Wall clock time and date at job start Tue Mar 31 2020 22:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48495 * 109.47097 * 270.00040 * 3 2 1 5 5 H 1.48501 * 109.47000 * 29.99714 * 3 2 1 6 6 H 1.48495 * 109.46996 * 149.99918 * 3 2 1 7 7 C 1.37877 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00355 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.50695 * 109.47528 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.93052 * 270.02705 * 10 9 7 12 12 C 1.38107 * 120.06964 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.93008 * 359.97420 * 12 11 10 14 14 N 1.39952 * 120.06716 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00199 * 33.31790 * 14 13 12 16 16 O 1.21596 * 119.99996 * 5.31430 * 15 14 13 17 17 N 1.34771 * 120.00351 * 185.31444 * 15 14 13 18 18 C 1.47426 * 125.64810 * 359.69051 * 17 15 14 19 19 C 1.54687 * 104.94424 * 204.07382 * 18 17 15 20 20 H 1.08996 * 110.81455 * 81.32391 * 19 18 17 21 21 C 1.53000 * 111.10307 * 205.10892 * 19 18 17 22 22 O 1.42900 * 109.47349 * 287.36845 * 21 19 18 23 23 C 1.55152 * 101.67641 * 323.27618 * 19 18 17 24 24 H 1.08999 * 110.72513 * 276.97152 * 23 19 18 25 25 C 1.53006 * 110.72019 * 153.69722 * 23 19 18 26 26 O 1.42895 * 109.47307 * 180.02562 * 25 23 19 27 27 C 1.47026 * 125.65197 * 179.97438 * 17 15 14 28 28 C 1.38859 * 119.86263 * 0.02562 * 13 12 11 29 29 C 1.38112 * 119.92846 * 359.97438 * 28 13 12 30 30 H 0.96992 * 120.00445 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46888 * 59.99620 * 9 7 2 32 32 H 1.09004 * 109.46825 * 300.00231 * 9 7 2 33 33 H 1.07998 * 119.96204 * 0.02562 * 11 10 9 34 34 H 1.08002 * 120.03739 * 180.25166 * 12 11 10 35 35 H 0.96997 * 119.99655 * 213.31877 * 14 13 12 36 36 H 1.09004 * 110.36647 * 323.00779 * 18 17 15 37 37 H 1.09006 * 110.36799 * 85.32512 * 18 17 15 38 38 H 1.08999 * 109.47406 * 47.36913 * 21 19 18 39 39 H 1.09004 * 109.47422 * 167.36936 * 21 19 18 40 40 H 0.96700 * 114.00431 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47236 * 300.02980 * 25 23 19 42 42 H 1.09001 * 109.46864 * 60.02383 * 25 23 19 43 43 H 0.96702 * 114.00424 * 179.97438 * 26 25 23 44 44 H 1.09000 * 109.87795 * 298.32256 * 27 17 15 45 45 H 1.09000 * 109.88300 * 59.48569 * 27 17 15 46 46 H 1.08000 * 120.03483 * 180.02562 * 28 13 12 47 47 H 1.07999 * 119.96863 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 6 4.2431 -3.2657 1.1994 12 6 4.7040 -4.5676 1.2026 13 6 4.9370 -5.2231 0.0008 14 7 5.4046 -6.5422 0.0007 15 6 5.0251 -7.3918 0.9757 16 8 4.2021 -7.0427 1.7999 17 7 5.5578 -8.6282 1.0372 18 6 6.5555 -9.1814 0.1034 19 6 6.3780 -10.7154 0.1926 20 1 5.5439 -11.0455 -0.4265 21 6 7.6672 -11.4426 -0.1951 22 8 7.8646 -11.3422 -1.6068 23 6 6.0627 -10.9079 1.6995 24 1 6.9814 -10.9366 2.2853 25 6 5.2371 -12.1768 1.9220 26 8 4.9618 -12.3276 3.3161 27 6 5.2358 -9.6510 2.0431 28 6 4.7060 -4.5667 -1.2009 29 6 4.2450 -3.2648 -1.1974 30 1 -0.4850 0.8399 -0.0004 31 1 3.8746 -0.6799 0.8912 32 1 3.8752 -0.6803 -0.8889 33 1 4.0613 -2.7555 2.1337 34 1 4.8788 -5.0769 2.1388 35 1 6.0018 -6.8450 -0.7011 36 1 6.3588 -8.8346 -0.9112 37 1 7.5620 -8.8996 0.4129 38 1 8.5111 -10.9873 0.3231 39 1 7.5911 -12.4927 0.0873 40 1 8.6651 -11.7821 -1.9243 41 1 4.2989 -12.1009 1.3724 42 1 5.7974 -13.0416 1.5666 43 1 4.4403 -13.1130 3.5313 44 1 5.5035 -9.2910 3.0365 45 1 4.1720 -9.8857 2.0058 46 1 4.8859 -5.0740 -2.1372 47 1 4.0648 -2.7538 -2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932562557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:26 Heat of formation + Delta-G solvation = -97.234806 kcal Electronic energy + Delta-G solvation = -28040.261035 eV Core-core repulsion = 23995.016794 eV Total energy + Delta-G solvation = -4045.244241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.87103 -39.43494 -38.08380 -37.25285 -36.45773 -34.84997 -33.14447 -32.57974 -30.74073 -30.27499 -30.27160 -27.30780 -26.16012 -25.82813 -23.05819 -22.34966 -22.12469 -20.88187 -20.40935 -19.74899 -18.47172 -17.91481 -17.64728 -17.23058 -16.69726 -16.50185 -15.85179 -15.53599 -15.12011 -14.84194 -14.65040 -14.44077 -14.16355 -14.01889 -13.58353 -13.43837 -13.19384 -13.04709 -12.76667 -12.51902 -12.39727 -12.33209 -12.16097 -11.88293 -11.68611 -11.48472 -11.39374 -11.20642 -10.72837 -10.66632 -10.45934 -10.43160 -10.38013 -9.97027 -9.80911 -9.60122 -9.22928 -8.86811 -8.51996 -8.26515 -7.30934 -6.00499 -3.99178 1.94678 2.08361 2.42022 3.17714 3.32740 3.33068 3.40695 3.44061 3.61856 3.78997 3.99128 4.15038 4.45631 4.47172 4.51779 4.59251 4.63605 4.80656 4.83892 4.87215 4.96770 5.05601 5.19414 5.23512 5.30702 5.43719 5.50271 5.58245 5.62154 5.71465 5.86016 5.94839 6.05458 6.16769 6.19665 6.61820 6.67464 6.91444 7.02327 7.02894 7.05671 7.10393 7.11413 7.16919 7.66792 7.68347 7.79016 7.84048 8.53289 8.57652 9.06382 9.59633 11.12603 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.002067 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.406149 B =13543.629623 C =14314.550879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.042 4.042 11 C -0.103 4.103 12 C -0.117 4.117 13 C 0.129 3.871 14 N -0.680 5.680 15 C 0.719 3.281 16 O -0.564 6.564 17 N -0.640 5.640 18 C 0.109 3.891 19 C -0.094 4.094 20 H 0.097 0.903 21 C 0.087 3.913 22 O -0.572 6.572 23 C -0.093 4.093 24 H 0.096 0.904 25 C 0.086 3.914 26 O -0.570 6.570 27 C 0.139 3.861 28 C -0.145 4.145 29 C -0.104 4.104 30 H 0.263 0.737 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.400 0.600 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.383 0.617 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.383 0.617 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.115 0.885 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.662 -28.964 -0.605 35.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.022 4.022 10 C -0.042 4.042 11 C -0.122 4.122 12 C -0.138 4.138 13 C 0.036 3.964 14 N -0.327 5.327 15 C 0.422 3.578 16 O -0.439 6.439 17 N -0.379 5.379 18 C -0.014 4.014 19 C -0.113 4.113 20 H 0.116 0.884 21 C 0.008 3.992 22 O -0.378 6.378 23 C -0.112 4.112 24 H 0.114 0.886 25 C 0.008 3.992 26 O -0.376 6.376 27 C 0.016 3.984 28 C -0.166 4.166 29 C -0.123 4.123 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.235 0.765 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.230 0.770 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.230 0.770 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.133 0.867 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.648 -27.642 0.118 33.344 hybrid contribution 0.755 -0.267 -0.532 0.961 sum 19.403 -27.909 -0.413 33.994 Atomic orbital electron populations 1.69907 1.06253 1.26869 1.50908 1.25016 0.94744 0.99004 0.94627 0.86796 0.80416 0.83696 0.78544 1.20230 1.21324 1.18914 1.20970 0.88350 0.94675 1.50888 0.90785 1.18795 0.97408 0.88711 0.97274 1.20281 0.93696 0.98115 0.92149 1.20955 0.99069 0.93814 0.98361 1.21016 1.01499 0.94354 0.96885 1.17316 1.02385 0.82337 0.94401 1.42496 1.51480 1.10000 1.28747 1.15385 0.80955 0.79129 0.82335 1.90996 1.35361 1.75564 1.41985 1.47580 1.45378 1.12822 1.32166 1.22239 0.92606 0.92520 0.94076 1.22270 0.98671 0.94956 0.95403 0.88440 1.22097 0.96174 0.98931 0.81960 1.86488 1.48867 1.80181 1.22216 1.22215 0.99772 0.93997 0.95216 0.88571 1.22132 0.98244 0.96113 0.82715 1.86495 1.76894 1.50302 1.23938 1.21712 0.99586 0.85328 0.91762 1.20682 1.04213 0.96187 0.95496 1.20825 0.99358 0.93722 0.98378 0.92679 0.95427 0.95886 0.86027 0.85626 0.76466 0.90268 0.91155 0.92915 0.92963 0.76970 0.92929 0.93080 0.76976 0.90829 0.91063 0.86747 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.93 16 7 C -0.51 -14.98 9.65 -34.44 -0.33 -15.31 16 8 H 0.07 2.40 7.98 -52.49 -0.42 1.98 16 9 C 0.02 0.38 4.17 -29.04 -0.12 0.25 16 10 C -0.04 -0.92 5.07 -104.59 -0.53 -1.45 16 11 C -0.10 -2.16 9.69 -39.61 -0.38 -2.54 16 12 C -0.12 -2.28 8.66 -39.40 -0.34 -2.62 16 13 C 0.13 2.25 6.28 -83.69 -0.53 1.72 16 14 N -0.68 -9.63 5.30 -14.22 -0.08 -9.71 16 15 C 0.72 11.17 8.23 -86.93 -0.72 10.46 16 16 O -0.56 -11.30 14.35 5.28 0.08 -11.22 16 17 N -0.64 -7.27 3.33 -176.37 -0.59 -7.85 16 18 C 0.11 0.83 6.05 -2.65 -0.02 0.81 16 19 C -0.09 -0.54 2.73 -88.59 -0.24 -0.78 16 20 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 21 C 0.09 0.34 6.50 37.16 0.24 0.58 16 22 O -0.57 -2.81 13.62 -35.23 -0.48 -3.29 16 23 C -0.09 -0.58 2.71 -88.78 -0.24 -0.83 16 24 H 0.10 0.56 8.04 -51.93 -0.42 0.14 16 25 C 0.09 0.44 6.36 37.16 0.24 0.68 16 26 O -0.57 -3.63 13.50 -35.23 -0.48 -4.11 16 27 C 0.14 1.41 6.32 -3.06 -0.02 1.39 16 28 C -0.15 -2.46 9.96 -39.40 -0.39 -2.85 16 29 C -0.10 -2.03 9.69 -39.61 -0.38 -2.42 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.03 0.67 7.14 -51.92 -0.37 0.30 16 32 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 33 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 34 H 0.13 2.47 6.40 -52.49 -0.34 2.13 16 35 H 0.40 4.23 7.27 -40.82 -0.30 3.94 16 36 H 0.08 0.58 7.23 -51.93 -0.38 0.21 16 37 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 38 H 0.05 0.17 7.96 -51.93 -0.41 -0.25 16 39 H 0.05 0.14 8.10 -51.93 -0.42 -0.28 16 40 H 0.38 0.26 9.12 45.56 0.42 0.67 16 41 H 0.05 0.27 8.06 -51.93 -0.42 -0.15 16 42 H 0.05 0.17 8.10 -51.93 -0.42 -0.25 16 43 H 0.38 0.79 9.12 45.56 0.42 1.21 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 46 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -38.39 386.20 -9.02 -47.41 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.54 Total: 4.33 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.86 Total: -11.01 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.11 Total: -45.09 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.88 Total: -18.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.39 -9.02 -47.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.828 kcal (2) G-P(sol) polarization free energy of solvation -38.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds