Wall clock time and date at job start Tue Mar 31 2020 23:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99733 * 2 1 4 4 H 1.48498 * 109.47228 * 269.99722 * 3 2 1 5 5 H 1.48498 * 109.47117 * 29.99944 * 3 2 1 6 6 H 1.48504 * 109.46651 * 149.99950 * 3 2 1 7 7 C 1.37872 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46842 * 179.97438 * 9 7 2 11 11 C 1.38286 * 119.92785 * 90.00431 * 10 9 7 12 12 C 1.38109 * 120.07004 * 180.02562 * 11 10 9 13 13 C 1.38867 * 119.93320 * 0.02562 * 12 11 10 14 14 N 1.39941 * 120.07247 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99809 * 35.08594 * 14 13 12 16 16 O 1.21583 * 120.00110 * 355.37739 * 15 14 13 17 17 N 1.34782 * 119.99668 * 175.38308 * 15 14 13 18 18 C 1.46502 * 119.99769 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.46921 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47563 * 59.99609 * 19 18 17 21 21 O 1.42908 * 109.46913 * 299.99755 * 19 18 17 22 22 C 1.53004 * 109.47219 * 180.02562 * 19 18 17 23 23 H 1.08996 * 109.86592 * 59.29420 * 22 19 18 24 24 C 1.54096 * 109.87915 * 180.30251 * 22 19 18 25 25 C 1.54812 * 104.18398 * 121.60221 * 24 22 19 26 26 C 1.54990 * 102.09452 * 20.88222 * 25 24 22 27 27 O 1.43742 * 109.99838 * 298.21103 * 22 19 18 28 28 C 1.38862 * 119.85661 * 0.24918 * 13 12 11 29 29 C 1.38113 * 119.93085 * 359.49148 * 28 13 12 30 30 H 0.97003 * 120.00160 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47411 * 60.00355 * 9 7 2 32 32 H 1.08995 * 109.47429 * 300.00042 * 9 7 2 33 33 H 1.07999 * 119.96229 * 0.04085 * 11 10 9 34 34 H 1.08009 * 120.03535 * 179.97438 * 12 11 10 35 35 H 0.96997 * 120.00234 * 215.09423 * 14 13 12 36 36 H 0.97000 * 119.99822 * 359.97438 * 17 15 14 37 37 H 1.09002 * 109.46872 * 59.99669 * 18 17 15 38 38 H 1.09000 * 109.47035 * 299.99886 * 18 17 15 39 39 H 0.96698 * 113.99908 * 299.99885 * 21 19 18 40 40 H 1.08993 * 110.48833 * 240.27660 * 24 22 19 41 41 H 1.08996 * 110.48745 * 2.79533 * 24 22 19 42 42 H 1.09005 * 110.90297 * 139.07937 * 25 24 22 43 43 H 1.09000 * 110.90876 * 262.67672 * 25 24 22 44 44 H 1.08994 * 110.62017 * 81.47731 * 26 25 24 45 45 H 1.09004 * 110.61965 * 204.47860 * 26 25 24 46 46 H 1.08000 * 120.03608 * 179.72709 * 28 13 12 47 47 H 1.08001 * 119.96902 * 180.24944 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6786 -4.1690 1.1990 12 6 3.5766 -5.2183 1.2024 13 6 4.0297 -5.7465 0.0007 14 7 4.9399 -6.8094 0.0008 15 6 4.8682 -7.7580 0.9556 16 8 4.0681 -7.6466 1.8643 17 7 5.6836 -8.8299 0.9032 18 6 5.6053 -9.8612 1.9407 19 6 6.6297 -10.9589 1.6470 20 1 7.6310 -10.5284 1.6374 21 8 6.3500 -11.5428 0.3729 22 6 6.5475 -12.0364 2.7302 23 1 5.5446 -12.4627 2.7532 24 6 7.5812 -13.1436 2.4474 25 6 8.4672 -13.1686 3.7167 26 6 7.5482 -12.4952 4.7675 27 8 6.8675 -11.4702 4.0120 28 6 3.5820 -5.2139 -1.2010 29 6 2.6800 -4.1680 -1.1978 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8902 33 1 2.3260 -3.7576 2.1333 34 1 3.9266 -5.6272 2.1388 35 1 5.6225 -6.8635 -0.6862 36 1 6.3217 -8.9188 0.1781 37 1 4.6040 -10.2920 1.9499 38 1 5.8181 -9.4158 2.9126 39 1 5.4735 -11.9460 0.3089 40 1 7.0840 -14.1038 2.3103 41 1 8.1765 -12.8944 1.5690 42 1 8.7035 -14.1927 4.0059 43 1 9.3776 -12.5882 3.5671 44 1 6.8340 -13.2137 5.1696 45 1 8.1407 -12.0523 5.5680 46 1 3.9359 -5.6195 -2.1373 47 1 2.3283 -3.7560 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932562345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:57 Heat of formation + Delta-G solvation = -132.120024 kcal Electronic energy + Delta-G solvation = -27489.277540 eV Core-core repulsion = 23442.520562 eV Total energy + Delta-G solvation = -4046.756977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69344 -40.74750 -39.74908 -38.17191 -36.29124 -35.45788 -34.91354 -32.99006 -32.33893 -31.74590 -31.47135 -28.92884 -27.83576 -25.26437 -24.26934 -23.76129 -22.82516 -22.50978 -21.98058 -21.53774 -19.58795 -18.71393 -18.48110 -17.87914 -17.65672 -17.07526 -16.83317 -16.61318 -16.29328 -16.17502 -15.90048 -15.63450 -15.21985 -14.96793 -14.59854 -14.52416 -14.48717 -14.37261 -14.24470 -13.74006 -13.49810 -13.24987 -13.10239 -12.72747 -12.60486 -12.57429 -12.46376 -12.38749 -12.09826 -12.05268 -11.69587 -11.60400 -11.54389 -11.30225 -11.14534 -10.88475 -10.61430 -10.58646 -10.19986 -9.73970 -8.82667 -8.16653 -6.31565 0.50501 0.60030 1.40492 1.42116 1.52826 1.53675 2.05197 2.41508 2.72966 3.02627 3.10546 3.12262 3.47733 3.56626 3.64613 3.91704 3.98602 4.07975 4.10527 4.17933 4.19026 4.35005 4.40921 4.50899 4.60433 4.68587 4.70695 4.72716 4.78944 4.83692 4.97084 5.03153 5.12034 5.14897 5.20368 5.31969 5.34958 5.35877 5.44366 5.52066 5.64705 5.77528 5.88609 5.96214 6.10825 6.14974 6.28389 6.66961 6.81059 6.98868 7.36772 7.47729 8.91151 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.001707 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.575300 B =16394.407173 C =16761.804813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.057 3.943 10 C -0.077 4.077 11 C -0.121 4.121 12 C -0.125 4.125 13 C 0.136 3.864 14 N -0.667 5.667 15 C 0.697 3.303 16 O -0.619 6.619 17 N -0.719 5.719 18 C 0.112 3.888 19 C 0.117 3.883 20 H 0.113 0.887 21 O -0.552 6.552 22 C 0.046 3.954 23 H 0.078 0.922 24 C -0.142 4.142 25 C -0.153 4.153 26 C 0.037 3.963 27 O -0.395 6.395 28 C -0.127 4.127 29 C -0.112 4.112 30 H 0.265 0.735 31 H 0.008 0.992 32 H -0.002 1.002 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.424 0.576 36 H 0.415 0.585 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.392 0.608 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.160 0.840 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.322 -31.612 1.552 37.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.077 4.077 11 C -0.140 4.140 12 C -0.145 4.145 13 C 0.042 3.958 14 N -0.316 5.316 15 C 0.397 3.603 16 O -0.498 6.498 17 N -0.376 5.376 18 C -0.012 4.012 19 C 0.057 3.943 20 H 0.131 0.869 21 O -0.359 6.359 22 C -0.013 4.013 23 H 0.096 0.904 24 C -0.179 4.179 25 C -0.191 4.191 26 C -0.039 4.039 27 O -0.315 6.315 28 C -0.147 4.147 29 C -0.131 4.131 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.017 0.983 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.262 0.738 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.242 0.758 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.178 0.822 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.048 -31.080 2.315 37.058 hybrid contribution -0.238 0.781 -0.074 0.820 sum 19.810 -30.300 2.241 36.270 Atomic orbital electron populations 1.70092 1.07694 1.27901 1.51393 1.25949 0.95783 1.03151 0.94612 0.85416 0.78483 0.78307 0.78658 1.19368 1.20596 1.19181 1.21398 0.93144 0.91199 1.50833 0.92627 1.18091 0.92884 0.91197 0.95817 1.20410 0.97811 0.95748 0.93761 1.20920 0.98670 0.96729 0.97695 1.21133 0.99335 0.95821 0.98226 1.17358 0.94812 0.90081 0.93582 1.42212 1.34705 1.22946 1.31722 1.16139 0.81524 0.80456 0.82177 1.90934 1.42200 1.79486 1.37225 1.44765 1.40880 1.21136 1.30793 1.21892 1.00161 0.88444 0.90742 1.21998 0.98830 0.90177 0.83286 0.86885 1.86609 1.40845 1.77325 1.31123 1.23487 0.99891 0.93887 0.84019 0.90375 1.22900 0.97042 0.98688 0.99297 1.23162 0.98804 1.02713 0.94411 1.23778 0.94558 0.90344 0.95214 1.88899 1.78290 1.38028 1.26271 1.21011 0.98442 0.98185 0.97092 1.20966 0.97948 0.96683 0.97489 0.92610 0.97401 0.98334 0.87400 0.85784 0.73750 0.74744 0.91843 0.91915 0.75761 0.89275 0.89564 0.88513 0.90497 0.91302 0.88308 0.82224 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.53 -31.03 9.09 25.60 0.23 -30.80 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.06 3.19 5.10 29.10 0.15 3.34 16 10 C -0.08 -3.59 5.07 -19.84 -0.10 -3.69 16 11 C -0.12 -5.40 9.69 22.25 0.22 -5.18 16 12 C -0.12 -4.92 8.69 22.39 0.19 -4.72 16 13 C 0.14 4.44 6.30 38.15 0.24 4.68 16 14 N -0.67 -15.95 5.34 -317.18 -1.70 -17.65 16 15 C 0.70 18.65 8.41 179.05 1.51 20.16 16 16 O -0.62 -22.88 13.78 -3.98 -0.05 -22.93 16 17 N -0.72 -12.48 5.45 -478.53 -2.61 -15.09 16 18 C 0.11 1.87 5.21 86.38 0.45 2.32 16 19 C 0.12 1.20 2.66 30.59 0.08 1.28 16 20 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 21 O -0.55 -4.47 12.58 -148.98 -1.87 -6.35 16 22 C 0.05 0.46 3.16 30.97 0.10 0.56 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 C -0.14 -0.92 6.39 31.58 0.20 -0.72 16 25 C -0.15 -0.94 7.15 31.89 0.23 -0.71 16 26 C 0.04 0.35 7.72 72.66 0.56 0.91 16 27 O -0.39 -6.01 10.63 -148.98 -1.58 -7.59 16 28 C -0.13 -3.94 9.97 22.39 0.22 -3.71 16 29 C -0.11 -4.38 9.69 22.25 0.22 -4.17 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.01 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 33 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 34 H 0.12 5.03 6.22 -2.91 -0.02 5.01 16 35 H 0.42 6.35 8.84 -92.71 -0.82 5.53 16 36 H 0.42 4.64 8.37 -92.71 -0.78 3.86 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.37 7.76 -2.39 -0.02 1.35 16 39 H 0.39 1.16 9.04 -74.06 -0.67 0.49 16 40 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.09 0.60 7.51 -2.39 -0.02 0.58 16 42 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 47 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -78.95 390.96 -1.80 -80.76 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -1.26 Total: 18.49 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.96 Total: -19.82 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -4.02 Total: -89.77 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -3.51 Total: -36.87 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -78.95 -1.80 -80.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.362 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds