Wall clock time and date at job start Tue Mar 31 2020 22:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99687 * 2 1 4 4 H 1.48509 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 299.99788 * 3 2 1 6 6 H 1.48497 * 109.47477 * 60.00174 * 3 2 1 7 7 C 1.37874 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47178 * 180.02562 * 9 7 2 11 11 C 1.38279 * 119.93252 * 89.99792 * 10 9 7 12 12 C 1.38117 * 120.07306 * 179.97438 * 11 10 9 13 13 C 1.38867 * 119.92799 * 0.02562 * 12 11 10 14 14 N 1.39944 * 120.07221 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00212 * 213.24743 * 14 13 12 16 16 O 1.21582 * 119.99784 * 5.42497 * 15 14 13 17 17 N 1.34774 * 119.99663 * 185.42505 * 15 14 13 18 18 C 1.46928 * 120.62531 * 174.96089 * 17 15 14 19 19 C 1.53188 * 108.77628 * 233.62676 * 18 17 15 20 20 C 1.53037 * 109.31392 * 305.36987 * 19 18 17 21 21 O 1.42903 * 109.46205 * 301.35362 * 20 19 18 22 22 C 1.53007 * 109.45867 * 181.38465 * 20 19 18 23 23 O 1.42907 * 109.46850 * 184.99906 * 22 20 19 24 24 C 1.53039 * 109.53862 * 61.36469 * 20 19 18 25 25 C 1.46920 * 120.63624 * 354.98525 * 17 15 14 26 26 C 1.38874 * 119.86022 * 0.25239 * 13 12 11 27 27 C 1.38114 * 119.92614 * 359.49488 * 26 13 12 28 28 H 0.97001 * 120.00063 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47300 * 59.99884 * 9 7 2 30 30 H 1.09003 * 109.47007 * 299.99847 * 9 7 2 31 31 H 1.08000 * 119.96651 * 359.96141 * 11 10 9 32 32 H 1.07995 * 120.03618 * 179.97438 * 12 11 10 33 33 H 0.97005 * 119.99289 * 33.24724 * 14 13 12 34 34 H 1.09004 * 109.58512 * 113.84270 * 18 17 15 35 35 H 1.09001 * 109.70775 * 353.48912 * 18 17 15 36 36 H 1.08997 * 109.50158 * 185.41662 * 19 18 17 37 37 H 1.09003 * 109.49652 * 65.32462 * 19 18 17 38 38 H 0.96698 * 113.99969 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.46998 * 65.00025 * 22 20 19 40 40 H 1.08998 * 109.46938 * 304.99563 * 22 20 19 41 41 H 0.96701 * 113.99707 * 179.97438 * 23 22 20 42 42 H 1.08996 * 109.49616 * 58.58476 * 24 20 19 43 43 H 1.09002 * 109.49390 * 178.68510 * 24 20 19 44 44 H 1.09000 * 109.58468 * 246.16157 * 25 17 15 45 45 H 1.09004 * 109.58660 * 6.57919 * 25 17 15 46 46 H 1.07995 * 120.03481 * 179.71918 * 26 13 12 47 47 H 1.07999 * 119.96187 * 180.25516 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6779 -4.1684 1.2007 12 6 3.5750 -5.2185 1.2053 13 6 4.0281 -5.7479 0.0041 14 7 4.9375 -6.8115 0.0052 15 6 5.8625 -6.9083 -0.9703 16 8 5.9717 -6.0213 -1.7946 17 7 6.6663 -7.9884 -1.0318 18 6 7.6032 -8.1613 -2.1503 19 6 7.3685 -9.5371 -2.7819 20 6 7.4743 -10.6151 -1.7008 21 8 8.7657 -10.5536 -1.0919 22 6 7.2746 -11.9935 -2.3342 23 8 7.2573 -12.9902 -1.3102 24 6 6.3982 -10.3816 -0.6381 25 6 6.6220 -9.0154 0.0179 26 6 3.5812 -5.2158 -1.1983 27 6 2.6801 -4.1691 -1.1960 28 1 -0.4850 0.8401 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5566 0.8903 31 1 2.3257 -3.7558 2.1346 32 1 3.9244 -5.6269 2.1420 33 1 4.9020 -7.4791 0.7081 34 1 8.6273 -8.0982 -1.7822 35 1 7.4341 -7.3836 -2.8951 36 1 8.1200 -9.7176 -3.5505 37 1 6.3751 -9.5671 -3.2297 38 1 8.9040 -11.2103 -0.3958 39 1 8.0920 -12.1974 -3.0258 40 1 6.3282 -12.0113 -2.8746 41 1 7.1336 -13.8908 -1.6400 42 1 5.4140 -10.4036 -1.1060 43 1 6.4592 -11.1631 0.1193 44 1 7.5660 -9.0219 0.5628 45 1 5.8029 -8.8011 0.7044 46 1 3.9352 -5.6223 -2.1341 47 1 2.3290 -3.7576 -2.1308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932562610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:26 Heat of formation + Delta-G solvation = -124.960283 kcal Electronic energy + Delta-G solvation = -28506.709735 eV Core-core repulsion = 24460.263227 eV Total energy + Delta-G solvation = -4046.446508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.00501 -40.51241 -39.51124 -37.34639 -36.35640 -36.20055 -35.00614 -33.17650 -32.19525 -31.82499 -31.75006 -28.84075 -27.88328 -25.33481 -24.56226 -24.15625 -23.68858 -22.25935 -21.48918 -20.61761 -19.59224 -18.52361 -18.42276 -18.21808 -17.46694 -16.92343 -16.70359 -16.60212 -15.99164 -15.92793 -15.81708 -15.69029 -15.20680 -14.90577 -14.70422 -14.58757 -14.46412 -14.24199 -13.79344 -13.67039 -13.51014 -13.34312 -13.25388 -13.13788 -12.76451 -12.61276 -12.45402 -12.31454 -12.22439 -12.01291 -11.69056 -11.58026 -11.53255 -11.18943 -10.96849 -10.95194 -10.78295 -10.60150 -9.76183 -9.73542 -8.81181 -8.18095 -6.32395 0.48851 0.58828 1.38216 1.39093 1.47274 1.53052 2.00649 2.40147 2.75439 3.02983 3.10458 3.15396 3.25599 3.65505 3.75362 3.95755 4.05309 4.15463 4.17076 4.25219 4.32330 4.40067 4.45966 4.51204 4.53381 4.63975 4.66888 4.68576 4.74238 4.81390 4.88708 4.94732 5.06921 5.13739 5.24836 5.29998 5.34326 5.42432 5.50320 5.51475 5.63186 5.76818 5.86984 6.10196 6.14284 6.27563 6.79079 6.80204 6.80394 6.88299 7.35740 7.41630 8.89422 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.002040 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.098017 B =13721.820702 C =14033.232880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.058 3.942 10 C -0.077 4.077 11 C -0.111 4.111 12 C -0.130 4.130 13 C 0.138 3.862 14 N -0.668 5.668 15 C 0.699 3.301 16 O -0.616 6.616 17 N -0.618 5.618 18 C 0.134 3.866 19 C -0.117 4.117 20 C 0.139 3.861 21 O -0.564 6.564 22 C 0.054 3.946 23 O -0.584 6.584 24 C -0.148 4.148 25 C 0.110 3.890 26 C -0.123 4.123 27 C -0.119 4.119 28 H 0.266 0.734 29 H 0.002 0.998 30 H 0.010 0.990 31 H 0.128 0.872 32 H 0.158 0.842 33 H 0.419 0.581 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.391 0.609 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.400 0.600 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.789 -31.497 -0.522 35.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.078 4.078 11 C -0.129 4.129 12 C -0.150 4.150 13 C 0.043 3.957 14 N -0.320 5.320 15 C 0.401 3.599 16 O -0.496 6.496 17 N -0.355 5.355 18 C 0.011 3.989 19 C -0.155 4.155 20 C 0.098 3.902 21 O -0.372 6.372 22 C -0.024 4.024 23 O -0.393 6.393 24 C -0.187 4.187 25 C -0.012 4.012 26 C -0.144 4.144 27 C -0.137 4.137 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.028 0.972 31 H 0.146 0.854 32 H 0.176 0.824 33 H 0.261 0.739 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.240 0.760 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.250 0.750 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.940 -29.839 -1.171 34.332 hybrid contribution -0.235 0.012 0.007 0.235 sum 16.705 -29.827 -1.163 34.206 Atomic orbital electron populations 1.70076 1.07492 1.27837 1.51447 1.25899 0.95809 1.02975 0.94691 0.85419 0.78771 0.78922 0.78076 1.19389 1.20192 1.19756 1.21408 0.92938 0.91444 1.50698 0.93203 1.18082 0.92836 0.90928 0.96025 1.20404 0.97937 0.95731 0.93724 1.20964 0.98071 0.96328 0.97563 1.20981 0.99857 0.97178 0.97025 1.17380 0.93008 0.91528 0.93743 1.42480 1.32078 1.27820 1.29573 1.16037 0.79412 0.82673 0.81779 1.90936 1.73684 1.41031 1.43945 1.47325 1.40180 1.21224 1.26779 1.21377 0.92135 0.97358 0.88005 1.21875 1.03772 0.92599 0.97298 1.21116 0.83609 0.92814 0.92613 1.86491 1.32705 1.61405 1.56617 1.22821 1.01193 0.88174 0.90248 1.86325 1.96606 1.20416 1.35954 1.22448 0.99440 0.96847 0.99950 1.21830 1.03424 0.86733 0.89207 1.20993 0.97299 0.98232 0.97840 1.20910 0.98238 0.96841 0.97748 0.92546 0.98005 0.97174 0.85409 0.82431 0.73937 0.90701 0.90753 0.88585 0.89893 0.75952 0.92259 0.92086 0.74957 0.90913 0.88134 0.89711 0.89090 0.86058 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.53 -31.34 9.09 25.60 0.23 -31.11 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 9 C 0.06 3.23 5.10 29.10 0.15 3.37 16 10 C -0.08 -3.59 5.07 -19.84 -0.10 -3.69 16 11 C -0.11 -4.32 9.69 22.25 0.22 -4.10 16 12 C -0.13 -4.07 9.96 22.39 0.22 -3.85 16 13 C 0.14 4.53 6.29 38.15 0.24 4.77 16 14 N -0.67 -16.71 5.26 -317.18 -1.67 -18.37 16 15 C 0.70 19.81 8.04 179.06 1.44 21.25 16 16 O -0.62 -23.55 13.45 -3.97 -0.05 -23.60 16 17 N -0.62 -12.34 2.97 -836.93 -2.49 -14.83 16 18 C 0.13 2.53 6.17 86.36 0.53 3.06 16 19 C -0.12 -1.49 5.11 30.67 0.16 -1.33 16 20 C 0.14 1.41 0.80 -10.77 -0.01 1.40 16 21 O -0.56 -6.48 11.70 -144.35 -1.69 -8.17 16 22 C 0.05 0.38 6.20 71.98 0.45 0.82 16 23 O -0.58 -3.58 12.42 -144.35 -1.79 -5.38 16 24 C -0.15 -1.43 4.91 30.67 0.15 -1.28 16 25 C 0.11 1.34 6.19 86.36 0.53 1.87 16 26 C -0.12 -4.79 8.66 22.39 0.19 -4.60 16 27 C -0.12 -5.21 9.69 22.25 0.22 -4.99 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 30 H 0.01 0.57 8.08 -2.39 -0.02 0.55 16 31 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.42 6.91 6.27 -92.70 -0.58 6.32 16 34 H 0.07 1.41 7.81 -2.38 -0.02 1.39 16 35 H 0.07 1.75 7.04 -2.39 -0.02 1.73 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.39 2.69 8.72 -74.06 -0.65 2.04 16 39 H 0.06 0.38 8.14 -2.39 -0.02 0.37 16 40 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.40 -0.52 9.12 -74.06 -0.68 -1.19 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.10 0.78 7.51 -2.39 -0.02 0.77 16 44 H 0.08 0.95 7.81 -2.39 -0.02 0.93 16 45 H 0.09 0.82 5.57 -2.38 -0.01 0.80 16 46 H 0.12 4.78 6.39 -2.91 -0.02 4.76 16 47 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -79.18 379.72 -1.18 -80.36 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -0.89 Total: 16.43 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 5.08 Total: -17.68 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -3.87 Total: -89.97 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -3.53 Total: -37.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.18 -1.18 -80.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.602 kcal (2) G-P(sol) polarization free energy of solvation -79.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds