Wall clock time and date at job start Tue Mar 31 2020 22:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48495 * 109.47097 * 270.00040 * 3 2 1 5 5 H 1.48501 * 109.47000 * 29.99714 * 3 2 1 6 6 H 1.48495 * 109.46996 * 149.99918 * 3 2 1 7 7 C 1.37877 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00355 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.50695 * 109.47528 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.93052 * 270.02705 * 10 9 7 12 12 C 1.38107 * 120.06964 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.93008 * 359.97420 * 12 11 10 14 14 N 1.39952 * 120.06716 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00199 * 33.31790 * 14 13 12 16 16 O 1.21596 * 119.99996 * 5.31430 * 15 14 13 17 17 N 1.34771 * 120.00351 * 185.31444 * 15 14 13 18 18 C 1.47426 * 125.64810 * 359.69051 * 17 15 14 19 19 C 1.54687 * 104.94424 * 204.07382 * 18 17 15 20 20 H 1.08996 * 110.81455 * 81.32391 * 19 18 17 21 21 C 1.53000 * 111.10307 * 205.10892 * 19 18 17 22 22 O 1.42900 * 109.47349 * 287.36845 * 21 19 18 23 23 C 1.55152 * 101.67641 * 323.27618 * 19 18 17 24 24 H 1.08999 * 110.72513 * 276.97152 * 23 19 18 25 25 C 1.53006 * 110.72019 * 153.69722 * 23 19 18 26 26 O 1.42895 * 109.47307 * 180.02562 * 25 23 19 27 27 C 1.47026 * 125.65197 * 179.97438 * 17 15 14 28 28 C 1.38859 * 119.86263 * 0.02562 * 13 12 11 29 29 C 1.38112 * 119.92846 * 359.97438 * 28 13 12 30 30 H 0.96992 * 120.00445 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46888 * 59.99620 * 9 7 2 32 32 H 1.09004 * 109.46825 * 300.00231 * 9 7 2 33 33 H 1.07998 * 119.96204 * 0.02562 * 11 10 9 34 34 H 1.08002 * 120.03739 * 180.25166 * 12 11 10 35 35 H 0.96997 * 119.99655 * 213.31877 * 14 13 12 36 36 H 1.09004 * 110.36647 * 323.00779 * 18 17 15 37 37 H 1.09006 * 110.36799 * 85.32512 * 18 17 15 38 38 H 1.08999 * 109.47406 * 47.36913 * 21 19 18 39 39 H 1.09004 * 109.47422 * 167.36936 * 21 19 18 40 40 H 0.96700 * 114.00431 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47236 * 300.02980 * 25 23 19 42 42 H 1.09001 * 109.46864 * 60.02383 * 25 23 19 43 43 H 0.96702 * 114.00424 * 179.97438 * 26 25 23 44 44 H 1.09000 * 109.87795 * 298.32256 * 27 17 15 45 45 H 1.09000 * 109.88300 * 59.48569 * 27 17 15 46 46 H 1.08000 * 120.03483 * 180.02562 * 28 13 12 47 47 H 1.07999 * 119.96863 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 6 4.2431 -3.2657 1.1994 12 6 4.7040 -4.5676 1.2026 13 6 4.9370 -5.2231 0.0008 14 7 5.4046 -6.5422 0.0007 15 6 5.0251 -7.3918 0.9757 16 8 4.2021 -7.0427 1.7999 17 7 5.5578 -8.6282 1.0372 18 6 6.5555 -9.1814 0.1034 19 6 6.3780 -10.7154 0.1926 20 1 5.5439 -11.0455 -0.4265 21 6 7.6672 -11.4426 -0.1951 22 8 7.8646 -11.3422 -1.6068 23 6 6.0627 -10.9079 1.6995 24 1 6.9814 -10.9366 2.2853 25 6 5.2371 -12.1768 1.9220 26 8 4.9618 -12.3276 3.3161 27 6 5.2358 -9.6510 2.0431 28 6 4.7060 -4.5667 -1.2009 29 6 4.2450 -3.2648 -1.1974 30 1 -0.4850 0.8399 -0.0004 31 1 3.8746 -0.6799 0.8912 32 1 3.8752 -0.6803 -0.8889 33 1 4.0613 -2.7555 2.1337 34 1 4.8788 -5.0769 2.1388 35 1 6.0018 -6.8450 -0.7011 36 1 6.3588 -8.8346 -0.9112 37 1 7.5620 -8.8996 0.4129 38 1 8.5111 -10.9873 0.3231 39 1 7.5911 -12.4927 0.0873 40 1 8.6651 -11.7821 -1.9243 41 1 4.2989 -12.1009 1.3724 42 1 5.7974 -13.0416 1.5666 43 1 4.4403 -13.1130 3.5313 44 1 5.5035 -9.2910 3.0365 45 1 4.1720 -9.8857 2.0058 46 1 4.8859 -5.0740 -2.1372 47 1 4.0648 -2.7538 -2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932562557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:24 Heat of formation + Delta-G solvation = -128.652153 kcal Electronic energy + Delta-G solvation = -28041.623393 eV Core-core repulsion = 23995.016794 eV Total energy + Delta-G solvation = -4046.606599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.94091 -40.44280 -39.30175 -37.60160 -37.06079 -36.32512 -34.96665 -33.66562 -32.36599 -31.79501 -30.94277 -28.89954 -26.86744 -26.61702 -24.68599 -23.86883 -22.93960 -22.00230 -21.28377 -21.00429 -19.51390 -18.95739 -18.50378 -18.32398 -17.86146 -17.36891 -16.96969 -16.56518 -16.16639 -15.96011 -15.93166 -15.74135 -15.02454 -14.95240 -14.82038 -14.37405 -14.32645 -14.28212 -14.15063 -13.84984 -13.83484 -13.50452 -13.26100 -12.98225 -12.82406 -12.45980 -12.38612 -12.21146 -12.07912 -11.87851 -11.75850 -11.71381 -11.57226 -11.37299 -11.03392 -10.93863 -10.77369 -10.76464 -9.86178 -9.78167 -8.80802 -8.28408 -6.33993 0.44100 0.55430 1.35256 1.37237 1.40160 1.52367 1.93801 2.36929 2.76850 2.94837 2.97426 3.05447 3.24426 3.41393 3.77752 4.01418 4.02515 4.13168 4.13547 4.20388 4.31091 4.35066 4.41697 4.49221 4.52054 4.58169 4.61073 4.63655 4.64835 4.68006 4.78662 4.86317 4.95671 5.03199 5.06271 5.08915 5.24901 5.27455 5.39021 5.41728 5.56354 5.62564 5.88794 6.00039 6.15360 6.30192 6.72574 6.74395 6.90437 6.97304 7.29132 7.34855 8.88468 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.002067 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.406149 B =13543.629623 C =14314.550879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.521 4.521 8 H 0.022 0.978 9 C 0.023 3.977 10 C -0.075 4.075 11 C -0.117 4.117 12 C -0.128 4.128 13 C 0.138 3.862 14 N -0.665 5.665 15 C 0.712 3.288 16 O -0.618 6.618 17 N -0.633 5.633 18 C 0.101 3.899 19 C -0.085 4.085 20 H 0.092 0.908 21 C 0.090 3.910 22 O -0.593 6.593 23 C -0.081 4.081 24 H 0.107 0.893 25 C 0.086 3.914 26 O -0.595 6.595 27 C 0.133 3.867 28 C -0.132 4.132 29 C -0.108 4.108 30 H 0.267 0.733 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.421 0.579 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.400 0.600 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.158 0.842 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.922 -30.572 -2.294 38.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.559 4.559 8 H 0.040 0.960 9 C -0.015 4.015 10 C -0.076 4.076 11 C -0.136 4.136 12 C -0.149 4.149 13 C 0.044 3.956 14 N -0.314 5.314 15 C 0.415 3.585 16 O -0.497 6.497 17 N -0.370 5.370 18 C -0.021 4.021 19 C -0.104 4.104 20 H 0.110 0.890 21 C 0.012 3.988 22 O -0.402 6.402 23 C -0.100 4.100 24 H 0.125 0.875 25 C 0.008 3.992 26 O -0.403 6.403 27 C 0.010 3.990 28 C -0.152 4.152 29 C -0.127 4.127 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.260 0.740 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.250 0.750 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.176 0.824 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 21.980 -29.342 -1.609 36.696 hybrid contribution -0.285 0.007 0.011 0.285 sum 21.695 -29.335 -1.598 36.520 Atomic orbital electron populations 1.70077 1.08434 1.28279 1.52405 1.26064 0.95675 1.03634 0.93940 0.85574 0.79379 0.77663 0.79547 1.18491 1.20987 1.16900 1.21189 0.91037 0.92855 1.50774 0.95955 1.18642 0.94040 0.91010 0.97762 1.20186 0.96333 0.97443 0.93625 1.20951 0.99955 0.94623 0.98029 1.21001 1.02194 0.93911 0.97745 1.17416 1.00821 0.83444 0.93929 1.42276 1.51439 1.08584 1.29129 1.15624 0.80741 0.80300 0.81884 1.90963 1.37873 1.76979 1.43919 1.47612 1.45078 1.11524 1.32833 1.22575 0.92159 0.93848 0.93477 1.22219 0.99908 0.93620 0.94678 0.88993 1.22079 0.95112 0.99756 0.81811 1.86430 1.50323 1.80789 1.22649 1.22170 0.99570 0.92394 0.95826 0.87506 1.22187 0.98362 0.96352 0.82289 1.86448 1.77461 1.51757 1.24681 1.21839 0.99483 0.86761 0.90915 1.20993 1.02206 0.95101 0.96881 1.21032 0.99026 0.94813 0.97826 0.92382 0.95270 0.94423 0.86745 0.86379 0.74004 0.89541 0.89479 0.91738 0.91072 0.74884 0.93261 0.90232 0.75009 0.92599 0.92841 0.82431 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.96 45.14 27.47 68.60 1.88 47.02 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.52 -31.65 9.65 25.60 0.25 -31.40 16 8 H 0.02 1.53 7.98 -2.91 -0.02 1.51 16 9 C 0.02 1.12 4.17 29.10 0.12 1.25 16 10 C -0.08 -3.36 5.07 -19.84 -0.10 -3.46 16 11 C -0.12 -5.07 9.69 22.25 0.22 -4.86 16 12 C -0.13 -5.11 8.66 22.39 0.19 -4.91 16 13 C 0.14 4.70 6.28 38.14 0.24 4.94 16 14 N -0.67 -17.84 5.30 -317.18 -1.68 -19.52 16 15 C 0.71 22.05 8.23 179.06 1.47 23.52 16 16 O -0.62 -25.71 14.35 -4.02 -0.06 -25.77 16 17 N -0.63 -13.91 3.33 -830.18 -2.76 -16.67 16 18 C 0.10 1.29 6.05 86.78 0.52 1.81 16 19 C -0.08 -0.75 2.73 -9.48 -0.03 -0.78 16 20 H 0.09 0.96 8.05 -2.39 -0.02 0.94 16 21 C 0.09 0.37 6.50 71.98 0.47 0.83 16 22 O -0.59 -3.79 13.62 -148.98 -2.03 -5.82 16 23 C -0.08 -0.86 2.71 -9.60 -0.03 -0.89 16 24 H 0.11 0.96 8.04 -2.39 -0.02 0.94 16 25 C 0.09 0.71 6.36 71.98 0.46 1.17 16 26 O -0.59 -6.84 13.50 -148.98 -2.01 -8.85 16 27 C 0.13 2.70 6.32 86.73 0.55 3.25 16 28 C -0.13 -4.16 9.96 22.39 0.22 -3.94 16 29 C -0.11 -4.12 9.69 22.25 0.22 -3.91 16 30 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 31 H 0.03 1.42 7.14 -2.38 -0.02 1.40 16 32 H 0.04 1.74 7.51 -2.39 -0.02 1.72 16 33 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.12 4.86 6.40 -2.91 -0.02 4.84 16 35 H 0.42 7.68 7.27 -92.71 -0.67 7.00 16 36 H 0.09 1.00 7.23 -2.38 -0.02 0.99 16 37 H 0.09 0.88 7.90 -2.38 -0.02 0.86 16 38 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 39 H 0.07 0.06 8.10 -2.39 -0.02 0.04 16 40 H 0.40 -0.80 9.12 -74.06 -0.68 -1.47 16 41 H 0.05 0.44 8.06 -2.39 -0.02 0.42 16 42 H 0.08 0.24 8.10 -2.39 -0.02 0.22 16 43 H 0.40 1.15 9.12 -74.06 -0.68 0.47 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.26 7.77 -2.39 -0.02 1.25 16 46 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 47 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -88.04 386.20 -2.19 -90.23 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -1.07 Total: 17.58 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 5.24 Total: -16.71 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.14 Total: -97.68 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -4.10 Total: -40.44 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -88.04 -2.19 -90.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.427 kcal (2) G-P(sol) polarization free energy of solvation -88.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds