 180.02562 * 19 18 17 23 23 H 1.08996 * 109.86592 * 59.29420 * 22 19 18 24 24 C 1.54096 * 109.87915 * 180.30251 * 22 19 18 25 25 C 1.54812 * 104.18398 * 121.60221 * 24 22 19 26 26 C 1.54990 * 102.09452 * 20.88222 * 25 24 22 27 27 O 1.43742 * 109.99838 * 298.21103 * 22 19 18 28 28 C 1.38862 * 119.85661 * 0.24918 * 13 12 11 29 29 C 1.38113 * 119.93085 * 359.49148 * 28 13 12 30 30 H 0.97003 * 120.00160 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47411 * 60.00355 * 9 7 2 32 32 H 1.08995 * 109.47429 * 300.00042 * 9 7 2 33 33 H 1.07999 * 119.96229 * 0.04085 * 11 10 9 34 34 H 1.08009 * 120.03535 * 179.97438 * 12 11 10 35 35 H 0.96997 * 120.00234 * 215.09423 * 14 13 12 36 36 H 0.97000 * 119.99822 * 359.97438 * 17 15 14 37 37 H 1.09002 * 109.46872 * 59.99669 * 18 17 15 38 38 H 1.09000 * 109.47035 * 299.99886 * 18 17 15 39 39 H 0.96698 * 113.99908 * 299.99885 * 21 19 18 40 40 H 1.08993 * 110.48833 * 240.27660 * 24 22 19 41 41 H 1.08996 * 110.48745 * 2.79533 * 24 22 19 42 42 H 1.09005 * 110.90297 * 139.07937 * 25 24 22 43 43 H 1.09000 * 110.90876 * 262.67672 * 25 24 22 44 44 H 1.08994 * 110.62017 * 81.47731 * 26 25 24 45 45 H 1.09004 * 110.61965 * 204.47860 * 26 25 24 46 46 H 1.08000 * 120.03608 * 179.72709 * 28 13 12 47 47 H 1.08001 * 119.96902 * 180.24944 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6786 -4.1690 1.1990 12 6 3.5766 -5.2183 1.2024 13 6 4.0297 -5.7465 0.0007 14 7 4.9399 -6.8094 0.0008 15 6 4.8682 -7.7580 0.9556 16 8 4.0681 -7.6466 1.8643 17 7 5.6836 -8.8299 0.9032 18 6 5.6053 -9.8612 1.9407 19 6 6.6297 -10.9589 1.6470 20 1 7.6310 -10.5284 1.6374 21 8 6.3500 -11.5428 0.3729 22 6 6.5475 -12.0364 2.7302 23 1 5.5446 -12.4627 2.7532 24 6 7.5812 -13.1436 2.4474 25 6 8.4672 -13.1686 3.7167 26 6 7.5482 -12.4952 4.7675 27 8 6.8675 -11.4702 4.0120 28 6 3.5820 -5.2139 -1.2010 29 6 2.6800 -4.1680 -1.1978 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8902 33 1 2.3260 -3.7576 2.1333 34 1 3.9266 -5.6272 2.1388 35 1 5.6225 -6.8635 -0.6862 36 1 6.3217 -8.9188 0.1781 37 1 4.6040 -10.2920 1.9499 38 1 5.8181 -9.4158 2.9126 39 1 5.4735 -11.9460 0.3089 40 1 7.0840 -14.1038 2.3103 41 1 8.1765 -12.8944 1.5690 42 1 8.7035 -14.1927 4.0059 43 1 9.3776 -12.5882 3.5671 44 1 6.8340 -13.2137 5.1696 45 1 8.1407 -12.0523 5.5680 46 1 3.9359 -5.6195 -2.1373 47 1 2.3283 -3.7560 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932562345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:58 Heat of formation + Delta-G solvation = -105.714374 kcal Electronic energy + Delta-G solvation = -27488.132505 eV Core-core repulsion = 23442.520562 eV Total energy + Delta-G solvation = -4045.611942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.93 seconds Orbital eigenvalues (eV) -40.62417 -40.12769 -38.39494 -37.53809 -34.88767 -34.45899 -32.94753 -32.59183 -31.26630 -30.29924 -30.16077 -27.93792 -26.32899 -24.00566 -23.06693 -22.35319 -22.22003 -21.77674 -20.96450 -20.10806 -18.50590 -17.70829 -17.29109 -17.02964 -16.52709 -16.25150 -15.77356 -15.53581 -15.22124 -14.80337 -14.63604 -14.44738 -14.17535 -14.16243 -13.93459 -13.76892 -12.97227 -12.86259 -12.70688 -12.48087 -12.34624 -12.18403 -11.98212 -11.89347 -11.74468 -11.33395 -11.25948 -11.22204 -10.78839 -10.71968 -10.58655 -10.34741 -10.19075 -10.05227 -9.80649 -9.39149 -9.28499 -9.15709 -8.37458 -8.19638 -7.28757 -5.98745 -4.02585 2.02786 2.16057 2.56126 3.13406 3.23565 3.33731 3.39865 3.44540 3.83187 3.94948 4.01144 4.21933 4.32708 4.41086 4.43707 4.54479 4.62276 4.65276 4.78211 4.90820 5.14428 5.17370 5.24810 5.35152 5.40898 5.47907 5.51415 5.52498 5.58354 5.67643 6.02304 6.13750 6.16099 6.27160 6.28736 6.29954 6.63986 6.75661 6.98739 7.03096 7.13169 7.24972 7.30148 7.58171 7.80725 7.93260 7.95678 7.97253 8.38385 8.57317 9.02843 9.60868 11.10769 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.001707 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.575300 B =16394.407173 C =16761.804813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.045 4.045 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.121 3.879 14 N -0.681 5.681 15 C 0.701 3.299 16 O -0.573 6.573 17 N -0.742 5.742 18 C 0.111 3.889 19 C 0.100 3.900 20 H 0.113 0.887 21 O -0.550 6.550 22 C 0.049 3.951 23 H 0.074 0.926 24 C -0.147 4.147 25 C -0.157 4.157 26 C 0.045 3.955 27 O -0.366 6.366 28 C -0.145 4.145 29 C -0.109 4.109 30 H 0.261 0.739 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.401 0.599 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.380 0.620 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.576 -29.855 3.116 34.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.045 4.045 11 C -0.128 4.128 12 C -0.137 4.137 13 C 0.028 3.972 14 N -0.328 5.328 15 C 0.401 3.599 16 O -0.449 6.449 17 N -0.399 5.399 18 C -0.013 4.013 19 C 0.040 3.960 20 H 0.130 0.870 21 O -0.356 6.356 22 C -0.010 4.010 23 H 0.091 0.909 24 C -0.184 4.184 25 C -0.195 4.195 26 C -0.031 4.031 27 O -0.285 6.285 28 C -0.166 4.166 29 C -0.128 4.128 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.235 0.765 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.228 0.772 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.131 0.869 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.242 -29.268 3.921 34.194 hybrid contribution 0.594 0.392 -0.587 0.923 sum 17.836 -28.875 3.334 34.103 Atomic orbital electron populations 1.69963 1.06015 1.26725 1.50666 1.25015 0.94875 0.99214 0.95287 0.86543 0.79855 0.83238 0.78102 1.20649 1.21205 1.19827 1.21084 0.93071 0.89916 1.50746 0.92453 1.18346 0.92593 0.89604 0.98362 1.20703 0.96568 0.95359 0.91904 1.21014 0.97606 0.95680 0.98461 1.21158 0.99247 0.96113 0.97142 1.17302 0.95465 0.90136 0.94320 1.42429 1.34930 1.24261 1.31195 1.15926 0.81476 0.79682 0.82783 1.90949 1.40095 1.78449 1.35387 1.44941 1.42007 1.22522 1.30434 1.21825 0.99348 0.88192 0.91972 1.22224 1.00023 0.91024 0.82754 0.86958 1.86624 1.39726 1.77414 1.31824 1.23394 0.99058 0.93714 0.84819 0.90853 1.22921 0.97426 0.98791 0.99291 1.23167 0.99280 1.01990 0.95046 1.23607 0.94159 0.90509 0.94853 1.88925 1.77815 1.36540 1.25193 1.20716 1.00411 1.00000 0.95451 1.20851 0.97450 0.95965 0.98490 0.92906 0.95359 0.95302 0.86163 0.85261 0.76474 0.76714 0.91338 0.89718 0.77224 0.90470 0.89501 0.90067 0.90330 0.91943 0.88638 0.86921 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.55 9.09 -34.44 -0.31 -14.86 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.05 1.26 5.10 -29.03 -0.15 1.12 16 10 C -0.04 -1.01 5.07 -104.59 -0.53 -1.54 16 11 C -0.11 -2.32 9.69 -39.61 -0.38 -2.71 16 12 C -0.12 -2.28 8.69 -39.40 -0.34 -2.63 16 13 C 0.12 2.09 6.30 -83.69 -0.53 1.56 16 14 N -0.68 -9.14 5.34 -14.22 -0.08 -9.22 16 15 C 0.70 9.99 8.41 -86.91 -0.73 9.25 16 16 O -0.57 -10.65 13.78 5.29 0.07 -10.57 16 17 N -0.74 -7.24 5.45 -65.22 -0.36 -7.59 16 18 C 0.11 0.99 5.21 -4.04 -0.02 0.97 16 19 C 0.10 0.60 2.66 -26.73 -0.07 0.53 16 20 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 21 O -0.55 -2.99 12.58 -35.23 -0.44 -3.44 16 22 C 0.05 0.28 3.16 -26.16 -0.08 0.20 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 24 C -0.15 -0.64 6.39 -25.20 -0.16 -0.80 16 25 C -0.16 -0.63 7.15 -24.73 -0.18 -0.81 16 26 C 0.05 0.23 7.72 38.21 0.29 0.53 16 27 O -0.37 -2.89 10.63 -35.23 -0.37 -3.27 16 28 C -0.15 -2.46 9.97 -39.40 -0.39 -2.86 16 29 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 34 H 0.13 2.57 6.22 -52.48 -0.33 2.24 16 35 H 0.40 3.86 8.84 -40.82 -0.36 3.50 16 36 H 0.40 2.89 8.37 -40.82 -0.34 2.54 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.92 7.76 -51.93 -0.40 0.52 16 39 H 0.38 1.09 9.04 45.56 0.41 1.50 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.41 7.51 -51.93 -0.39 0.02 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -35.17 390.96 -10.08 -45.25 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.44 Total: 5.23 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -4.07 Total: -13.04 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.30 Total: -42.89 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.74 Total: -17.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.17 -10.08 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.463 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.93 seconds