Wall clock time and date at job start Tue Mar 31 2020 22:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99687 * 2 1 4 4 H 1.48509 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 299.99788 * 3 2 1 6 6 H 1.48497 * 109.47477 * 60.00174 * 3 2 1 7 7 C 1.37874 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47178 * 180.02562 * 9 7 2 11 11 C 1.38279 * 119.93252 * 89.99792 * 10 9 7 12 12 C 1.38117 * 120.07306 * 179.97438 * 11 10 9 13 13 C 1.38867 * 119.92799 * 0.02562 * 12 11 10 14 14 N 1.39944 * 120.07221 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00212 * 213.24743 * 14 13 12 16 16 O 1.21582 * 119.99784 * 5.42497 * 15 14 13 17 17 N 1.34774 * 119.99663 * 185.42505 * 15 14 13 18 18 C 1.46928 * 120.62531 * 174.96089 * 17 15 14 19 19 C 1.53188 * 108.77628 * 233.62676 * 18 17 15 20 20 C 1.53037 * 109.31392 * 305.36987 * 19 18 17 21 21 O 1.42903 * 109.46205 * 301.35362 * 20 19 18 22 22 C 1.53007 * 109.45867 * 181.38465 * 20 19 18 23 23 O 1.42907 * 109.46850 * 184.99906 * 22 20 19 24 24 C 1.53039 * 109.53862 * 61.36469 * 20 19 18 25 25 C 1.46920 * 120.63624 * 354.98525 * 17 15 14 26 26 C 1.38874 * 119.86022 * 0.25239 * 13 12 11 27 27 C 1.38114 * 119.92614 * 359.49488 * 26 13 12 28 28 H 0.97001 * 120.00063 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47300 * 59.99884 * 9 7 2 30 30 H 1.09003 * 109.47007 * 299.99847 * 9 7 2 31 31 H 1.08000 * 119.96651 * 359.96141 * 11 10 9 32 32 H 1.07995 * 120.03618 * 179.97438 * 12 11 10 33 33 H 0.97005 * 119.99289 * 33.24724 * 14 13 12 34 34 H 1.09004 * 109.58512 * 113.84270 * 18 17 15 35 35 H 1.09001 * 109.70775 * 353.48912 * 18 17 15 36 36 H 1.08997 * 109.50158 * 185.41662 * 19 18 17 37 37 H 1.09003 * 109.49652 * 65.32462 * 19 18 17 38 38 H 0.96698 * 113.99969 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.46998 * 65.00025 * 22 20 19 40 40 H 1.08998 * 109.46938 * 304.99563 * 22 20 19 41 41 H 0.96701 * 113.99707 * 179.97438 * 23 22 20 42 42 H 1.08996 * 109.49616 * 58.58476 * 24 20 19 43 43 H 1.09002 * 109.49390 * 178.68510 * 24 20 19 44 44 H 1.09000 * 109.58468 * 246.16157 * 25 17 15 45 45 H 1.09004 * 109.58660 * 6.57919 * 25 17 15 46 46 H 1.07995 * 120.03481 * 179.71918 * 26 13 12 47 47 H 1.07999 * 119.96187 * 180.25516 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6779 -4.1684 1.2007 12 6 3.5750 -5.2185 1.2053 13 6 4.0281 -5.7479 0.0041 14 7 4.9375 -6.8115 0.0052 15 6 5.8625 -6.9083 -0.9703 16 8 5.9717 -6.0213 -1.7946 17 7 6.6663 -7.9884 -1.0318 18 6 7.6032 -8.1613 -2.1503 19 6 7.3685 -9.5371 -2.7819 20 6 7.4743 -10.6151 -1.7008 21 8 8.7657 -10.5536 -1.0919 22 6 7.2746 -11.9935 -2.3342 23 8 7.2573 -12.9902 -1.3102 24 6 6.3982 -10.3816 -0.6381 25 6 6.6220 -9.0154 0.0179 26 6 3.5812 -5.2158 -1.1983 27 6 2.6801 -4.1691 -1.1960 28 1 -0.4850 0.8401 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5566 0.8903 31 1 2.3257 -3.7558 2.1346 32 1 3.9244 -5.6269 2.1420 33 1 4.9020 -7.4791 0.7081 34 1 8.6273 -8.0982 -1.7822 35 1 7.4341 -7.3836 -2.8951 36 1 8.1200 -9.7176 -3.5505 37 1 6.3751 -9.5671 -3.2297 38 1 8.9040 -11.2103 -0.3958 39 1 8.0920 -12.1974 -3.0258 40 1 6.3282 -12.0113 -2.8746 41 1 7.1336 -13.8908 -1.6400 42 1 5.4140 -10.4036 -1.1060 43 1 6.4592 -11.1631 0.1193 44 1 7.5660 -9.0219 0.5628 45 1 5.8029 -8.8011 0.7044 46 1 3.9352 -5.6223 -2.1341 47 1 2.3290 -3.7576 -2.1308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932562610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:29 Heat of formation + Delta-G solvation = -98.254127 kcal Electronic energy + Delta-G solvation = -28505.551669 eV Core-core repulsion = 24460.263227 eV Total energy + Delta-G solvation = -4045.288442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.99191 -39.63401 -38.25191 -36.78008 -35.54478 -34.92147 -33.07527 -32.29883 -31.46438 -30.29338 -30.19385 -27.87448 -26.39729 -23.94676 -23.89475 -22.84327 -22.26763 -21.18545 -20.28766 -19.58722 -18.59890 -18.02667 -17.08557 -16.90613 -16.25284 -15.87021 -15.72364 -15.39740 -15.27152 -14.85408 -14.68016 -14.27892 -14.17860 -14.02972 -13.77539 -13.18625 -13.05945 -13.01349 -12.74763 -12.65382 -12.50164 -12.20281 -11.97161 -11.72866 -11.60494 -11.38687 -11.19658 -11.00574 -10.74755 -10.64279 -10.55053 -10.35228 -10.31231 -10.13200 -9.72952 -9.45402 -9.20504 -8.83241 -8.37414 -8.22075 -7.28254 -5.98680 -4.02053 1.99845 2.13163 2.50625 3.19057 3.33906 3.41355 3.48049 3.49559 3.65352 3.75869 4.19344 4.22898 4.44101 4.47875 4.63079 4.67001 4.77477 4.85004 4.92456 5.07978 5.12547 5.19539 5.35403 5.38021 5.47107 5.50326 5.55657 5.58144 5.65177 5.85579 5.99678 6.08174 6.14475 6.26848 6.32463 6.62350 6.73063 6.93864 7.00974 7.06714 7.21781 7.23266 7.27625 7.57049 7.78979 7.84588 7.92653 7.97823 8.38871 8.54593 9.03937 9.61669 11.10837 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.002040 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.098017 B =13721.820702 C =14033.232880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.046 4.046 11 C -0.107 4.107 12 C -0.146 4.146 13 C 0.123 3.877 14 N -0.682 5.682 15 C 0.704 3.296 16 O -0.568 6.568 17 N -0.629 5.629 18 C 0.137 3.863 19 C -0.122 4.122 20 C 0.141 3.859 21 O -0.552 6.552 22 C 0.048 3.952 23 O -0.573 6.573 24 C -0.156 4.156 25 C 0.116 3.884 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.261 0.739 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.381 0.619 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.383 0.617 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.124 0.876 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.869 -29.307 -1.841 32.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.046 4.046 11 C -0.126 4.126 12 C -0.167 4.167 13 C 0.030 3.970 14 N -0.332 5.332 15 C 0.407 3.593 16 O -0.444 6.444 17 N -0.367 5.367 18 C 0.014 3.986 19 C -0.160 4.160 20 C 0.099 3.901 21 O -0.358 6.358 22 C -0.030 4.030 23 O -0.380 6.380 24 C -0.195 4.195 25 C -0.008 4.008 26 C -0.137 4.137 27 C -0.126 4.126 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.236 0.764 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.229 0.771 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.231 0.769 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.142 0.858 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.998 -27.552 -2.520 31.470 hybrid contribution 0.276 -0.507 0.420 0.714 sum 15.273 -28.058 -2.100 32.015 Atomic orbital electron populations 1.69967 1.06005 1.26614 1.50891 1.25013 0.94883 0.99246 0.95294 0.86493 0.80257 0.83526 0.77549 1.19626 1.20971 1.21000 1.21133 0.93164 0.89889 1.50462 0.92378 1.18344 0.92555 0.89650 0.98314 1.20693 0.96687 0.95367 0.91876 1.20853 0.97647 0.95558 0.98509 1.20692 1.01739 0.98857 0.95414 1.17315 0.93718 0.91540 0.94383 1.42690 1.33117 1.28302 1.29043 1.15830 0.78966 0.82261 0.82291 1.90959 1.72286 1.38975 1.42228 1.47260 1.41466 1.21941 1.26016 1.21323 0.92429 0.96277 0.88574 1.21924 1.03335 0.94000 0.96768 1.21139 0.83755 0.92241 0.92919 1.86514 1.32476 1.60765 1.56086 1.22960 1.00726 0.88917 0.90383 1.86377 1.96565 1.19308 1.35711 1.22506 0.99664 0.97538 0.99747 1.21550 1.02301 0.87080 0.89820 1.21008 0.97491 0.98449 0.96765 1.20990 0.97259 0.95841 0.98483 0.92977 0.95332 0.95354 0.86053 0.86961 0.76413 0.90741 0.88520 0.89700 0.89955 0.77058 0.92585 0.92699 0.76886 0.90601 0.89398 0.90590 0.90570 0.85784 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.63 9.09 -34.44 -0.31 -14.95 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.05 1.27 5.10 -29.04 -0.15 1.12 16 10 C -0.05 -1.03 5.07 -104.59 -0.53 -1.56 16 11 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 12 C -0.15 -2.48 9.96 -39.39 -0.39 -2.88 16 13 C 0.12 2.13 6.29 -83.69 -0.53 1.61 16 14 N -0.68 -9.38 5.26 -14.22 -0.07 -9.46 16 15 C 0.70 10.44 8.04 -86.92 -0.70 9.74 16 16 O -0.57 -10.82 13.45 5.29 0.07 -10.75 16 17 N -0.63 -6.81 2.97 -178.51 -0.53 -7.34 16 18 C 0.14 1.35 6.17 -3.71 -0.02 1.33 16 19 C -0.12 -0.87 5.11 -26.61 -0.14 -1.01 16 20 C 0.14 0.89 0.80 -90.58 -0.07 0.82 16 21 O -0.55 -3.86 11.70 -40.08 -0.47 -4.33 16 22 C 0.05 0.23 6.20 37.16 0.23 0.46 16 23 O -0.57 -2.61 12.42 -40.08 -0.50 -3.11 16 24 C -0.16 -0.99 4.91 -26.61 -0.13 -1.12 16 25 C 0.12 0.88 6.19 -3.72 -0.02 0.86 16 26 C -0.12 -2.26 8.66 -39.39 -0.34 -2.60 16 27 C -0.11 -2.26 9.69 -39.61 -0.38 -2.64 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.40 4.05 6.27 -40.82 -0.26 3.80 16 34 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 35 H 0.10 1.11 7.04 -51.93 -0.37 0.74 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.38 1.83 8.72 45.56 0.40 2.23 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.38 0.29 9.12 45.56 0.42 0.71 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.50 7.51 -51.93 -0.39 0.11 16 44 H 0.08 0.55 7.81 -51.93 -0.41 0.15 16 45 H 0.08 0.49 5.57 -51.93 -0.29 0.20 16 46 H 0.12 2.39 6.39 -52.49 -0.34 2.06 16 47 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -35.58 379.72 -9.43 -45.01 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.40 Total: 5.03 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.97 Total: -11.78 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.13 Total: -42.94 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.90 Total: -18.18 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.58 -9.43 -45.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.248 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds