Wall clock time and date at job start Tue Mar 31 2020 22:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48492 * 109.47106 * 269.99699 * 3 2 1 5 5 H 1.48500 * 109.46943 * 29.99866 * 3 2 1 6 6 H 1.48503 * 109.46932 * 149.99857 * 3 2 1 7 7 C 1.37874 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99726 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46753 * 180.02562 * 9 7 2 11 11 C 1.38276 * 119.93298 * 90.00507 * 10 9 7 12 12 C 1.38115 * 120.07443 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.92555 * 359.97438 * 12 11 10 14 14 N 1.39948 * 120.06840 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00230 * 144.35928 * 14 13 12 16 16 O 1.21588 * 119.99480 * 4.51363 * 15 14 13 17 17 N 1.34771 * 120.00177 * 184.50992 * 15 14 13 18 18 C 1.46929 * 120.62887 * 354.74913 * 17 15 14 19 19 C 1.53193 * 108.77200 * 233.58554 * 18 17 15 20 20 C 1.53043 * 109.31082 * 305.36239 * 19 18 17 21 21 H 1.09010 * 109.45963 * 181.37208 * 20 19 18 22 22 O 1.42902 * 109.46146 * 301.34595 * 20 19 18 23 23 C 1.53039 * 109.53847 * 61.36625 * 20 19 18 24 24 H 1.09003 * 109.49644 * 58.58500 * 23 20 19 25 25 C 1.53000 * 109.49870 * 178.67990 * 23 20 19 26 26 O 1.42902 * 109.47238 * 185.00090 * 25 23 20 27 27 C 1.46920 * 120.63360 * 174.71929 * 17 15 14 28 28 C 1.38859 * 119.86296 * 0.27451 * 13 12 11 29 29 C 1.38124 * 119.92826 * 359.43238 * 28 13 12 30 30 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47471 * 60.00392 * 9 7 2 32 32 H 1.08997 * 109.47515 * 299.99453 * 9 7 2 33 33 H 1.08001 * 119.96471 * 0.02562 * 11 10 9 34 34 H 1.07994 * 120.03777 * 180.02562 * 12 11 10 35 35 H 0.97000 * 119.99209 * 324.35833 * 14 13 12 36 36 H 1.08990 * 109.59095 * 113.80075 * 18 17 15 37 37 H 1.08998 * 109.70312 * 353.43633 * 18 17 15 38 38 H 1.09001 * 109.49683 * 185.41379 * 19 18 17 39 39 H 1.08999 * 109.50130 * 65.31529 * 19 18 17 40 40 H 0.96705 * 113.99640 * 299.99750 * 22 20 19 41 41 H 1.09001 * 109.47045 * 305.00419 * 25 23 20 42 42 H 1.09004 * 109.46913 * 65.00217 * 25 23 20 43 43 H 0.96697 * 113.99921 * 180.02562 * 26 25 23 44 44 H 1.09001 * 109.59114 * 246.20448 * 27 17 15 45 45 H 1.09008 * 109.58380 * 6.48964 * 27 17 15 46 46 H 1.07998 * 120.03717 * 179.69996 * 28 13 12 47 47 H 1.08001 * 119.96353 * 180.27548 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6778 -4.1685 1.2007 12 6 3.5757 -5.2179 1.2053 13 6 4.0289 -5.7472 0.0040 14 7 4.9383 -6.8109 0.0052 15 6 4.8601 -7.7654 -0.9431 16 8 4.0532 -7.6601 -1.8465 17 7 5.6764 -8.8365 -0.8900 18 6 6.7328 -8.9229 0.1275 19 6 8.0702 -9.1866 -0.5715 20 6 7.9436 -10.4310 -1.4534 21 1 8.9009 -10.6351 -1.9331 22 8 7.5670 -11.5494 -0.6474 23 6 6.8772 -10.1926 -2.5249 24 1 7.1516 -9.3246 -3.1244 25 6 6.7746 -11.4247 -3.4262 26 8 5.8641 -11.1586 -4.4950 27 6 5.5264 -9.9403 -1.8480 28 6 3.5817 -5.2154 -1.1982 29 6 2.6790 -4.1700 -1.1960 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.3246 -3.7567 2.1346 34 1 3.9244 -5.6269 2.1420 35 1 5.6249 -6.8610 0.6885 36 1 6.5125 -9.7397 0.8147 37 1 6.7882 -7.9851 0.6803 38 1 8.8461 -9.3484 0.1767 39 1 8.3333 -8.3281 -1.1894 40 1 8.1990 -11.7595 0.0537 41 1 7.7574 -11.6582 -3.8358 42 1 6.4131 -12.2720 -2.8435 43 1 5.7494 -11.8981 -5.1073 44 1 5.2076 -10.8401 -1.3219 45 1 4.7830 -9.6735 -2.5993 46 1 3.9360 -5.6217 -2.1341 47 1 2.3275 -3.7589 -2.1308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932563465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:05 Heat of formation + Delta-G solvation = -98.334984 kcal Electronic energy + Delta-G solvation = -28510.405417 eV Core-core repulsion = 24465.113469 eV Total energy + Delta-G solvation = -4045.291948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.95917 -39.44277 -38.08407 -37.00166 -35.68190 -34.88668 -33.10383 -32.42619 -31.58175 -30.29972 -30.15833 -26.94228 -26.07202 -25.33500 -23.09872 -22.77605 -22.24440 -21.04089 -20.24683 -19.62031 -18.53682 -17.73094 -17.48018 -17.05700 -16.26133 -15.85653 -15.68085 -15.49032 -15.10844 -14.87337 -14.56165 -14.37010 -14.18221 -14.12025 -13.64981 -13.47200 -13.10803 -12.85563 -12.74359 -12.54483 -12.44814 -12.13271 -11.91710 -11.81844 -11.37255 -11.30084 -11.22117 -10.93186 -10.78335 -10.57403 -10.50081 -10.33947 -10.30902 -10.02874 -9.78528 -9.38249 -9.21279 -8.81451 -8.37543 -8.19321 -7.28763 -5.98781 -4.02598 2.02603 2.15967 2.50942 3.19646 3.33629 3.39566 3.43609 3.61778 3.66246 3.80874 4.18772 4.37087 4.43421 4.46270 4.54385 4.64092 4.82618 4.93843 4.97146 5.02771 5.11119 5.22218 5.24887 5.35056 5.45151 5.49709 5.52444 5.66435 5.73833 5.90324 6.03763 6.12005 6.16138 6.28816 6.33821 6.64683 6.76173 7.03624 7.07849 7.09752 7.25091 7.28411 7.30326 7.58378 7.81006 7.86844 7.94563 7.97228 8.38357 8.56858 9.02798 9.60740 11.10783 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023915 B = 0.002109 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.552641 B =13274.786743 C =13643.184168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.044 4.044 11 C -0.109 4.109 12 C -0.145 4.145 13 C 0.120 3.880 14 N -0.682 5.682 15 C 0.705 3.295 16 O -0.567 6.567 17 N -0.629 5.629 18 C 0.115 3.885 19 C -0.168 4.168 20 C 0.113 3.887 21 H 0.060 0.940 22 O -0.561 6.561 23 C -0.095 4.095 24 H 0.093 0.907 25 C 0.087 3.913 26 O -0.571 6.571 27 C 0.145 3.855 28 C -0.115 4.115 29 C -0.109 4.109 30 H 0.261 0.739 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.398 0.602 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.378 0.622 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.380 0.620 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.075 -26.271 -0.511 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.044 4.044 11 C -0.128 4.128 12 C -0.165 4.165 13 C 0.027 3.973 14 N -0.332 5.332 15 C 0.407 3.593 16 O -0.443 6.443 17 N -0.367 5.367 18 C -0.008 4.008 19 C -0.207 4.207 20 C 0.054 3.946 21 H 0.078 0.922 22 O -0.367 6.367 23 C -0.115 4.115 24 H 0.112 0.888 25 C 0.009 3.991 26 O -0.376 6.376 27 C 0.022 3.978 28 C -0.135 4.135 29 C -0.127 4.127 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.235 0.765 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.225 0.775 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.227 0.773 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.146 0.854 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.774 -25.534 -1.269 31.719 hybrid contribution 1.593 0.395 0.564 1.735 sum 20.367 -25.139 -0.706 32.362 Atomic orbital electron populations 1.69963 1.06012 1.26729 1.50669 1.25021 0.94881 0.99222 0.95318 0.86543 0.79793 0.83246 0.78150 1.20621 1.21217 1.19859 1.21074 0.93037 0.89905 1.50718 0.92483 1.18346 0.92587 0.89596 0.98365 1.20695 0.96527 0.95340 0.91881 1.20848 0.97501 0.95917 0.98493 1.20708 1.00451 0.99956 0.95423 1.17317 0.95538 0.90118 0.94338 1.42649 1.34661 1.24115 1.31734 1.15834 0.81418 0.79432 0.82627 1.90947 1.39947 1.77994 1.35413 1.47254 1.34494 1.20118 1.34849 1.21502 0.86644 1.02102 0.90586 1.22627 0.97897 0.99604 1.00546 1.21679 0.96666 0.85474 0.90796 0.92184 1.86543 1.51963 1.49493 1.48654 1.21558 0.96187 0.98921 0.94823 0.88848 1.22043 0.92357 0.96718 0.88018 1.86530 1.66187 1.43886 1.41014 1.21349 0.96633 0.88111 0.91723 1.21137 0.99195 0.96110 0.97074 1.21014 0.97516 0.95729 0.98473 0.92895 0.95307 0.95353 0.86081 0.87010 0.76476 0.90608 0.90529 0.89987 0.90150 0.77454 0.93659 0.92530 0.77263 0.91127 0.88023 0.85384 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.05 1.27 5.10 -29.03 -0.15 1.12 16 10 C -0.04 -1.00 5.07 -104.59 -0.53 -1.53 16 11 C -0.11 -2.18 9.69 -39.61 -0.38 -2.56 16 12 C -0.14 -2.48 9.97 -39.39 -0.39 -2.87 16 13 C 0.12 2.10 6.28 -83.69 -0.53 1.58 16 14 N -0.68 -9.54 5.25 -14.23 -0.07 -9.62 16 15 C 0.70 10.69 8.14 -86.92 -0.71 9.99 16 16 O -0.57 -11.01 13.25 5.29 0.07 -10.94 16 17 N -0.63 -7.01 2.97 -178.51 -0.53 -7.54 16 18 C 0.12 0.81 6.14 -3.71 -0.02 0.78 16 19 C -0.17 -0.84 5.80 -26.61 -0.15 -1.00 16 20 C 0.11 0.61 3.19 -26.69 -0.09 0.53 16 21 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 22 O -0.56 -2.87 11.52 -35.23 -0.41 -3.28 16 23 C -0.10 -0.79 2.41 -90.50 -0.22 -1.00 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 C 0.09 0.62 6.23 37.16 0.23 0.85 16 26 O -0.57 -4.93 13.31 -35.23 -0.47 -5.40 16 27 C 0.14 1.58 5.32 -3.72 -0.02 1.56 16 28 C -0.12 -2.28 8.69 -39.39 -0.34 -2.62 16 29 C -0.11 -2.33 9.69 -39.61 -0.38 -2.71 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.40 4.11 6.31 -40.82 -0.26 3.85 16 36 H 0.08 0.48 7.81 -51.93 -0.41 0.07 16 37 H 0.08 0.46 5.66 -51.93 -0.29 0.16 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.38 0.44 9.08 45.56 0.41 0.85 16 41 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.06 0.39 7.87 -51.93 -0.41 -0.01 16 43 H 0.38 1.51 9.12 45.56 0.42 1.93 16 44 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 45 H 0.10 1.43 6.84 -51.92 -0.36 1.08 16 46 H 0.13 2.57 6.29 -52.49 -0.33 2.24 16 47 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -36.49 380.62 -9.44 -45.93 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.39 Total: 5.60 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -4.09 Total: -11.17 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.13 Total: -43.30 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.80 Total: -19.62 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.49 -9.44 -45.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932563465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.402 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds